Wall clock time and date at job start Tue Mar 31 2020 20:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 C 1.37844 * 119.93254 * 269.72377 * 17 16 15 19 19 C 1.39694 * 119.86754 * 179.77002 * 18 17 16 20 20 C 1.47604 * 120.11829 * 180.22740 * 19 18 17 21 21 O 1.21489 * 119.99733 * 0.27706 * 20 19 18 22 22 O 1.34725 * 119.99973 * 180.27395 * 20 19 18 23 23 C 1.39716 * 119.75848 * 0.50111 * 19 18 17 24 24 C 1.37806 * 119.87346 * 359.74871 * 23 19 18 25 25 C 1.38646 * 119.94137 * 89.99226 * 17 16 15 26 26 F 1.35092 * 119.87584 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 28 28 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 29 29 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 32 32 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 33 33 H 1.07994 * 120.06483 * 0.02562 * 18 17 16 34 34 H 0.96703 * 117.00267 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.06308 * 179.73087 * 23 19 18 36 36 H 1.07997 * 119.93641 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 6 3.1333 -5.7693 1.1871 19 6 2.9555 -7.1549 1.1816 20 6 2.8577 -7.8941 2.4555 21 8 2.9270 -7.2969 3.5112 22 8 2.6917 -9.2310 2.4474 23 6 2.8761 -7.8390 -0.0340 24 6 2.9685 -7.1438 -1.2202 25 6 3.1398 -5.7676 -1.2089 26 9 3.2305 -5.0912 -2.3747 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.5753 4.9451 0.0271 31 1 3.9654 -3.2897 -0.8880 32 1 3.9563 -3.2928 0.8919 33 1 3.1993 -5.2360 2.1238 34 1 2.6334 -9.6714 3.3064 35 1 2.7430 -8.9108 -0.0439 36 1 2.9077 -7.6717 -2.1604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608087689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:15 Heat of formation + Delta-G solvation = -76.652940 kcal Electronic energy + Delta-G solvation = -25089.309789 eV Core-core repulsion = 20999.847032 eV Total energy + Delta-G solvation = -4089.462757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.13713 -42.87934 -41.48007 -39.76312 -37.10038 -35.96518 -35.45336 -34.29388 -32.11597 -32.03417 -28.80297 -28.26495 -27.16106 -25.73558 -23.59000 -23.32343 -22.33808 -21.89270 -20.21970 -19.17664 -18.91655 -18.35353 -17.98082 -17.48846 -17.23338 -16.94613 -16.83645 -16.59868 -15.95868 -15.76566 -15.58568 -15.11497 -14.88107 -14.76832 -14.70287 -14.36289 -14.23858 -13.98864 -13.62962 -13.54074 -13.34722 -13.12022 -12.87955 -12.57904 -12.25475 -12.07704 -11.87392 -11.80135 -11.57710 -11.43753 -10.95103 -10.60537 -10.41653 -10.19435 -9.95152 -9.51095 -8.76652 -6.88991 -0.65760 -0.24565 0.44347 0.95150 1.03798 1.40629 1.52724 1.57594 1.92026 1.96509 2.09907 2.18171 2.40135 2.50063 2.98603 3.02131 3.19579 3.52531 3.81395 3.90104 3.91288 3.99228 4.29451 4.30749 4.44187 4.47262 4.52794 4.64584 4.71442 4.73809 4.92175 4.98468 5.07978 5.19793 5.34992 5.54908 5.56911 5.65271 5.98295 6.36486 6.54026 6.94324 7.90404 8.11599 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002653 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.061399 B =10551.298864 C =10795.306901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.515 5.515 3 C 0.325 3.675 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.043 3.957 7 N -0.821 5.821 8 Si 1.144 2.856 9 H -0.296 1.296 10 H -0.278 1.278 11 H -0.295 1.295 12 N -0.447 5.447 13 N -0.309 5.309 14 C 0.078 3.922 15 S 0.012 5.988 16 C -0.055 4.055 17 C -0.131 4.131 18 C -0.012 4.012 19 C -0.149 4.149 20 C 0.538 3.462 21 O -0.548 6.548 22 O -0.498 6.498 23 C -0.006 4.006 24 C -0.154 4.154 25 C 0.144 3.856 26 F -0.133 7.133 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.287 0.713 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.436 0.564 35 H 0.185 0.815 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -29.334 -0.492 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.079 3.921 4 C -0.548 4.548 5 H 0.103 0.897 6 C -0.178 4.178 7 N -0.446 5.446 8 Si 0.973 3.027 9 H -0.225 1.225 10 H -0.204 1.204 11 H -0.222 1.222 12 N -0.296 5.296 13 N -0.151 5.151 14 C -0.297 4.297 15 S 0.241 5.759 16 C -0.203 4.203 17 C -0.134 4.134 18 C -0.032 4.032 19 C -0.151 4.151 20 C 0.384 3.616 21 O -0.441 6.441 22 O -0.312 6.312 23 C -0.024 4.024 24 C -0.172 4.172 25 C 0.123 3.877 26 F -0.111 7.111 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.299 0.701 35 H 0.203 0.797 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.104 -28.706 -0.748 28.793 hybrid contribution -1.954 0.739 0.667 2.193 sum -4.058 -27.967 -0.081 28.260 Atomic orbital electron populations 1.21916 0.74635 1.04644 1.03794 1.46194 1.08399 1.04090 1.62769 1.21813 0.85686 0.89940 0.94709 1.19404 0.97485 0.87507 1.50413 0.89724 1.27745 1.09668 0.91508 0.88853 1.70663 1.21917 1.18401 1.33639 0.82220 0.69713 0.71831 0.78888 1.22536 1.20440 1.22224 1.73867 1.17088 1.02166 1.36473 1.74187 1.17085 1.04937 1.18921 1.26514 0.90353 0.95870 1.16923 1.84600 1.10617 0.86104 1.94579 1.22168 0.97193 0.92985 1.07968 1.19079 1.08181 0.93070 0.93045 1.21019 0.91684 0.92950 0.97590 1.19088 1.11116 0.92690 0.92160 1.20642 0.71381 0.81144 0.88478 1.90937 1.48246 1.70399 1.34480 1.84473 1.83945 1.19900 1.42858 1.21698 0.89802 1.02267 0.88677 1.21483 1.03320 0.90459 1.01927 1.18171 0.97941 0.91349 0.80264 1.91550 1.92695 1.80686 1.46207 0.90265 0.88354 0.89748 0.90201 0.88616 0.87771 0.83954 0.70136 0.79743 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.89 127.77 1.39 4.51 16 2 N -0.51 -23.68 3.26 -543.63 -1.77 -25.45 16 3 C 0.33 17.67 7.27 133.23 0.97 18.64 16 4 C -0.51 -27.74 9.50 23.09 0.22 -27.52 16 5 H 0.08 4.47 7.47 -2.91 -0.02 4.44 16 6 C 0.04 2.35 5.52 85.29 0.47 2.82 16 7 N -0.82 -44.60 13.65 21.86 0.30 -44.31 16 8 Si 1.14 58.93 25.90 68.60 1.78 60.71 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.28 -14.95 6.76 99.48 0.67 -14.28 16 11 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 12 N -0.45 -25.52 7.51 -55.02 -0.41 -25.93 16 13 N -0.31 -16.10 11.62 -56.17 -0.65 -16.75 16 14 C 0.08 3.53 8.09 179.18 1.45 4.98 16 15 S 0.01 0.39 21.77 -56.49 -1.23 -0.84 16 16 C -0.05 -1.60 5.17 71.24 0.37 -1.23 16 17 C -0.13 -2.91 5.13 -19.86 -0.10 -3.01 16 18 C -0.01 -0.25 9.24 22.53 0.21 -0.04 16 19 C -0.15 -2.33 5.87 -20.10 -0.12 -2.45 16 20 C 0.54 8.60 8.27 70.29 0.58 9.18 16 21 O -0.55 -13.14 17.13 19.87 0.34 -12.80 16 22 O -0.50 -3.84 12.68 -56.35 -0.71 -4.56 16 23 C -0.01 -0.06 9.61 22.52 0.22 0.16 16 24 C -0.15 -1.74 10.01 22.28 0.22 -1.52 16 25 C 0.14 2.77 7.25 22.48 0.16 2.93 16 26 F -0.13 -3.10 16.46 44.97 0.74 -2.36 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.10 2.75 7.85 -2.39 -0.02 2.74 16 29 H 0.08 2.79 7.48 -2.39 -0.02 2.77 16 30 H 0.29 14.80 8.72 -92.71 -0.81 13.99 16 31 H 0.10 3.04 7.63 -2.39 -0.02 3.03 16 32 H 0.10 3.15 8.08 -2.40 -0.02 3.13 16 33 H 0.14 3.12 7.65 -2.91 -0.02 3.10 16 34 H 0.44 -0.17 9.11 -74.05 -0.67 -0.84 16 35 H 0.19 0.57 7.61 -2.91 -0.02 0.55 16 36 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -76.24 340.56 4.83 -71.41 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: 0.42 Total: -6.58 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.04 Total: 7.46 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -2.54 Total: -112.44 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.74 Total: -2.36 kcal Atomic # 14 Polarization: 58.93 SS G_CDS: 1.78 Total: 60.71 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.23 Total: -0.84 kcal Total: -76.24 4.83 -71.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608087689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.242 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds