Wall clock time and date at job start Tue Mar 31 2020 19:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21426 * 120.00049 * 359.97438 * 17 16 15 19 19 C 1.41500 * 120.00205 * 179.97438 * 17 16 15 20 20 C 1.36539 * 125.68561 * 180.02562 * 19 17 16 21 21 C 1.41552 * 106.59172 * 180.02562 * 20 19 17 22 22 C 1.47374 * 126.75700 * 180.02562 * 21 20 19 23 23 O 1.21516 * 120.00468 * 359.97438 * 22 21 20 24 24 O 1.34752 * 119.99645 * 179.97438 * 22 21 20 25 25 C 1.38048 * 106.47985 * 359.97438 * 21 20 19 26 26 O 1.33429 * 108.40965 * 359.74128 * 25 21 20 27 27 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 29 29 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 32 32 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 33 33 H 1.08001 * 126.70484 * 359.97438 * 20 19 17 34 34 H 0.96699 * 117.00010 * 179.97438 * 24 22 21 35 35 H 1.08004 * 125.79646 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1005 -5.5556 -0.0069 19 6 4.3475 -5.9374 0.0031 20 6 4.3133 -7.3024 0.0017 21 6 5.6593 -7.7404 0.0084 22 6 6.1326 -9.1361 0.0090 23 8 5.3312 -10.0495 0.0039 24 8 7.4541 -9.3993 0.0153 25 6 6.4413 -6.6028 0.0130 26 8 5.6368 -5.5383 0.0036 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.5753 4.9451 0.0298 31 1 3.9654 -3.2905 -0.8867 32 1 3.9562 -3.2921 0.8932 33 1 3.4315 -7.9260 -0.0028 34 1 7.7164 -10.3301 0.0159 35 1 7.5211 -6.5784 0.0189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610597998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:42 Heat of formation + Delta-G solvation = -44.826016 kcal Electronic energy + Delta-G solvation = -24736.501992 eV Core-core repulsion = 20636.046565 eV Total energy + Delta-G solvation = -4100.455427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.46495 -40.98404 -40.38321 -39.58423 -36.58189 -33.98793 -33.91154 -33.62324 -31.85012 -30.17279 -29.61823 -26.78249 -25.45085 -25.18439 -23.97384 -21.61544 -21.51695 -20.64390 -20.15559 -18.31956 -18.27450 -18.20739 -17.18758 -16.96363 -16.53162 -16.04634 -15.97069 -15.36331 -15.29367 -14.93708 -14.84083 -14.14481 -13.90056 -13.78377 -13.59730 -13.25338 -13.07098 -12.88228 -12.61675 -12.56312 -12.14066 -11.97396 -11.27421 -11.19296 -10.91240 -10.74987 -10.51037 -10.46199 -9.93837 -9.62367 -9.45268 -9.41445 -9.15072 -8.73276 -8.44632 -7.46856 -7.16280 -4.88893 0.15946 0.70788 1.57357 2.06784 2.23277 2.43903 2.47846 2.55614 2.85259 3.53314 3.55619 3.65240 3.82937 3.91845 4.00766 4.09982 4.14128 4.37134 4.75773 4.83085 5.04560 5.06406 5.08409 5.21061 5.35913 5.46393 5.51209 5.70766 5.89334 5.91766 6.05942 6.31325 6.59499 6.96299 7.07214 7.35733 7.35779 7.47547 8.00407 8.30201 8.51027 9.91673 10.04901 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.002372 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.477691 B =11803.824903 C =13020.887713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.346 3.654 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.806 5.806 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.271 5.271 14 C 0.054 3.946 15 S 0.013 5.987 16 C -0.158 4.158 17 C 0.453 3.547 18 O -0.418 6.418 19 C -0.098 4.098 20 C -0.051 4.051 21 C -0.245 4.245 22 C 0.558 3.442 23 O -0.508 6.508 24 O -0.513 6.513 25 C 0.099 3.901 26 O -0.133 6.133 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.284 0.716 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.419 0.581 35 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -22.145 0.002 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.103 3.897 4 C -0.531 4.531 5 H 0.102 0.898 6 C -0.159 4.159 7 N -0.430 5.430 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.115 5.115 14 C -0.320 4.320 15 S 0.240 5.760 16 C -0.306 4.306 17 C 0.329 3.671 18 O -0.293 6.293 19 C -0.148 4.148 20 C -0.071 4.071 21 C -0.248 4.248 22 C 0.402 3.598 23 O -0.397 6.397 24 O -0.326 6.326 25 C 0.024 3.976 26 O -0.024 6.024 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.194 0.806 34 H 0.279 0.721 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.166 -21.701 -0.122 22.854 hybrid contribution -1.768 -0.661 0.177 1.896 sum 5.398 -22.362 0.055 23.004 Atomic orbital electron populations 1.21564 0.77638 1.03049 1.02134 1.45810 1.06466 1.04783 1.64150 1.21721 0.85082 0.89079 0.93835 1.19406 0.97469 0.87210 1.49055 0.89850 1.27373 1.08517 0.91270 0.88763 1.70671 1.21604 1.18464 1.32222 0.82694 0.70568 0.72164 0.80414 1.24125 1.18577 1.20696 1.73975 1.15930 1.00887 1.35733 1.74241 1.15384 1.05734 1.16104 1.25616 0.91033 0.93759 1.21587 1.85083 1.06098 0.89360 1.95445 1.23895 1.02369 0.94530 1.09855 1.19173 0.85992 0.89227 0.72678 1.90707 1.24168 1.78260 1.36142 1.21165 0.83424 0.94026 1.16182 1.22132 0.97211 0.93132 0.94629 1.19659 0.94171 0.91458 1.19498 1.19567 0.80073 0.88050 0.72086 1.90943 1.55902 1.46694 1.46140 1.84517 1.25439 1.36647 1.86019 1.25596 0.97340 0.82635 0.92027 1.84112 1.15903 1.34576 1.67835 0.92039 0.91068 0.90198 0.90511 0.85101 0.85127 0.80603 0.72120 0.75057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.89 59.85 0.65 2.42 16 2 N -0.51 -11.68 3.26 -123.18 -0.40 -12.08 16 3 C 0.35 9.09 7.27 -154.81 -1.13 7.96 16 4 C -0.49 -13.00 9.50 -38.31 -0.36 -13.37 16 5 H 0.08 2.14 7.46 -52.49 -0.39 1.75 16 6 C 0.06 1.70 5.52 -17.29 -0.10 1.60 16 7 N -0.81 -21.39 13.65 55.56 0.76 -20.63 16 8 Si 1.11 27.56 25.90 -169.99 -4.40 23.16 16 9 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.26 -6.62 6.76 56.52 0.38 -6.23 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 N -0.42 -11.28 7.52 31.26 0.23 -11.04 16 13 N -0.27 -6.70 11.62 30.89 0.36 -6.34 16 14 C 0.05 1.19 8.09 -87.28 -0.71 0.48 16 15 S 0.01 0.23 20.92 -107.50 -2.25 -2.02 16 16 C -0.16 -2.19 5.42 36.00 0.20 -1.99 16 17 C 0.45 5.61 6.96 -33.07 -0.23 5.38 16 18 O -0.42 -6.03 16.27 5.43 0.09 -5.94 16 19 C -0.10 -1.01 6.82 -38.95 -0.27 -1.27 16 20 C -0.05 -0.50 10.33 -38.93 -0.40 -0.90 16 21 C -0.25 -1.99 6.16 -104.99 -0.65 -2.64 16 22 C 0.56 4.56 8.33 34.45 0.29 4.85 16 23 O -0.51 -5.86 17.72 -19.28 -0.34 -6.20 16 24 O -0.51 -2.36 13.27 -40.63 -0.54 -2.90 16 25 C 0.10 0.59 11.98 30.66 0.37 0.96 16 26 O -0.13 -1.15 10.40 6.12 0.06 -1.09 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 29 H 0.08 1.35 7.48 -51.93 -0.39 0.97 16 30 H 0.28 7.15 8.72 -40.82 -0.36 6.80 16 31 H 0.13 1.79 8.14 -51.91 -0.42 1.36 16 32 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.42 0.19 9.11 45.56 0.42 0.60 16 35 H 0.23 0.39 8.06 -52.48 -0.42 -0.03 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -35.44 339.92 -5.70 -41.14 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: -2.06 Total: -4.65 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.33 Total: 3.49 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.95 Total: -50.10 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.73 Total: -16.14 kcal Atomic # 14 Polarization: 27.56 SS G_CDS: -4.40 Total: 23.16 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.25 Total: -2.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.44 -5.70 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610597998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.691 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds