Wall clock time and date at job start Tue Mar 31 2020 19:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99983 * 2 1 4 4 C 1.50690 * 109.47142 * 270.00504 * 3 2 1 5 5 H 1.08000 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00134 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99318 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00439 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47064 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47595 * 119.99511 * 8 6 4 11 11 H 1.48505 * 109.46938 * 239.99986 * 8 6 4 12 12 C 1.34781 * 119.99959 * 180.02562 * 2 1 3 13 13 O 1.21273 * 119.99958 * 174.49311 * 12 2 1 14 14 C 1.50704 * 119.99803 * 354.21166 * 12 2 1 15 15 C 1.50698 * 115.54844 * 90.41524 * 14 12 2 16 16 C 1.38237 * 119.99347 * 209.60434 * 15 14 12 17 17 C 1.38240 * 119.99636 * 179.80795 * 16 15 14 18 18 C 1.38238 * 119.99964 * 0.41902 * 17 16 15 19 19 C 1.38240 * 120.00015 * 359.80750 * 18 17 16 20 20 C 1.38230 * 120.00449 * 29.86974 * 15 14 12 21 21 C 1.53000 * 117.49754 * 304.74133 * 14 12 2 22 22 C 1.53000 * 60.00035 * 252.51485 * 21 14 12 23 23 H 1.08995 * 117.50441 * 107.49664 * 22 21 14 24 24 Br 1.96601 * 117.49783 * 252.51566 * 22 21 14 25 25 H 1.09006 * 109.46754 * 274.79455 * 1 2 3 26 26 H 1.08994 * 109.47120 * 34.79468 * 1 2 3 27 27 H 1.09000 * 109.46916 * 154.80139 * 1 2 3 28 28 H 1.08998 * 109.46851 * 30.01042 * 3 2 1 29 29 H 1.09002 * 109.46747 * 150.00399 * 3 2 1 30 30 H 0.97003 * 119.99531 * 180.02562 * 7 6 4 31 31 H 1.07995 * 120.00319 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.00299 * 180.20500 * 17 16 15 33 33 H 1.07995 * 120.00312 * 179.78746 * 18 17 16 34 34 H 1.07999 * 120.00335 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99916 * 359.97438 * 20 15 14 36 36 H 1.08995 * 117.50244 * 0.02562 * 21 14 12 37 37 H 1.08996 * 117.49755 * 145.02381 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4337 9 1 2.8595 2.4174 -4.3672 10 1 2.8004 4.7383 -3.6664 11 1 4.9000 3.5249 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3475 -1.1696 -0.1013 14 6 1.3911 -2.4691 0.1305 15 6 0.9584 -3.1034 -1.1661 16 6 -0.1809 -3.8852 -1.2066 17 6 -0.5801 -4.4639 -2.3969 18 6 0.1647 -4.2678 -3.5448 19 6 1.3067 -3.4898 -3.5033 20 6 1.7037 -2.9080 -2.3138 21 6 0.4699 -2.6359 1.3407 22 6 1.7925 -3.4022 1.2747 23 1 2.5975 -3.0746 1.9326 24 35 1.7046 -5.3376 0.9408 25 1 -0.3633 0.0859 1.0241 26 1 -0.3633 0.8439 -0.5864 27 1 -0.3633 -0.9299 -0.4375 28 1 1.6085 2.0283 0.5140 29 1 3.1500 1.1383 0.5138 30 1 4.0310 4.4435 -0.8502 31 1 -0.7606 -4.0418 -0.3089 32 1 -1.4721 -5.0720 -2.4293 33 1 -0.1452 -4.7226 -4.4739 34 1 1.8889 -3.3369 -4.3999 35 1 2.5959 -2.3003 -2.2813 36 1 0.4044 -1.8039 2.0418 37 1 -0.4489 -3.2048 1.1991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626879173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:52 Heat of formation + Delta-G solvation = 26.647155 kcal Electronic energy + Delta-G solvation = -21368.786537 eV Core-core repulsion = 18158.499370 eV Total energy + Delta-G solvation = -3210.287167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43144 -38.44848 -36.43980 -34.89895 -32.58217 -30.94080 -30.65822 -29.90056 -27.95792 -26.10238 -24.57025 -22.94416 -22.68937 -21.74989 -20.79561 -18.47898 -17.17354 -16.50622 -16.28008 -15.54343 -15.17951 -14.79145 -14.53561 -14.33081 -14.04054 -13.49121 -13.30050 -12.91255 -12.52240 -12.27721 -12.17109 -11.99713 -11.71827 -11.61767 -11.41034 -11.22684 -11.03041 -10.90939 -10.72676 -10.58550 -10.18437 -9.90255 -9.72572 -9.64549 -9.03234 -8.75851 -8.53821 -8.46547 -7.73119 -6.07509 -4.11830 1.32349 1.51098 1.55048 3.17529 3.24134 3.28388 3.36296 3.40856 3.78598 3.96195 4.35758 4.42482 4.54394 4.74487 4.83086 5.05298 5.09202 5.25892 5.28263 5.33605 5.52890 5.59195 5.68115 5.71216 5.75588 5.90056 6.04538 6.15797 6.21994 6.52708 6.63241 6.69635 6.97787 7.08046 7.34795 7.45998 7.88669 8.18697 8.30074 8.82949 8.98465 9.53344 11.00779 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.004278 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.072076 B = 6543.193214 C = 7387.406097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.591 5.591 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.542 3.458 13 O -0.527 6.527 14 C -0.087 4.087 15 C -0.043 4.043 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.091 4.091 21 C -0.143 4.143 22 C -0.087 4.087 23 H 0.144 0.856 24 Br -0.110 7.110 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 -17.828 2.549 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.326 3.674 13 O -0.404 6.404 14 C -0.091 4.091 15 C -0.044 4.044 16 C -0.120 4.120 17 C -0.141 4.141 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.109 4.109 21 C -0.181 4.181 22 C -0.183 4.183 23 H 0.162 0.838 24 Br -0.028 7.028 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.849 -18.288 2.437 20.914 hybrid contribution 0.240 0.838 -0.900 1.253 sum -9.610 -17.449 1.537 19.980 Atomic orbital electron populations 1.21705 0.81186 1.02651 1.00639 1.48084 1.06370 1.07247 1.70471 1.19345 0.92382 0.77811 0.97779 1.21435 1.36381 1.06252 0.92206 0.92336 1.24927 0.95329 0.96369 0.97437 1.69939 1.38451 1.14364 1.30673 0.86452 0.78107 0.78342 0.84612 1.19757 1.20945 1.20847 1.18948 0.87119 0.83208 0.78112 1.90707 1.13753 1.86495 1.49405 1.20505 1.02728 0.96063 0.89841 1.18553 0.95706 0.98124 0.91968 1.20920 0.95943 0.97058 0.98099 1.20977 0.99965 1.00533 0.92651 1.21130 0.95451 0.98853 0.98206 1.21120 0.97051 0.97675 0.97777 1.21175 0.99519 0.98315 0.91929 1.23648 0.93471 1.01937 0.99035 1.25687 1.03248 0.85773 1.03633 0.83793 1.97313 1.99039 1.09680 1.96798 0.93596 0.90865 0.91982 0.94723 0.93922 0.92750 0.86051 0.86197 0.86326 0.85991 0.85269 0.86332 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 9.26 59.85 0.55 1.85 16 2 N -0.59 -12.18 2.86 -182.95 -0.52 -12.70 16 3 C 0.25 6.28 5.14 -5.20 -0.03 6.25 16 4 C -0.52 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.54 11.02 5.76 -10.98 -0.06 10.95 16 13 O -0.53 -13.06 16.38 5.56 0.09 -12.97 16 14 C -0.09 -1.32 1.25 -156.81 -0.20 -1.52 16 15 C -0.04 -0.63 4.19 -104.63 -0.44 -1.07 16 16 C -0.10 -1.24 7.96 -39.58 -0.32 -1.55 16 17 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 18 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 19 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 20 C -0.09 -1.49 9.32 -39.59 -0.37 -1.86 16 21 C -0.14 -1.63 7.87 -26.73 -0.21 -1.84 16 22 C -0.09 -1.16 6.67 -26.73 -0.18 -1.34 16 23 H 0.14 1.98 8.14 -51.93 -0.42 1.55 16 24 Br -0.11 -1.36 31.98 -68.01 -2.17 -3.54 16 25 H 0.05 0.60 7.79 -51.93 -0.40 0.19 16 26 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 27 H 0.06 0.86 6.02 -51.93 -0.31 0.55 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.12 1.23 5.95 -52.49 -0.31 0.92 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.48 7.07 -52.48 -0.37 2.10 16 36 H 0.12 1.26 7.62 -51.93 -0.40 0.87 16 37 H 0.12 1.07 6.11 -51.93 -0.32 0.75 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.12 330.44 -9.35 -41.47 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.58 Total: 0.64 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.86 Total: -9.06 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.21 Total: -38.28 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 35 Polarization: -1.36 SS G_CDS: -2.17 Total: -3.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.12 -9.35 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626879173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.118 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds