Wall clock time and date at job start Tue Mar 31 2020 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76205 * 99.99780 * 2 1 4 4 N 1.32526 * 119.61470 * 0.25136 * 3 2 1 5 5 C 1.32095 * 121.87103 * 180.31104 * 4 3 2 6 6 O 1.35300 * 119.58069 * 179.70975 * 5 4 3 7 7 C 1.40723 * 120.84692 * 359.43503 * 5 4 3 8 8 C 1.47164 * 120.43152 * 180.25297 * 7 5 4 9 9 O 1.21660 * 120.00076 * 55.01843 * 8 7 5 10 10 N 1.34775 * 120.00060 * 235.01481 * 8 7 5 11 11 C 1.36930 * 119.99993 * 185.77534 * 10 8 7 12 12 H 1.07997 * 120.00164 * 6.29045 * 11 10 8 13 13 C 1.38993 * 119.99912 * 186.28374 * 11 10 8 14 14 N 1.31405 * 120.00113 * 25.02252 * 13 11 10 15 15 Si 1.86804 * 120.00214 * 205.01926 * 13 11 10 16 16 H 1.48499 * 109.46803 * 59.99772 * 15 13 11 17 17 H 1.48498 * 109.47571 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46932 * 300.00091 * 15 13 11 19 19 C 1.46505 * 119.99821 * 5.78146 * 10 8 7 20 20 C 1.50695 * 109.47300 * 92.73855 * 19 10 8 21 21 O 1.20832 * 120.00157 * 359.97438 * 20 19 10 22 22 O 1.34230 * 120.00211 * 179.97438 * 20 19 10 23 23 C 1.39843 * 119.13968 * 0.27600 * 7 5 4 24 24 C 1.39568 * 118.30115 * 359.97438 * 23 7 5 25 25 C 1.43197 * 120.46578 * 180.02562 * 24 23 7 26 26 N 3.64656 * 171.15529 * 0.16905 * 2 1 3 27 27 H 1.09000 * 109.47109 * 299.99615 * 1 2 3 28 28 H 1.08991 * 109.47184 * 59.99768 * 1 2 3 29 29 H 1.08999 * 109.46427 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00020 * 269.73117 * 6 5 4 31 31 H 0.97005 * 119.99817 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.46789 * 212.73376 * 19 10 8 33 33 H 1.08999 * 109.47082 * 332.73754 * 19 10 8 34 34 H 0.96703 * 116.99876 * 179.97438 * 22 20 19 35 35 H 1.08006 * 120.85551 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0950 2.5803 0.0051 5 6 1.2729 3.8892 -0.0008 6 8 0.1969 4.7095 -0.0012 7 6 2.5673 4.4414 -0.0009 8 6 2.7549 5.9011 -0.0018 9 8 2.2331 6.5820 0.8608 10 7 3.5048 6.4835 -0.9583 11 6 3.7773 7.8238 -0.8932 12 1 3.4790 8.3940 -0.0259 13 6 4.4381 8.4504 -1.9432 14 7 4.3735 7.9457 -3.1548 15 14 5.4179 10.0102 -1.6323 16 1 6.4934 9.7310 -0.6472 17 1 6.0216 10.4778 -2.9059 18 1 4.5169 11.0622 -1.0966 19 6 4.0282 5.6826 -2.0677 20 6 3.0653 5.7382 -3.2256 21 8 2.0460 6.3806 -3.1334 22 8 3.3398 5.0741 -4.3594 23 6 3.6729 3.5853 -0.0005 24 6 3.4437 2.2085 0.0005 25 6 4.5420 1.2896 0.0015 26 7 5.4132 0.5607 0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.1158 4.9476 -0.8847 31 1 4.8350 8.3829 -3.8875 32 1 4.9941 6.0805 -2.3790 33 1 4.1483 4.6486 -1.7444 34 1 2.6919 5.1395 -5.0743 35 1 4.6786 3.9792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599804570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:44 Heat of formation + Delta-G solvation = -68.893994 kcal Electronic energy + Delta-G solvation = -27133.157501 eV Core-core repulsion = 23031.658408 eV Total energy + Delta-G solvation = -4101.499093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79987 -39.38115 -38.12404 -37.43441 -36.26498 -35.39660 -34.65001 -33.16302 -31.87622 -30.77478 -29.10635 -27.93991 -25.84860 -24.28271 -24.10392 -21.36660 -20.69142 -19.20118 -18.51786 -17.72206 -17.34222 -17.07566 -16.82115 -16.10205 -15.76815 -15.47914 -14.90288 -14.63085 -14.58708 -14.26453 -14.04332 -13.88000 -13.64507 -13.38672 -13.24765 -12.97233 -12.70759 -12.69720 -12.37073 -12.11942 -11.86311 -11.77477 -11.73835 -11.13722 -10.92795 -10.64960 -10.56904 -10.49647 -10.08083 -9.89517 -9.74043 -9.51442 -9.23011 -8.79882 -8.25221 -7.79854 -6.74682 -4.06021 0.27549 0.77607 1.17996 1.86576 2.56876 2.64904 3.01130 3.11990 3.15678 3.24732 3.41533 3.44193 3.58715 3.77794 3.94991 4.11758 4.39023 4.53003 4.77624 4.83780 4.96828 5.05681 5.06698 5.26070 5.54616 5.62275 5.65736 5.72748 6.03343 6.26244 6.38605 7.27249 7.29038 7.37823 7.39021 7.62812 7.67533 8.10041 8.81503 8.87050 9.02833 9.54782 10.33092 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.004058 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.686138 B = 6897.684729 C = 7106.579412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.053 6.053 3 C 0.182 3.818 4 N -0.506 5.506 5 C 0.395 3.605 6 O -0.459 6.459 7 C -0.164 4.164 8 C 0.487 3.513 9 O -0.551 6.551 10 N -0.413 5.413 11 C -0.297 4.297 12 H 0.117 0.883 13 C 0.032 3.968 14 N -0.871 5.871 15 Si 0.935 3.065 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.134 3.866 20 C 0.495 3.505 21 O -0.507 6.507 22 O -0.532 6.532 23 C 0.013 3.987 24 C -0.079 4.079 25 C 0.263 3.737 26 N -0.400 5.400 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.409 0.591 31 H 0.277 0.723 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -11.991 -0.897 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.187 5.813 3 C -0.071 4.071 4 N -0.229 5.229 5 C 0.211 3.789 6 O -0.266 6.266 7 C -0.175 4.175 8 C 0.275 3.725 9 O -0.434 6.434 10 N -0.131 5.131 11 C -0.424 4.424 12 H 0.134 0.866 13 C -0.172 4.172 14 N -0.510 5.510 15 Si 0.761 3.239 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.008 3.992 20 C 0.336 3.664 21 O -0.392 6.392 22 O -0.343 6.343 23 C -0.016 4.016 24 C -0.092 4.092 25 C -0.054 4.054 26 N -0.075 5.075 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.270 0.730 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.834 -13.872 0.294 13.996 hybrid contribution -0.573 2.654 -1.255 2.991 sum -2.407 -11.218 -0.961 11.514 Atomic orbital electron populations 1.23500 0.93238 1.06160 1.07566 1.85960 1.08657 0.96501 1.90194 1.22918 0.89110 0.98704 0.96361 1.67514 1.32914 1.03831 1.18642 1.19159 0.85698 0.85083 0.88929 1.84679 1.44859 1.63162 1.33940 1.21299 0.92963 0.97363 1.05854 1.17130 0.83456 0.85006 0.86876 1.90715 1.49498 1.63228 1.39929 1.43578 1.42720 1.08775 1.18061 1.19846 1.33764 0.83891 1.04905 0.86576 1.25297 0.98028 1.00173 0.93693 1.69709 1.39955 1.42099 0.99269 0.85834 0.79826 0.80463 0.77800 1.19489 1.20815 1.19510 1.21064 0.98319 0.95272 0.84580 1.23538 0.85736 0.74290 0.82857 1.90600 1.28192 1.38331 1.82094 1.84515 1.54079 1.69738 1.25986 1.21757 1.00090 0.89738 0.90059 1.16244 0.88172 0.91080 1.13675 1.25003 0.92923 0.93387 0.94039 1.81219 1.09376 1.08343 1.08587 0.88807 0.88879 0.87964 0.73021 0.91205 0.84969 0.90373 0.75043 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.64 101.05 0.97 -0.20 16 2 S -0.05 -0.60 21.68 -107.50 -2.33 -2.93 16 3 C 0.18 2.49 7.02 -16.22 -0.11 2.37 16 4 N -0.51 -7.50 9.11 -11.34 -0.10 -7.60 16 5 C 0.40 6.67 7.75 -16.50 -0.13 6.54 16 6 O -0.46 -7.84 12.76 -20.10 -0.26 -8.09 16 7 C -0.16 -2.93 4.93 -104.74 -0.52 -3.45 16 8 C 0.49 10.88 6.73 -12.64 -0.09 10.80 16 9 O -0.55 -14.44 16.40 2.72 0.04 -14.39 16 10 N -0.41 -9.39 2.12 -117.41 -0.25 -9.64 16 11 C -0.30 -7.45 9.39 -15.00 -0.14 -7.59 16 12 H 0.12 3.08 7.32 -52.49 -0.38 2.70 16 13 C 0.03 0.76 4.94 -17.45 -0.09 0.67 16 14 N -0.87 -20.69 8.75 55.50 0.49 -20.20 16 15 Si 0.94 18.89 29.62 -169.99 -5.04 13.85 16 16 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C 0.13 2.63 5.11 -5.19 -0.03 2.60 16 20 C 0.50 10.09 6.29 36.00 0.23 10.32 16 21 O -0.51 -12.02 16.83 -18.76 -0.32 -12.34 16 22 O -0.53 -8.86 13.42 -39.26 -0.53 -9.39 16 23 C 0.01 0.19 7.34 -38.49 -0.28 -0.10 16 24 C -0.08 -1.08 5.77 -106.45 -0.61 -1.70 16 25 C 0.26 3.62 14.28 -22.48 -0.32 3.30 16 26 N -0.40 -5.97 18.54 41.84 0.78 -5.20 16 27 H 0.09 0.86 8.12 -51.92 -0.42 0.44 16 28 H 0.09 0.82 8.12 -51.92 -0.42 0.40 16 29 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.41 5.52 9.06 45.56 0.41 5.93 16 31 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.13 2.68 6.34 -51.93 -0.33 2.35 16 33 H 0.08 1.27 4.44 -51.93 -0.23 1.04 16 34 H 0.39 4.95 9.10 45.56 0.41 5.37 16 35 H 0.16 2.04 7.58 -52.48 -0.40 1.65 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -32.12 336.26 -4.47 -36.59 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.91 Total: 10.69 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: -1.11 Total: 23.58 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.91 Total: -42.64 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.05 Total: -44.21 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.04 Total: 13.85 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.33 Total: -2.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.12 -4.47 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599804570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.299 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds