Wall clock time and date at job start Tue Mar 31 2020 19:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42098 * 108.58065 * 2 1 4 4 O 1.42101 * 108.57338 * 228.97182 * 2 1 3 5 5 C 1.81401 * 101.92189 * 114.48833 * 2 1 3 6 6 H 1.08997 * 115.54712 * 325.66826 * 5 2 1 7 7 C 1.53079 * 117.53267 * 111.38364 * 5 2 1 8 8 C 1.52995 * 59.98318 * 107.46975 * 7 5 2 9 9 C 1.52997 * 117.49867 * 252.49956 * 8 7 5 10 10 N 1.46497 * 109.47455 * 152.72246 * 9 8 7 11 11 C 1.34780 * 120.00357 * 175.44374 * 10 9 8 12 12 O 1.21287 * 119.99848 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00231 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.46930 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99983 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99543 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00337 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99603 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00176 * 180.27523 * 17 15 14 20 20 H 1.48494 * 109.47123 * 179.72699 * 19 17 15 21 21 H 1.48502 * 109.46940 * 299.72708 * 19 17 15 22 22 H 1.48500 * 109.47052 * 59.72228 * 19 17 15 23 23 C 1.50693 * 117.50163 * 107.50184 * 8 7 5 24 24 O 1.20827 * 120.00125 * 260.20532 * 23 8 7 25 25 O 1.34231 * 119.99964 * 80.20452 * 23 8 7 26 26 H 1.09000 * 109.46418 * 305.51389 * 1 2 3 27 27 H 1.08993 * 109.47198 * 65.51115 * 1 2 3 28 28 H 1.08999 * 109.47186 * 185.51736 * 1 2 3 29 29 H 1.08999 * 117.51310 * 359.97438 * 7 5 2 30 30 H 1.09005 * 117.48939 * 214.95714 * 7 5 2 31 31 H 1.09007 * 109.47375 * 32.72625 * 9 8 7 32 32 H 1.08996 * 109.47500 * 272.72650 * 9 8 7 33 33 H 0.97001 * 119.99949 * 355.44478 * 10 9 8 34 34 H 1.08998 * 109.47052 * 60.00242 * 13 11 10 35 35 H 1.08996 * 109.47253 * 299.99564 * 13 11 10 36 36 H 0.97003 * 119.99683 * 180.02562 * 18 17 15 37 37 H 0.96701 * 117.00175 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.4914 -0.4911 2.4163 7 6 2.8192 -2.1306 1.6283 8 6 3.6626 -0.9061 1.9891 9 6 4.7075 -0.4434 0.9718 10 7 4.9369 0.9952 1.1272 11 6 5.8882 1.6088 0.3958 12 8 6.5547 0.9700 -0.3907 13 6 6.1245 3.0885 0.5561 14 16 7.4559 3.6105 -0.5533 15 6 7.5178 5.3291 -0.1696 16 1 6.8442 5.7427 0.5663 17 6 8.4330 6.1513 -0.8124 18 7 9.2550 5.6469 -1.7083 19 14 8.5038 7.9718 -0.4001 20 1 9.5623 8.6227 -1.2131 21 1 7.1919 8.5990 -0.7017 22 1 8.8132 8.1409 1.0424 23 6 4.0389 -0.7224 3.4367 24 8 3.4170 0.0477 4.1296 25 8 5.0651 -1.4142 3.9564 26 1 -0.3632 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9351 28 1 -0.3633 -1.0229 0.0988 29 1 3.0086 -2.6066 0.6662 30 1 2.5362 -2.8031 2.4381 31 1 4.3478 -0.6470 -0.0368 32 1 5.6410 -0.9804 1.1399 33 1 4.4041 1.5060 1.7566 34 1 6.4066 3.3018 1.5871 35 1 5.2119 3.6310 0.3094 36 1 9.8948 6.2214 -2.1572 37 1 5.2687 -1.2631 4.8895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599762247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:15 Heat of formation + Delta-G solvation = -193.571408 kcal Electronic energy + Delta-G solvation = -25019.347933 eV Core-core repulsion = 21015.593622 eV Total energy + Delta-G solvation = -4003.754311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.058 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93035 -40.60534 -38.83264 -38.02149 -37.21575 -37.04190 -35.37894 -34.59053 -31.46103 -30.40824 -28.32510 -27.60457 -25.88514 -24.45510 -21.92656 -21.57072 -19.99451 -19.68192 -19.14587 -18.64182 -18.03203 -17.70343 -17.29069 -16.90922 -16.87692 -16.65670 -16.57906 -16.52243 -15.80409 -15.27809 -14.81097 -14.55658 -14.46590 -14.27900 -14.00333 -13.95007 -13.58377 -13.46727 -13.18142 -13.12032 -13.05673 -12.86925 -12.75959 -12.65226 -12.44964 -12.24861 -12.01615 -11.76163 -11.72222 -11.56193 -11.13427 -11.03588 -10.33025 -10.31804 -8.68148 -8.34828 -6.13637 -1.05545 0.86454 1.20771 1.39759 1.43952 1.47617 1.51034 1.55955 1.73911 1.94332 2.18369 2.26995 2.61409 2.98744 2.98976 3.06343 3.22868 3.31545 3.44165 3.88006 3.93108 4.07580 4.17132 4.22976 4.28493 4.29171 4.47266 4.53388 4.58805 4.74525 4.94212 5.15961 5.40780 5.40958 6.19287 6.27427 6.81685 7.05647 7.07502 8.74461 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003116 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.368774 B = 8983.276512 C = 9724.884022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.424 3.576 3 O -0.968 6.968 4 O -0.967 6.967 5 C -0.629 4.629 6 H 0.201 0.799 7 C -0.054 4.054 8 C -0.120 4.120 9 C 0.127 3.873 10 N -0.717 5.717 11 C 0.540 3.460 12 O -0.557 6.557 13 C -0.132 4.132 14 S -0.142 6.142 15 C -0.551 4.551 16 H 0.081 0.919 17 C 0.015 3.985 18 N -0.910 5.910 19 Si 1.000 3.000 20 H -0.276 1.276 21 H -0.263 1.263 22 H -0.261 1.261 23 C 0.529 3.471 24 O -0.525 6.525 25 O -0.499 6.499 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.413 0.587 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.272 0.728 37 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.604 -18.905 13.268 32.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.609 3.391 3 O -0.965 6.965 4 O -0.964 6.964 5 C -0.736 4.736 6 H 0.218 0.782 7 C -0.092 4.092 8 C -0.123 4.123 9 C 0.003 3.997 10 N -0.372 5.372 11 C 0.326 3.674 12 O -0.434 6.434 13 C -0.283 4.283 14 S 0.085 5.915 15 C -0.699 4.699 16 H 0.099 0.901 17 C -0.190 4.190 18 N -0.547 5.547 19 Si 0.822 3.178 20 H -0.201 1.201 21 H -0.188 1.188 22 H -0.186 1.186 23 C 0.371 3.629 24 O -0.414 6.414 25 O -0.313 6.313 26 H 0.173 0.827 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -20.993 -19.521 10.996 30.703 hybrid contribution -0.960 2.073 2.309 3.248 sum -21.953 -17.448 13.305 31.038 Atomic orbital electron populations 1.30033 1.19946 1.14557 1.13586 1.07425 0.80928 0.74611 0.76118 1.93618 1.81115 1.35580 1.86235 1.93583 1.81287 1.67723 1.53821 1.32698 1.01431 1.14090 1.25378 0.78157 1.23484 0.91131 0.86742 1.07826 1.20592 0.90508 1.10589 0.90608 1.21248 0.99664 0.81536 0.97225 1.45739 1.38093 1.09229 1.44114 1.20003 0.79020 0.88843 0.79490 1.90688 1.48563 1.67054 1.37126 1.23375 1.04378 0.95064 1.05499 1.85465 1.43228 1.09167 1.53640 1.23184 1.24536 0.93548 1.28615 0.90103 1.26138 0.93791 1.05051 0.94009 1.70176 1.20550 1.38268 1.25663 0.84983 0.78457 0.75616 0.78784 1.20068 1.18775 1.18598 1.21609 0.76970 0.76275 0.88052 1.90760 1.53012 1.35698 1.61947 1.84468 1.47913 1.63374 1.35549 0.82680 0.84383 0.81813 0.83598 0.82230 0.90164 0.87729 0.75027 0.87182 0.87721 0.91883 0.70200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.00 10.62 113.37 1.20 -1.80 16 2 S 2.42 38.88 4.50 -56.49 -0.25 38.62 16 3 O -0.97 -25.84 17.30 -127.37 -2.20 -28.05 16 4 O -0.97 -22.08 15.99 -127.37 -2.04 -24.11 16 5 C -0.63 -6.40 5.78 30.62 0.18 -6.22 16 6 H 0.20 0.86 7.99 -2.39 -0.02 0.84 16 7 C -0.05 -0.38 9.54 30.62 0.29 -0.09 16 8 C -0.12 -1.92 2.07 -52.93 -0.11 -2.03 16 9 C 0.13 3.17 4.88 86.38 0.42 3.59 16 10 N -0.72 -22.29 4.69 -463.06 -2.17 -24.47 16 11 C 0.54 22.69 7.85 87.66 0.69 23.38 16 12 O -0.56 -27.70 15.86 -3.05 -0.05 -27.75 16 13 C -0.13 -5.94 6.16 71.24 0.44 -5.50 16 14 S -0.14 -8.37 20.57 -56.49 -1.16 -9.53 16 15 C -0.55 -33.05 9.50 67.95 0.65 -32.40 16 16 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 17 C 0.01 0.88 5.49 84.86 0.47 1.35 16 18 N -0.91 -57.43 13.22 21.65 0.29 -57.15 16 19 Si 1.00 45.07 29.55 68.60 2.03 47.09 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 C 0.53 8.84 7.30 71.23 0.52 9.36 16 24 O -0.52 -11.12 17.45 21.96 0.38 -10.74 16 25 O -0.50 -6.28 13.42 -51.43 -0.69 -6.97 16 26 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.15 0.94 7.55 -2.39 -0.02 0.92 16 30 H 0.16 0.08 8.14 -2.38 -0.02 0.06 16 31 H 0.08 2.18 6.02 -2.38 -0.01 2.16 16 32 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.41 11.30 8.35 -92.71 -0.77 10.53 16 34 H 0.11 4.44 8.14 -2.40 -0.02 4.42 16 35 H 0.10 4.50 8.14 -2.40 -0.02 4.48 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.44 1.82 9.10 -74.06 -0.67 1.14 16 Total: -1.00 -97.01 355.20 -1.44 -98.45 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.31 Total: 14.96 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.74 Total: -10.35 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.89 Total: -81.61 kcal Atomic # 8 Polarization: -93.03 SS G_CDS: -4.60 Total: -97.63 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 30.51 SS G_CDS: -1.42 Total: 29.09 kcal Total: -97.01 -1.44 -98.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599762247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.125 kcal (2) G-P(sol) polarization free energy of solvation -97.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds