Wall clock time and date at job start Tue Mar 31 2020 19:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21426 * 120.00049 * 359.97438 * 17 16 15 19 19 C 1.41500 * 120.00205 * 179.97438 * 17 16 15 20 20 C 1.36539 * 125.68561 * 180.02562 * 19 17 16 21 21 C 1.41552 * 106.59172 * 180.02562 * 20 19 17 22 22 C 1.47374 * 126.75700 * 180.02562 * 21 20 19 23 23 O 1.21516 * 120.00468 * 359.97438 * 22 21 20 24 24 O 1.34752 * 119.99645 * 179.97438 * 22 21 20 25 25 C 1.38048 * 106.47985 * 359.97438 * 21 20 19 26 26 O 1.33429 * 108.40965 * 359.74128 * 25 21 20 27 27 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 29 29 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 32 32 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 33 33 H 1.08001 * 126.70484 * 359.97438 * 20 19 17 34 34 H 0.96699 * 117.00010 * 179.97438 * 24 22 21 35 35 H 1.08004 * 125.79646 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1005 -5.5556 -0.0069 19 6 4.3475 -5.9374 0.0031 20 6 4.3133 -7.3024 0.0017 21 6 5.6593 -7.7404 0.0084 22 6 6.1326 -9.1361 0.0090 23 8 5.3312 -10.0495 0.0039 24 8 7.4541 -9.3993 0.0153 25 6 6.4413 -6.6028 0.0130 26 8 5.6368 -5.5383 0.0036 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.5753 4.9451 0.0298 31 1 3.9654 -3.2905 -0.8867 32 1 3.9562 -3.2921 0.8932 33 1 3.4315 -7.9260 -0.0028 34 1 7.7164 -10.3301 0.0159 35 1 7.5211 -6.5784 0.0189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610597998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:41 Heat of formation + Delta-G solvation = -69.052332 kcal Electronic energy + Delta-G solvation = -24737.552524 eV Core-core repulsion = 20636.046565 eV Total energy + Delta-G solvation = -4101.505959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.13866 -42.84970 -40.98244 -40.57026 -37.11517 -35.93322 -35.40591 -34.58832 -32.80300 -31.97826 -30.61655 -28.42051 -27.24969 -25.83117 -24.80482 -23.34674 -22.30337 -22.20478 -21.13324 -20.18868 -19.16460 -18.84262 -18.40117 -17.90982 -17.22357 -17.14491 -16.91669 -16.69595 -16.59749 -16.11463 -16.05574 -15.69992 -15.46843 -14.92456 -14.66266 -14.47050 -14.25865 -14.22029 -13.92121 -13.75869 -13.53035 -13.09452 -12.84852 -12.66605 -12.00159 -11.94763 -11.78398 -11.56512 -11.50132 -11.44698 -11.39702 -10.93108 -10.57734 -10.36668 -10.09490 -9.48440 -8.74441 -6.85944 -0.59990 0.07678 0.15042 0.97602 0.99885 1.39809 1.44948 1.56077 1.60988 1.90726 1.92838 1.95812 2.12971 2.20899 2.42882 2.74044 3.05025 3.31565 3.54549 3.92909 3.96397 3.98330 4.08049 4.33521 4.36466 4.46637 4.54908 4.55974 4.64240 4.69366 4.81008 5.22962 5.37311 5.37529 5.52002 5.67746 6.00645 6.03026 6.39405 6.56684 6.91405 7.92882 8.13878 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.002372 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.477691 B =11803.824903 C =13020.887713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.514 5.514 3 C 0.326 3.674 4 C -0.508 4.508 5 H 0.083 0.917 6 C 0.040 3.960 7 N -0.822 5.822 8 Si 1.146 2.854 9 H -0.299 1.299 10 H -0.274 1.274 11 H -0.293 1.293 12 N -0.444 5.444 13 N -0.304 5.304 14 C 0.072 3.928 15 S 0.041 5.959 16 C -0.156 4.156 17 C 0.466 3.534 18 O -0.447 6.447 19 C -0.119 4.119 20 C -0.045 4.045 21 C -0.269 4.269 22 C 0.567 3.433 23 O -0.551 6.551 24 O -0.498 6.498 25 C 0.142 3.858 26 O -0.139 6.139 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.286 0.714 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.439 0.561 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -24.159 -0.034 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.214 5.214 3 C 0.079 3.921 4 C -0.549 4.549 5 H 0.101 0.899 6 C -0.180 4.180 7 N -0.447 5.447 8 Si 0.975 3.025 9 H -0.228 1.228 10 H -0.201 1.201 11 H -0.220 1.220 12 N -0.293 5.293 13 N -0.146 5.146 14 C -0.303 4.303 15 S 0.268 5.732 16 C -0.305 4.305 17 C 0.345 3.655 18 O -0.325 6.325 19 C -0.169 4.169 20 C -0.065 4.065 21 C -0.272 4.272 22 C 0.413 3.587 23 O -0.443 6.443 24 O -0.312 6.312 25 C 0.068 3.932 26 O -0.031 6.031 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.188 0.812 34 H 0.302 0.698 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 8.394 -23.706 -0.157 25.149 hybrid contribution -2.076 -0.376 0.192 2.119 sum 6.318 -24.082 0.035 24.897 Atomic orbital electron populations 1.21915 0.74731 1.04610 1.03802 1.46173 1.08377 1.04154 1.62706 1.21791 0.85705 0.89857 0.94721 1.19402 0.97430 0.87613 1.50434 0.89942 1.27833 1.09878 0.91462 0.88808 1.70668 1.21855 1.18495 1.33719 0.82207 0.69434 0.71844 0.79035 1.22776 1.20085 1.21995 1.73862 1.16892 1.02225 1.36337 1.74174 1.16773 1.04883 1.18790 1.26590 0.90462 0.96080 1.17182 1.85116 1.08043 0.85394 1.94672 1.24050 1.00557 0.95472 1.10458 1.18954 0.86395 0.88367 0.71793 1.90701 1.25234 1.78348 1.38176 1.20605 0.83639 0.93615 1.19041 1.22222 0.98172 0.92943 0.93174 1.19739 0.93804 0.92368 1.21246 1.19517 0.80692 0.87524 0.70984 1.90935 1.57177 1.47810 1.48410 1.84465 1.23142 1.38564 1.85070 1.26528 0.98587 0.80982 0.87145 1.84132 1.15396 1.35476 1.68088 0.90270 0.88413 0.89778 0.90309 0.84619 0.84629 0.81153 0.69839 0.70360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 10.89 127.77 1.39 4.45 16 2 N -0.51 -23.01 3.26 -543.63 -1.77 -24.78 16 3 C 0.33 17.17 7.27 133.23 0.97 18.14 16 4 C -0.51 -27.18 9.50 23.09 0.22 -26.96 16 5 H 0.08 4.29 7.46 -2.91 -0.02 4.27 16 6 C 0.04 2.16 5.52 85.29 0.47 2.63 16 7 N -0.82 -43.93 13.65 21.86 0.30 -43.63 16 8 Si 1.15 56.89 25.90 68.60 1.78 58.67 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 10 H -0.27 -14.11 6.76 99.48 0.67 -13.43 16 11 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 12 N -0.44 -24.24 7.52 -55.02 -0.41 -24.66 16 13 N -0.30 -14.89 11.62 -56.17 -0.65 -15.54 16 14 C 0.07 3.09 8.09 179.18 1.45 4.54 16 15 S 0.04 1.33 20.92 -56.49 -1.18 0.15 16 16 C -0.16 -4.11 5.42 71.24 0.39 -3.73 16 17 C 0.47 10.99 6.96 26.49 0.18 11.18 16 18 O -0.45 -12.55 16.27 -3.48 -0.06 -12.61 16 19 C -0.12 -2.27 6.82 22.68 0.15 -2.11 16 20 C -0.05 -0.82 10.33 22.69 0.23 -0.58 16 21 C -0.27 -3.70 6.16 -20.10 -0.12 -3.82 16 22 C 0.57 8.03 8.33 70.23 0.59 8.61 16 23 O -0.55 -12.23 17.72 19.78 0.35 -11.88 16 24 O -0.50 -2.90 13.27 -56.63 -0.75 -3.65 16 25 C 0.14 1.15 11.98 67.77 0.81 1.96 16 26 O -0.14 -2.03 10.40 -1.03 -0.01 -2.04 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.10 2.72 7.85 -2.39 -0.02 2.70 16 29 H 0.08 2.74 7.48 -2.39 -0.02 2.72 16 30 H 0.29 14.56 8.72 -92.71 -0.81 13.75 16 31 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.14 3.49 8.14 -2.40 -0.02 3.47 16 33 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.44 -0.97 9.11 -74.06 -0.67 -1.65 16 35 H 0.28 -0.70 8.06 -2.91 -0.02 -0.72 16 Total: -1.00 -77.71 339.92 4.76 -72.96 By element: Atomic # 1 Polarization: -7.73 SS G_CDS: 0.44 Total: -7.29 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.73 Total: 14.31 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -2.54 Total: -108.61 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.47 Total: -30.17 kcal Atomic # 14 Polarization: 56.89 SS G_CDS: 1.78 Total: 58.67 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.18 Total: 0.15 kcal Total: -77.71 4.76 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610597998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.904 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds