Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 C 1.37844 * 119.93254 * 269.72377 * 17 16 15 19 19 C 1.39694 * 119.86754 * 179.77002 * 18 17 16 20 20 C 1.47604 * 120.11829 * 180.22740 * 19 18 17 21 21 O 1.21489 * 119.99733 * 0.27706 * 20 19 18 22 22 O 1.34725 * 119.99973 * 180.27395 * 20 19 18 23 23 C 1.39716 * 119.75848 * 0.50111 * 19 18 17 24 24 C 1.37806 * 119.87346 * 359.74871 * 23 19 18 25 25 C 1.38646 * 119.94137 * 89.99226 * 17 16 15 26 26 F 1.35092 * 119.87584 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 28 28 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 29 29 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 32 32 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 33 33 H 1.07994 * 120.06483 * 0.02562 * 18 17 16 34 34 H 0.96703 * 117.00267 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.06308 * 179.73087 * 23 19 18 36 36 H 1.07997 * 119.93641 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 6 3.1333 -5.7693 1.1871 19 6 2.9555 -7.1549 1.1816 20 6 2.8577 -7.8941 2.4555 21 8 2.9270 -7.2969 3.5112 22 8 2.6917 -9.2310 2.4474 23 6 2.8761 -7.8390 -0.0340 24 6 2.9685 -7.1438 -1.2202 25 6 3.1398 -5.7676 -1.2089 26 9 3.2305 -5.0912 -2.3747 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.5753 4.9451 0.0271 31 1 3.9654 -3.2897 -0.8880 32 1 3.9563 -3.2928 0.8919 33 1 3.1993 -5.2360 2.1238 34 1 2.6334 -9.6714 3.3064 35 1 2.7430 -8.9108 -0.0439 36 1 2.9077 -7.6717 -2.1604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608087689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = -55.392353 kcal Electronic energy + Delta-G solvation = -25088.387861 eV Core-core repulsion = 20999.847032 eV Total energy + Delta-G solvation = -4088.540828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.26656 -40.96840 -40.77812 -39.02567 -36.46502 -33.98706 -33.68378 -33.35234 -31.38701 -30.07611 -27.63845 -26.73012 -25.30562 -25.00834 -22.75862 -21.56410 -21.32952 -20.21253 -18.47507 -18.23487 -18.06197 -17.41620 -16.80393 -16.56331 -16.19457 -15.87031 -15.32714 -15.09537 -14.90280 -14.35306 -14.16835 -13.95143 -13.82031 -13.58381 -13.26072 -13.11169 -12.83898 -12.71785 -12.54172 -12.46421 -11.99279 -11.90721 -11.47273 -11.18707 -11.04293 -10.90674 -10.61050 -9.94253 -9.61189 -9.45219 -9.42663 -9.13937 -9.11851 -8.71697 -8.42577 -7.45519 -7.16603 -4.87679 0.10319 0.61364 1.73663 2.14617 2.49853 2.56390 2.87032 3.23697 3.55475 3.57986 3.75583 3.84379 4.02232 4.10252 4.12279 4.26810 4.39437 4.54747 4.65282 4.74392 5.08021 5.17057 5.30374 5.35043 5.44548 5.60775 5.69903 5.70393 5.75700 5.82095 5.88155 6.06287 6.27947 6.33803 6.61037 7.08204 7.36969 7.48155 7.49010 8.01663 8.31512 8.52280 9.93264 10.07082 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002653 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.061399 B =10551.298864 C =10795.306901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.512 5.512 3 C 0.346 3.654 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.806 5.806 8 Si 1.112 2.888 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.268 5.268 14 C 0.063 3.937 15 S -0.031 6.031 16 C -0.059 4.059 17 C -0.117 4.117 18 C -0.006 4.006 19 C -0.144 4.144 20 C 0.530 3.470 21 O -0.508 6.508 22 O -0.513 6.513 23 C -0.029 4.029 24 C -0.169 4.169 25 C 0.157 3.843 26 F -0.119 7.119 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.283 0.717 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.416 0.584 35 H 0.150 0.850 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -25.451 -0.008 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.213 5.213 3 C 0.103 3.897 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.158 4.158 7 N -0.430 5.430 8 Si 0.941 3.059 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.112 5.112 14 C -0.310 4.310 15 S 0.199 5.801 16 C -0.207 4.207 17 C -0.119 4.119 18 C -0.026 4.026 19 C -0.145 4.145 20 C 0.374 3.626 21 O -0.397 6.397 22 O -0.325 6.325 23 C -0.048 4.048 24 C -0.187 4.187 25 C 0.136 3.864 26 F -0.098 7.098 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.171 0.829 34 H 0.275 0.725 35 H 0.167 0.833 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.945 -24.813 -0.265 24.832 hybrid contribution -2.227 -0.042 0.502 2.283 sum -3.171 -24.855 0.237 25.057 Atomic orbital electron populations 1.21545 0.77725 1.02977 1.02051 1.45821 1.06420 1.04828 1.64240 1.21720 0.85101 0.89067 0.93832 1.19403 0.97446 0.87210 1.49093 0.89859 1.27363 1.08499 0.91260 0.88722 1.70674 1.21582 1.18458 1.32274 0.82706 0.70574 0.72180 0.80480 1.24098 1.18560 1.20674 1.73995 1.15915 1.00862 1.35723 1.74254 1.15367 1.05667 1.15895 1.25383 0.90941 0.93111 1.21602 1.84729 1.09137 0.90790 1.95490 1.22173 0.98794 0.90793 1.08931 1.19353 1.05559 0.95072 0.91939 1.21103 0.91151 0.91922 0.98413 1.18982 1.11212 0.93288 0.91043 1.20685 0.72378 0.80310 0.89201 1.90939 1.46220 1.69356 1.33153 1.84529 1.84945 1.21853 1.41215 1.21316 0.92618 1.00800 0.90090 1.21138 1.05361 0.91977 1.00263 1.17899 0.97153 0.90116 0.81225 1.91580 1.92428 1.80144 1.45602 0.92112 0.91178 0.90209 0.90526 0.87295 0.87073 0.82917 0.72492 0.83272 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.89 59.85 0.65 2.45 16 2 N -0.51 -11.88 3.26 -123.18 -0.40 -12.28 16 3 C 0.35 9.25 7.27 -154.81 -1.13 8.12 16 4 C -0.49 -13.19 9.50 -38.31 -0.36 -13.55 16 5 H 0.08 2.17 7.47 -52.49 -0.39 1.78 16 6 C 0.06 1.74 5.52 -17.29 -0.10 1.65 16 7 N -0.81 -21.66 13.65 55.56 0.76 -20.91 16 8 Si 1.11 28.13 25.90 -169.99 -4.40 23.72 16 9 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.26 -6.78 6.76 56.52 0.38 -6.39 16 11 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 12 N -0.41 -11.54 7.51 31.26 0.23 -11.31 16 13 N -0.27 -6.85 11.62 30.89 0.36 -6.49 16 14 C 0.06 1.43 8.09 -87.28 -0.71 0.73 16 15 S -0.03 -0.52 21.77 -107.50 -2.34 -2.86 16 16 C -0.06 -0.86 5.17 36.01 0.19 -0.67 16 17 C -0.12 -1.36 5.13 -104.61 -0.54 -1.90 16 18 C -0.01 -0.06 9.24 -39.18 -0.36 -0.42 16 19 C -0.14 -1.32 5.87 -104.98 -0.62 -1.94 16 20 C 0.53 4.91 8.27 34.55 0.29 5.19 16 21 O -0.51 -6.37 17.13 -19.26 -0.33 -6.70 16 22 O -0.51 -2.97 12.68 -40.56 -0.51 -3.48 16 23 C -0.03 -0.21 9.61 -39.19 -0.38 -0.59 16 24 C -0.17 -1.31 10.01 -39.57 -0.40 -1.70 16 25 C 0.16 1.68 7.25 -39.26 -0.28 1.40 16 26 F -0.12 -1.48 16.46 2.25 0.04 -1.44 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 29 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 30 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16 31 H 0.11 1.70 7.63 -51.91 -0.40 1.30 16 32 H 0.11 1.64 8.08 -51.92 -0.42 1.22 16 33 H 0.15 1.67 7.65 -52.49 -0.40 1.27 16 34 H 0.42 0.66 9.11 45.56 0.42 1.08 16 35 H 0.15 0.70 7.61 -52.48 -0.40 0.30 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -34.23 340.56 -7.61 -41.84 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -2.41 Total: -4.00 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.74 Total: -1.23 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.95 Total: -50.99 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.84 Total: -10.18 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 28.13 SS G_CDS: -4.40 Total: 23.72 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.34 Total: -2.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.23 -7.61 -41.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608087689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds