Wall clock time and date at job start Tue Mar 31 2020 19:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76205 * 99.99780 * 2 1 4 4 N 1.32526 * 119.61470 * 0.25136 * 3 2 1 5 5 C 1.32095 * 121.87103 * 180.31104 * 4 3 2 6 6 O 1.35300 * 119.58069 * 179.70975 * 5 4 3 7 7 C 1.40723 * 120.84692 * 359.43503 * 5 4 3 8 8 C 1.47164 * 120.43152 * 180.25297 * 7 5 4 9 9 O 1.21660 * 120.00076 * 55.01843 * 8 7 5 10 10 N 1.34775 * 120.00060 * 235.01481 * 8 7 5 11 11 C 1.36930 * 119.99993 * 185.77534 * 10 8 7 12 12 H 1.07997 * 120.00164 * 6.29045 * 11 10 8 13 13 C 1.38993 * 119.99912 * 186.28374 * 11 10 8 14 14 N 1.31405 * 120.00113 * 25.02252 * 13 11 10 15 15 Si 1.86804 * 120.00214 * 205.01926 * 13 11 10 16 16 H 1.48499 * 109.46803 * 59.99772 * 15 13 11 17 17 H 1.48498 * 109.47571 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46932 * 300.00091 * 15 13 11 19 19 C 1.46505 * 119.99821 * 5.78146 * 10 8 7 20 20 C 1.50695 * 109.47300 * 92.73855 * 19 10 8 21 21 O 1.20832 * 120.00157 * 359.97438 * 20 19 10 22 22 O 1.34230 * 120.00211 * 179.97438 * 20 19 10 23 23 C 1.39843 * 119.13968 * 0.27600 * 7 5 4 24 24 C 1.39568 * 118.30115 * 359.97438 * 23 7 5 25 25 C 1.43197 * 120.46578 * 180.02562 * 24 23 7 26 26 N 3.64656 * 171.15529 * 0.16905 * 2 1 3 27 27 H 1.09000 * 109.47109 * 299.99615 * 1 2 3 28 28 H 1.08991 * 109.47184 * 59.99768 * 1 2 3 29 29 H 1.08999 * 109.46427 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00020 * 269.73117 * 6 5 4 31 31 H 0.97005 * 119.99817 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.46789 * 212.73376 * 19 10 8 33 33 H 1.08999 * 109.47082 * 332.73754 * 19 10 8 34 34 H 0.96703 * 116.99876 * 179.97438 * 22 20 19 35 35 H 1.08006 * 120.85551 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0950 2.5803 0.0051 5 6 1.2729 3.8892 -0.0008 6 8 0.1969 4.7095 -0.0012 7 6 2.5673 4.4414 -0.0009 8 6 2.7549 5.9011 -0.0018 9 8 2.2331 6.5820 0.8608 10 7 3.5048 6.4835 -0.9583 11 6 3.7773 7.8238 -0.8932 12 1 3.4790 8.3940 -0.0259 13 6 4.4381 8.4504 -1.9432 14 7 4.3735 7.9457 -3.1548 15 14 5.4179 10.0102 -1.6323 16 1 6.4934 9.7310 -0.6472 17 1 6.0216 10.4778 -2.9059 18 1 4.5169 11.0622 -1.0966 19 6 4.0282 5.6826 -2.0677 20 6 3.0653 5.7382 -3.2256 21 8 2.0460 6.3806 -3.1334 22 8 3.3398 5.0741 -4.3594 23 6 3.6729 3.5853 -0.0005 24 6 3.4437 2.2085 0.0005 25 6 4.5420 1.2896 0.0015 26 7 5.4132 0.5607 0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.1158 4.9476 -0.8847 31 1 4.8350 8.3829 -3.8875 32 1 4.9941 6.0805 -2.3790 33 1 4.1483 4.6486 -1.7444 34 1 2.6919 5.1395 -5.0743 35 1 4.6786 3.9792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599804570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:43 Heat of formation + Delta-G solvation = -94.035132 kcal Electronic energy + Delta-G solvation = -27134.247702 eV Core-core repulsion = 23031.658408 eV Total energy + Delta-G solvation = -4102.589294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13805 -40.91965 -39.74483 -38.69350 -37.45334 -37.02865 -36.33576 -34.54647 -33.49549 -32.07666 -29.85265 -29.56208 -27.42206 -25.70116 -25.34722 -22.92272 -22.18030 -20.43184 -19.88655 -19.03448 -18.97124 -18.61324 -18.21042 -17.58576 -17.24138 -16.80774 -16.45581 -16.18984 -15.93709 -15.64087 -15.23403 -14.96985 -14.83644 -14.78794 -14.49521 -14.25525 -13.88527 -13.80975 -13.64358 -13.55511 -13.43938 -13.28988 -13.00762 -12.72831 -12.40394 -12.16451 -12.10297 -11.82072 -11.58537 -11.28845 -11.17428 -10.96449 -10.69151 -10.46834 -10.01562 -8.80710 -8.52832 -5.93364 -0.92668 -0.44102 0.15846 1.01605 1.30304 1.44233 1.47327 1.50107 1.57073 1.69575 1.84275 2.18780 2.30053 2.40121 2.51817 2.66421 2.82735 3.11365 3.35137 3.52992 3.65033 3.97632 4.11901 4.33737 4.36494 4.41360 4.47437 4.72118 4.78996 4.90319 4.99972 5.43499 5.86307 5.96703 6.10663 6.26327 6.31659 6.44510 7.02423 7.21274 7.43772 7.81477 8.53214 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.004058 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.686138 B = 6897.684729 C = 7106.579412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.035 6.035 3 C 0.186 3.814 4 N -0.503 5.503 5 C 0.396 3.604 6 O -0.475 6.475 7 C -0.191 4.191 8 C 0.490 3.510 9 O -0.603 6.603 10 N -0.422 5.422 11 C -0.336 4.336 12 H 0.087 0.913 13 C 0.008 3.992 14 N -0.882 5.882 15 Si 0.991 3.009 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.281 1.281 19 C 0.134 3.866 20 C 0.500 3.500 21 O -0.547 6.547 22 O -0.519 6.519 23 C 0.030 3.970 24 C -0.075 4.075 25 C 0.279 3.721 26 N -0.414 5.414 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.421 0.579 31 H 0.280 0.720 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.413 0.587 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -14.396 -1.659 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.206 5.794 3 C -0.067 4.067 4 N -0.226 5.226 5 C 0.212 3.788 6 O -0.285 6.285 7 C -0.202 4.202 8 C 0.280 3.720 9 O -0.488 6.488 10 N -0.139 5.139 11 C -0.463 4.463 12 H 0.105 0.895 13 C -0.194 4.194 14 N -0.520 5.520 15 Si 0.815 3.185 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.207 1.207 19 C 0.009 3.991 20 C 0.342 3.658 21 O -0.435 6.435 22 O -0.331 6.331 23 C 0.001 3.999 24 C -0.088 4.088 25 C -0.037 4.037 26 N -0.089 5.089 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.151 0.849 30 H 0.283 0.717 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.273 0.727 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.301 -16.336 -0.525 16.397 hybrid contribution -0.840 3.141 -1.044 3.415 sum -2.140 -13.195 -1.570 13.460 Atomic orbital electron populations 1.23652 0.90985 1.08144 1.07468 1.86035 1.11097 0.93462 1.88805 1.23486 0.88993 1.00223 0.93961 1.67646 1.32990 1.02759 1.19193 1.19222 0.85219 0.85795 0.88544 1.84630 1.45082 1.63603 1.35193 1.20889 0.94495 0.94925 1.09865 1.17678 0.82098 0.86676 0.85596 1.90662 1.51377 1.65160 1.41645 1.43588 1.43070 1.08347 1.18923 1.19673 1.36463 0.85268 1.04887 0.89531 1.25902 0.97839 1.02468 0.93235 1.69770 1.39843 1.42985 0.99417 0.85019 0.78432 0.77091 0.77984 1.18684 1.19750 1.20675 1.21149 0.97543 0.96556 0.83890 1.23577 0.84991 0.73568 0.83621 1.90589 1.29813 1.40212 1.82933 1.84447 1.54483 1.68561 1.25612 1.21852 0.99998 0.89838 0.88236 1.16119 0.88338 0.90509 1.13824 1.24761 0.92469 0.92947 0.93524 1.81253 1.09719 1.08833 1.09118 0.89108 0.88746 0.84914 0.71663 0.90963 0.85538 0.86984 0.72711 0.80388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.64 113.37 1.09 -0.78 16 2 S -0.04 -0.68 21.68 -56.49 -1.22 -1.90 16 3 C 0.19 4.64 7.02 85.25 0.60 5.24 16 4 N -0.50 -14.06 9.11 -302.93 -2.76 -16.81 16 5 C 0.40 13.20 7.75 85.26 0.66 13.86 16 6 O -0.48 -16.52 12.76 -83.47 -1.06 -17.58 16 7 C -0.19 -6.79 4.93 -19.94 -0.10 -6.89 16 8 C 0.49 22.59 6.73 86.59 0.58 23.18 16 9 O -0.60 -33.19 16.40 -1.83 -0.03 -33.22 16 10 N -0.42 -19.67 2.12 -643.60 -1.36 -21.04 16 11 C -0.34 -17.51 9.39 84.08 0.79 -16.72 16 12 H 0.09 4.91 7.32 -2.91 -0.02 4.89 16 13 C 0.01 0.41 4.94 84.94 0.42 0.83 16 14 N -0.88 -41.84 8.75 21.67 0.19 -41.65 16 15 Si 0.99 39.09 29.62 68.60 2.03 41.12 16 16 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 17 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 19 C 0.13 5.21 5.11 85.63 0.44 5.65 16 20 C 0.50 20.10 6.29 71.23 0.45 20.55 16 21 O -0.55 -26.19 16.83 21.95 0.37 -25.82 16 22 O -0.52 -16.29 13.42 -51.42 -0.69 -16.99 16 23 C 0.03 0.82 7.34 22.98 0.17 0.99 16 24 C -0.08 -1.88 5.77 -21.05 -0.12 -2.01 16 25 C 0.28 6.97 14.28 88.33 1.26 8.23 16 26 N -0.41 -11.33 18.54 19.00 0.35 -10.98 16 27 H 0.09 1.40 8.12 -2.39 -0.02 1.39 16 28 H 0.09 1.37 8.12 -2.40 -0.02 1.35 16 29 H 0.13 1.09 8.14 -2.40 -0.02 1.07 16 30 H 0.42 11.70 9.06 -74.06 -0.67 11.03 16 31 H 0.28 12.60 8.31 -92.70 -0.77 11.83 16 32 H 0.13 5.08 6.34 -2.39 -0.02 5.07 16 33 H 0.11 3.48 4.44 -2.39 -0.01 3.47 16 34 H 0.41 9.53 9.10 -74.06 -0.67 8.86 16 35 H 0.18 4.22 7.58 -2.91 -0.02 4.20 16 Total: -1.00 -71.08 336.26 1.93 -69.16 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.12 Total: 23.58 kcal Atomic # 6 Polarization: 45.89 SS G_CDS: 6.24 Total: 52.13 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -3.58 Total: -90.48 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -1.42 Total: -93.61 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -1.22 Total: -1.90 kcal Total: -71.08 1.93 -69.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599804570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.879 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds