Wall clock time and date at job start Tue Mar 31 2020 20:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47299 * 239.99667 * 3 2 1 5 5 H 1.48500 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46998 * 119.99358 * 3 2 1 7 7 C 1.39047 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00176 * 193.34828 * 7 2 1 9 9 N 1.36828 * 120.00020 * 13.07735 * 7 2 1 10 10 C 1.46498 * 119.99989 * 44.80773 * 9 7 2 11 11 C 1.52997 * 109.47372 * 90.00116 * 10 9 7 12 12 C 1.50697 * 109.47532 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99920 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00124 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99840 * 224.81167 * 9 7 2 16 16 O 1.21711 * 119.99427 * 185.74038 * 15 9 7 17 17 C 1.46783 * 120.00292 * 5.74014 * 15 9 7 18 18 C 1.33843 * 124.66726 * 186.52408 * 17 15 9 19 19 C 1.40355 * 115.55809 * 179.97438 * 18 17 15 20 20 C 1.41618 * 128.80227 * 179.97438 * 19 18 17 21 21 C 1.35874 * 120.52953 * 179.97438 * 20 19 18 22 22 C 1.39199 * 120.66288 * 0.02582 * 21 20 19 23 23 F 1.35107 * 119.93380 * 179.97438 * 22 21 20 24 24 C 1.37664 * 120.13142 * 359.97218 * 22 21 20 25 25 C 1.39814 * 120.16919 * 0.02642 * 24 22 21 26 26 S 1.75479 * 124.66431 * 6.22185 * 17 15 9 27 27 H 0.96998 * 120.00156 * 5.00311 * 1 2 3 28 28 H 1.09002 * 109.47232 * 210.00027 * 10 9 7 29 29 H 1.09002 * 109.47581 * 330.00289 * 10 9 7 30 30 H 1.09007 * 109.47295 * 300.00281 * 11 10 9 31 31 H 1.09008 * 109.46614 * 60.00017 * 11 10 9 32 32 H 0.96692 * 116.99905 * 180.02562 * 14 12 11 33 33 H 1.07999 * 122.21517 * 359.97438 * 18 17 15 34 34 H 1.08006 * 119.73545 * 359.97438 * 20 19 18 35 35 H 1.08000 * 119.66330 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.91201 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1015 1.6964 -1.2124 5 1 1.2827 2.7464 0.0006 6 1 3.1013 1.6964 1.2126 7 6 2.0089 -1.2042 0.0005 8 1 3.0671 -1.2167 0.2165 9 7 1.3515 -2.3739 -0.2671 10 6 0.4052 -2.4435 -1.3833 11 6 1.1453 -2.8672 -2.6536 12 6 0.1719 -2.9394 -3.8017 13 8 -0.9941 -2.6783 -3.6225 14 8 0.6003 -3.2929 -5.0237 15 6 1.5743 -3.4620 0.4964 16 8 1.0710 -4.5289 0.1968 17 6 2.4239 -3.3604 1.6890 18 6 2.8082 -4.3990 2.4407 19 6 3.6222 -4.0828 3.5396 20 6 4.1816 -4.9510 4.5085 21 6 4.9539 -4.4590 5.5123 22 6 5.2091 -3.0939 5.6077 23 9 5.9786 -2.6206 6.6123 24 6 4.6790 -2.2253 4.6806 25 6 3.8816 -2.7098 3.6393 26 16 3.0816 -1.8613 2.3211 27 1 -0.4850 0.8368 -0.0733 28 1 -0.3724 -3.1726 -1.1556 29 1 -0.0485 -1.4644 -1.5367 30 1 1.9230 -2.1381 -2.8814 31 1 1.5990 -3.8465 -2.5002 32 1 -0.0609 -3.3248 -5.7285 33 1 2.5116 -5.4130 2.2165 34 1 3.9929 -6.0128 4.4490 35 1 5.3731 -5.1337 6.2439 36 1 4.8796 -1.1669 4.7578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:59 Heat of formation + Delta-G solvation = -129.323946 kcal Electronic energy + Delta-G solvation = -25836.634339 eV Core-core repulsion = 21712.594845 eV Total energy + Delta-G solvation = -4124.039494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.75538 -39.94636 -39.28785 -38.65033 -35.93542 -35.36936 -34.32461 -32.34628 -31.04606 -30.85275 -28.59423 -25.65996 -24.89573 -23.44230 -22.78960 -21.06759 -20.15074 -19.46113 -18.34383 -17.83788 -17.28490 -16.73514 -16.20645 -15.85300 -15.68169 -15.46715 -15.38700 -15.00429 -14.56739 -14.46940 -14.11152 -13.65106 -13.42438 -13.06245 -12.88784 -12.78067 -12.66744 -12.49422 -12.02347 -11.94191 -11.51365 -11.37045 -11.25071 -11.23649 -10.94812 -10.63929 -10.49219 -10.30813 -10.23326 -9.99641 -9.43498 -9.33431 -8.95936 -8.00479 -7.90065 -7.21163 -6.76276 -4.64572 0.73237 1.40513 2.14584 2.33293 2.57078 2.66578 2.96207 3.01387 3.02333 3.31685 3.73705 3.80658 4.10416 4.42537 4.44189 4.64619 4.90175 5.04255 5.36519 5.42964 5.46911 5.65698 5.72792 5.85230 5.96573 6.05660 6.15656 6.18557 6.27154 6.31891 6.55733 6.71896 6.74496 6.78999 6.92040 7.04387 7.12404 7.50881 7.89597 8.20851 8.59367 9.03297 9.47504 10.18552 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003724 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.200788 B = 7517.530507 C = 8990.331691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.350 4.350 8 H 0.106 0.894 9 N -0.430 5.430 10 C 0.132 3.868 11 C -0.126 4.126 12 C 0.484 3.516 13 O -0.515 6.515 14 O -0.524 6.524 15 C 0.536 3.464 16 O -0.585 6.585 17 C -0.171 4.171 18 C -0.093 4.093 19 C -0.087 4.087 20 C -0.050 4.050 21 C -0.165 4.165 22 C 0.095 3.905 23 F -0.145 7.145 24 C -0.115 4.115 25 C -0.191 4.191 26 S 0.236 5.764 27 H 0.282 0.718 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.402 0.598 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -2.231 1.425 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.150 4.150 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.123 0.877 9 N -0.147 5.147 10 C 0.008 3.992 11 C -0.165 4.165 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.335 6.335 15 C 0.325 3.675 16 O -0.471 6.471 17 C -0.290 4.290 18 C -0.126 4.126 19 C -0.096 4.096 20 C -0.070 4.070 21 C -0.186 4.186 22 C 0.073 3.927 23 F -0.123 7.123 24 C -0.138 4.138 25 C -0.306 4.306 26 S 0.513 5.487 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.242 -0.973 1.308 6.451 hybrid contribution 0.145 -0.578 0.156 0.616 sum 6.387 -1.551 1.464 6.733 Atomic orbital electron populations 1.69846 1.06464 1.29672 1.39752 1.25641 0.95243 1.00347 0.93737 0.86252 0.79887 0.80438 0.80308 1.18864 1.20087 1.18318 1.19453 0.93715 0.84101 1.51241 0.87726 1.43176 1.38285 1.09215 1.24014 1.21184 0.90768 1.04637 0.82576 1.21847 0.98191 1.05193 0.91288 1.23717 0.88837 0.71769 0.83063 1.90708 1.19832 1.45537 1.84166 1.84585 1.46722 1.81832 1.20384 1.17526 0.82572 0.85277 0.82151 1.90692 1.54607 1.28742 1.73044 1.23857 1.05420 0.97462 1.02307 1.19965 0.98623 1.00144 0.93850 1.18206 1.01315 0.92634 0.97412 1.20639 0.94776 0.99220 0.92379 1.20460 1.03303 0.93524 1.01315 1.17485 0.95156 0.92561 0.87532 1.91464 1.73140 1.89111 1.58624 1.20280 0.99709 0.99571 0.94231 1.24751 1.02655 0.99439 1.03727 1.85935 1.44354 1.04926 1.13521 0.90747 0.91174 0.86945 0.87480 0.88157 0.74010 0.83897 0.85216 0.85106 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.53 11.48 55.50 0.64 -18.89 16 2 C 0.06 1.41 5.10 -17.45 -0.09 1.32 16 3 Si 0.91 17.00 29.58 -169.99 -5.03 11.98 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.35 -7.71 6.59 -15.02 -0.10 -7.80 16 8 H 0.11 2.21 5.77 -37.10 -0.21 2.00 16 9 N -0.43 -9.78 2.46 -116.26 -0.29 -10.07 16 10 C 0.13 2.89 4.23 -4.04 -0.02 2.87 16 11 C -0.13 -2.28 6.13 -27.89 -0.17 -2.45 16 12 C 0.48 8.23 8.33 36.00 0.30 8.53 16 13 O -0.51 -10.28 16.74 -18.75 -0.31 -10.59 16 14 O -0.52 -6.91 13.42 -39.26 -0.53 -7.44 16 15 C 0.54 12.44 7.59 -12.81 -0.10 12.35 16 16 O -0.58 -14.60 16.38 5.18 0.08 -14.52 16 17 C -0.17 -3.54 6.16 -37.67 -0.23 -3.77 16 18 C -0.09 -1.73 9.79 -40.33 -0.39 -2.12 16 19 C -0.09 -1.46 5.87 -107.12 -0.63 -2.09 16 20 C -0.05 -0.70 10.03 -39.14 -0.39 -1.09 16 21 C -0.16 -2.16 9.92 -40.07 -0.40 -2.56 16 22 C 0.10 1.38 7.29 -39.43 -0.29 1.10 16 23 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 24 C -0.12 -1.78 10.05 -39.20 -0.39 -2.17 16 25 C -0.19 -3.30 6.50 -38.30 -0.25 -3.55 16 26 S 0.24 4.47 18.60 -107.50 -2.00 2.47 16 27 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 28 H 0.07 1.66 7.46 -51.93 -0.39 1.27 16 29 H 0.11 2.64 5.71 -51.93 -0.30 2.34 16 30 H 0.11 1.81 8.14 -51.92 -0.42 1.38 16 31 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 32 H 0.40 3.39 9.10 45.56 0.41 3.80 16 33 H 0.14 2.51 7.97 -52.49 -0.42 2.10 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -27.87 335.61 -7.64 -35.51 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -2.15 Total: 9.95 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.15 Total: -1.44 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.35 Total: -28.96 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.76 Total: -32.54 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -2.00 Total: 2.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.87 -7.64 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.814 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds