Wall clock time and date at job start Tue Mar 31 2020 19:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42098 * 108.58065 * 2 1 4 4 O 1.42101 * 108.57338 * 228.97182 * 2 1 3 5 5 C 1.81401 * 101.92189 * 114.48833 * 2 1 3 6 6 H 1.08997 * 115.54712 * 325.66826 * 5 2 1 7 7 C 1.53079 * 117.53267 * 111.38364 * 5 2 1 8 8 C 1.52995 * 59.98318 * 107.46975 * 7 5 2 9 9 C 1.52997 * 117.49867 * 252.49956 * 8 7 5 10 10 N 1.46497 * 109.47455 * 152.72246 * 9 8 7 11 11 C 1.34780 * 120.00357 * 175.44374 * 10 9 8 12 12 O 1.21287 * 119.99848 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00231 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.46930 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99983 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99543 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00337 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99603 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00176 * 180.27523 * 17 15 14 20 20 H 1.48494 * 109.47123 * 179.72699 * 19 17 15 21 21 H 1.48502 * 109.46940 * 299.72708 * 19 17 15 22 22 H 1.48500 * 109.47052 * 59.72228 * 19 17 15 23 23 C 1.50693 * 117.50163 * 107.50184 * 8 7 5 24 24 O 1.20827 * 120.00125 * 260.20532 * 23 8 7 25 25 O 1.34231 * 119.99964 * 80.20452 * 23 8 7 26 26 H 1.09000 * 109.46418 * 305.51389 * 1 2 3 27 27 H 1.08993 * 109.47198 * 65.51115 * 1 2 3 28 28 H 1.08999 * 109.47186 * 185.51736 * 1 2 3 29 29 H 1.08999 * 117.51310 * 359.97438 * 7 5 2 30 30 H 1.09005 * 117.48939 * 214.95714 * 7 5 2 31 31 H 1.09007 * 109.47375 * 32.72625 * 9 8 7 32 32 H 1.08996 * 109.47500 * 272.72650 * 9 8 7 33 33 H 0.97001 * 119.99949 * 355.44478 * 10 9 8 34 34 H 1.08998 * 109.47052 * 60.00242 * 13 11 10 35 35 H 1.08996 * 109.47253 * 299.99564 * 13 11 10 36 36 H 0.97003 * 119.99683 * 180.02562 * 18 17 15 37 37 H 0.96701 * 117.00175 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.4914 -0.4911 2.4163 7 6 2.8192 -2.1306 1.6283 8 6 3.6626 -0.9061 1.9891 9 6 4.7075 -0.4434 0.9718 10 7 4.9369 0.9952 1.1272 11 6 5.8882 1.6088 0.3958 12 8 6.5547 0.9700 -0.3907 13 6 6.1245 3.0885 0.5561 14 16 7.4559 3.6105 -0.5533 15 6 7.5178 5.3291 -0.1696 16 1 6.8442 5.7427 0.5663 17 6 8.4330 6.1513 -0.8124 18 7 9.2550 5.6469 -1.7083 19 14 8.5038 7.9718 -0.4001 20 1 9.5623 8.6227 -1.2131 21 1 7.1919 8.5990 -0.7017 22 1 8.8132 8.1409 1.0424 23 6 4.0389 -0.7224 3.4367 24 8 3.4170 0.0477 4.1296 25 8 5.0651 -1.4142 3.9564 26 1 -0.3632 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9351 28 1 -0.3633 -1.0229 0.0988 29 1 3.0086 -2.6066 0.6662 30 1 2.5362 -2.8031 2.4381 31 1 4.3478 -0.6470 -0.0368 32 1 5.6410 -0.9804 1.1399 33 1 4.4041 1.5060 1.7566 34 1 6.4066 3.3018 1.5871 35 1 5.2119 3.6310 0.3094 36 1 9.8948 6.2214 -2.1572 37 1 5.2687 -1.2631 4.8895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599762247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:16 Heat of formation + Delta-G solvation = -157.121415 kcal Electronic energy + Delta-G solvation = -25017.767343 eV Core-core repulsion = 21015.593622 eV Total energy + Delta-G solvation = -4002.173721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19953 -39.19670 -38.03212 -37.26522 -36.52383 -36.30467 -34.04026 -32.35493 -30.18443 -29.70111 -27.21535 -25.45552 -24.96447 -23.95489 -20.95312 -20.32615 -19.08033 -18.51406 -18.07403 -17.62710 -17.12994 -16.54651 -16.25007 -16.15018 -15.86110 -15.51449 -15.11979 -14.73508 -14.53491 -13.87795 -13.82268 -13.65029 -13.55771 -13.39763 -13.08283 -12.89279 -12.52872 -12.36424 -12.28956 -12.12674 -11.86454 -11.82663 -11.53552 -11.38384 -11.01835 -10.97570 -10.97050 -10.95990 -10.70025 -9.75486 -9.37802 -9.00800 -8.94527 -8.15654 -6.41181 -6.14237 -3.83899 -0.47052 1.55379 2.00908 2.29576 2.54318 2.98337 3.13616 3.19914 3.29233 3.30297 3.34152 3.55647 3.63574 3.85553 3.96608 3.99332 4.27744 4.37048 4.49625 4.56434 4.80971 4.90038 5.08641 5.19529 5.20131 5.20742 5.22677 5.48577 5.77518 5.96920 6.01832 6.28341 6.49218 7.36978 7.66475 7.68386 8.42943 8.62669 9.30916 10.93233 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003116 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.368774 B = 8983.276512 C = 9724.884022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.446 3.554 3 O -0.907 6.907 4 O -0.925 6.925 5 C -0.648 4.648 6 H 0.172 0.828 7 C -0.082 4.082 8 C -0.092 4.092 9 C 0.133 3.867 10 N -0.739 5.739 11 C 0.540 3.460 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.869 5.869 19 Si 0.919 3.081 20 H -0.283 1.283 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.522 3.478 24 O -0.499 6.499 25 O -0.500 6.500 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.915 -18.428 10.982 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.623 3.377 3 O -0.904 6.904 4 O -0.922 6.922 5 C -0.752 4.752 6 H 0.189 0.811 7 C -0.120 4.120 8 C -0.094 4.094 9 C 0.008 3.992 10 N -0.395 5.395 11 C 0.327 3.673 12 O -0.389 6.389 13 C -0.303 4.303 14 S 0.168 5.832 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.209 1.209 21 H -0.199 1.199 22 H -0.200 1.200 23 C 0.363 3.637 24 O -0.386 6.386 25 O -0.312 6.312 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.239 0.761 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -18.311 -19.022 8.688 27.796 hybrid contribution -1.674 2.086 2.949 3.981 sum -19.985 -16.936 11.637 28.664 Atomic orbital electron populations 1.30246 1.26209 1.11660 1.12162 1.07347 0.78476 0.76083 0.75778 1.93686 1.78585 1.32943 1.85170 1.93634 1.79202 1.67547 1.51787 1.32822 1.02669 1.13299 1.26443 0.81050 1.23152 0.94904 0.87488 1.06474 1.20723 0.90253 1.06727 0.91733 1.21129 0.98164 0.83846 0.96040 1.45974 1.40114 1.07647 1.45768 1.20290 0.78240 0.89529 0.79255 1.90708 1.46563 1.66504 1.35076 1.23528 1.06858 0.93562 1.06375 1.85337 1.39501 1.07899 1.50501 1.22848 1.23879 0.93485 1.28068 0.90942 1.24979 0.94649 0.99361 0.94562 1.70014 1.19773 1.36094 1.24513 0.86226 0.77942 0.82867 0.78468 1.20862 1.19939 1.19988 1.21639 0.77092 0.76820 0.88159 1.90768 1.52011 1.34645 1.61224 1.84494 1.48822 1.63968 1.33951 0.85120 0.84818 0.85181 0.84150 0.85743 0.89356 0.87575 0.76105 0.89228 0.88573 0.92199 0.72244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.71 10.62 101.05 1.07 -1.63 16 2 S 2.45 20.75 4.50 -107.50 -0.48 20.27 16 3 O -0.91 -11.84 17.30 -57.83 -1.00 -12.84 16 4 O -0.92 -10.47 15.99 -57.83 -0.92 -11.39 16 5 C -0.65 -4.18 5.78 -26.69 -0.15 -4.33 16 6 H 0.17 0.73 7.99 -51.93 -0.42 0.32 16 7 C -0.08 -0.42 9.54 -26.69 -0.25 -0.68 16 8 C -0.09 -0.81 2.07 -155.67 -0.32 -1.14 16 9 C 0.13 1.65 4.88 -4.05 -0.02 1.63 16 10 N -0.74 -11.33 4.69 -60.30 -0.28 -11.61 16 11 C 0.54 10.98 7.85 -10.99 -0.09 10.89 16 12 O -0.51 -12.20 15.86 5.55 0.09 -12.11 16 13 C -0.15 -3.35 6.16 36.00 0.22 -3.13 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.53 -15.76 9.50 30.94 0.29 -15.47 16 16 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 17 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 18 N -0.87 -26.77 13.22 55.49 0.73 -26.04 16 19 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.52 4.91 7.30 36.00 0.26 5.17 16 24 O -0.50 -5.82 17.45 -18.75 -0.33 -6.15 16 25 O -0.50 -3.67 13.42 -39.26 -0.53 -4.19 16 26 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 29 H 0.14 0.62 7.55 -51.93 -0.39 0.23 16 30 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.15 6.02 -51.93 -0.31 0.84 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.40 5.55 8.35 -40.82 -0.34 5.21 16 34 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 35 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.42 1.31 9.10 45.56 0.41 1.72 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -42.37 355.20 -7.24 -49.61 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.55 Total: 2.64 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.92 Total: -6.62 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.45 Total: -37.65 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.69 Total: -46.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 19.09 SS G_CDS: -2.70 Total: 16.39 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -42.37 -7.24 -49.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599762247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.515 kcal (2) G-P(sol) polarization free energy of solvation -42.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds