Wall clock time and date at job start Tue Mar 31 2020 19:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99983 * 2 1 4 4 C 1.50690 * 109.47142 * 270.00504 * 3 2 1 5 5 H 1.08000 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00134 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99318 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00439 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47064 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47595 * 119.99511 * 8 6 4 11 11 H 1.48505 * 109.46938 * 239.99986 * 8 6 4 12 12 C 1.34781 * 119.99959 * 180.02562 * 2 1 3 13 13 O 1.21273 * 119.99958 * 174.49311 * 12 2 1 14 14 C 1.50704 * 119.99803 * 354.21166 * 12 2 1 15 15 C 1.50698 * 115.54844 * 90.41524 * 14 12 2 16 16 C 1.38237 * 119.99347 * 209.60434 * 15 14 12 17 17 C 1.38240 * 119.99636 * 179.80795 * 16 15 14 18 18 C 1.38238 * 119.99964 * 0.41902 * 17 16 15 19 19 C 1.38240 * 120.00015 * 359.80750 * 18 17 16 20 20 C 1.38230 * 120.00449 * 29.86974 * 15 14 12 21 21 C 1.53000 * 117.49754 * 304.74133 * 14 12 2 22 22 C 1.53000 * 60.00035 * 252.51485 * 21 14 12 23 23 H 1.08995 * 117.50441 * 107.49664 * 22 21 14 24 24 Br 1.96601 * 117.49783 * 252.51566 * 22 21 14 25 25 H 1.09006 * 109.46754 * 274.79455 * 1 2 3 26 26 H 1.08994 * 109.47120 * 34.79468 * 1 2 3 27 27 H 1.09000 * 109.46916 * 154.80139 * 1 2 3 28 28 H 1.08998 * 109.46851 * 30.01042 * 3 2 1 29 29 H 1.09002 * 109.46747 * 150.00399 * 3 2 1 30 30 H 0.97003 * 119.99531 * 180.02562 * 7 6 4 31 31 H 1.07995 * 120.00319 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.00299 * 180.20500 * 17 16 15 33 33 H 1.07995 * 120.00312 * 179.78746 * 18 17 16 34 34 H 1.07999 * 120.00335 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99916 * 359.97438 * 20 15 14 36 36 H 1.08995 * 117.50244 * 0.02562 * 21 14 12 37 37 H 1.08996 * 117.49755 * 145.02381 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4337 9 1 2.8595 2.4174 -4.3672 10 1 2.8004 4.7383 -3.6664 11 1 4.9000 3.5249 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3475 -1.1696 -0.1013 14 6 1.3911 -2.4691 0.1305 15 6 0.9584 -3.1034 -1.1661 16 6 -0.1809 -3.8852 -1.2066 17 6 -0.5801 -4.4639 -2.3969 18 6 0.1647 -4.2678 -3.5448 19 6 1.3067 -3.4898 -3.5033 20 6 1.7037 -2.9080 -2.3138 21 6 0.4699 -2.6359 1.3407 22 6 1.7925 -3.4022 1.2747 23 1 2.5975 -3.0746 1.9326 24 35 1.7046 -5.3376 0.9408 25 1 -0.3633 0.0859 1.0241 26 1 -0.3633 0.8439 -0.5864 27 1 -0.3633 -0.9299 -0.4375 28 1 1.6085 2.0283 0.5140 29 1 3.1500 1.1383 0.5138 30 1 4.0310 4.4435 -0.8502 31 1 -0.7606 -4.0418 -0.3089 32 1 -1.4721 -5.0720 -2.4293 33 1 -0.1452 -4.7226 -4.4739 34 1 1.8889 -3.3369 -4.3999 35 1 2.5959 -2.3003 -2.2813 36 1 0.4044 -1.8039 2.0418 37 1 -0.4489 -3.2048 1.1991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626879173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:52 Heat of formation + Delta-G solvation = 8.016404 kcal Electronic energy + Delta-G solvation = -21369.594427 eV Core-core repulsion = 18158.499370 eV Total energy + Delta-G solvation = -3211.095057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70879 -39.73093 -37.64756 -36.66713 -34.68947 -31.95877 -31.65224 -30.94976 -29.88591 -27.55409 -26.14290 -24.49248 -23.70836 -22.79022 -22.14606 -19.83705 -18.78213 -18.27722 -17.57098 -17.24148 -16.47328 -16.27453 -15.81199 -15.60238 -15.38782 -14.87053 -14.42630 -14.21515 -13.92772 -13.86689 -13.61492 -13.49376 -13.20086 -12.87133 -12.81701 -12.61891 -12.59424 -12.35106 -12.24289 -12.05490 -11.72957 -11.70446 -10.99331 -10.76941 -10.67014 -10.54445 -9.76621 -9.55957 -9.49098 -8.25691 -6.39404 0.32065 0.48346 0.52447 1.32957 1.35440 1.46875 1.64196 2.07723 2.34146 2.44889 2.92464 3.04234 3.26157 3.48739 3.55245 3.70521 4.09095 4.13783 4.27853 4.30766 4.39958 4.59654 4.61234 4.69044 4.75591 4.80272 4.94218 4.98662 5.07525 5.15703 5.17431 5.52168 5.57251 5.63567 5.66682 5.78950 6.02695 6.11123 6.63889 6.71109 7.22608 7.37932 8.81625 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.004278 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.072076 B = 6543.193214 C = 7387.406097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.260 3.740 4 C -0.539 4.539 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.538 3.462 13 O -0.589 6.589 14 C -0.103 4.103 15 C -0.050 4.050 16 C -0.098 4.098 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.106 4.106 22 C -0.095 4.095 23 H 0.132 0.868 24 Br -0.095 7.095 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.031 0.969 29 H -0.001 1.001 30 H 0.268 0.732 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -19.798 2.090 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.327 5.327 3 C 0.139 3.861 4 C -0.578 4.578 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.207 1.207 12 C 0.325 3.675 13 O -0.469 6.469 14 C -0.108 4.108 15 C -0.051 4.051 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.192 4.192 23 H 0.150 0.850 24 Br -0.013 7.013 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.334 -20.270 1.987 24.344 hybrid contribution 1.324 1.389 -0.755 2.062 sum -12.010 -18.881 1.233 22.410 Atomic orbital electron populations 1.21976 0.77841 1.03546 1.02999 1.48064 1.08407 1.05860 1.70340 1.18809 0.91078 0.80122 0.96076 1.21654 1.36753 1.06415 0.92973 0.93489 1.25787 0.94893 0.96401 1.01754 1.70040 1.38946 1.14834 1.32781 0.85434 0.77934 0.78469 0.79407 1.19524 1.19079 1.20706 1.19802 0.86707 0.84760 0.76196 1.90655 1.16783 1.87642 1.51852 1.20206 1.05039 0.93715 0.91820 1.18551 0.96686 0.99123 0.90742 1.21189 0.94658 0.95943 0.99778 1.21463 1.00511 0.99438 0.91640 1.21484 0.94125 0.97637 1.00003 1.21257 0.98340 0.98207 0.96960 1.20997 0.99232 1.00188 0.94354 1.23903 0.93478 1.01410 0.95567 1.25707 1.04639 0.86562 1.02249 0.85037 1.97307 1.98999 1.08213 1.96824 0.90026 0.91784 0.89609 0.95078 0.98312 0.92337 0.83251 0.82335 0.83284 0.85712 0.90143 0.85172 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 9.26 127.77 1.18 3.55 16 2 N -0.60 -25.46 2.86 -851.13 -2.43 -27.89 16 3 C 0.26 14.06 5.14 85.63 0.44 14.50 16 4 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.63 5.46 84.66 0.46 1.09 16 7 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 8 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 C 0.54 22.99 5.76 87.66 0.50 23.49 16 13 O -0.59 -31.73 16.38 -3.01 -0.05 -31.78 16 14 C -0.10 -3.10 1.25 -53.67 -0.07 -3.17 16 15 C -0.05 -1.44 4.19 -19.87 -0.08 -1.53 16 16 C -0.10 -2.00 7.96 22.27 0.18 -1.82 16 17 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 18 C -0.11 -2.32 10.05 22.27 0.22 -2.10 16 19 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 20 C -0.13 -4.41 9.32 22.27 0.21 -4.20 16 21 C -0.11 -2.08 7.87 30.59 0.24 -1.84 16 22 C -0.09 -2.44 6.67 30.59 0.20 -2.23 16 23 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 24 Br -0.10 -2.17 31.98 -20.37 -0.65 -2.82 16 25 H 0.08 1.89 7.79 -2.38 -0.02 1.87 16 26 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.09 2.18 6.02 -2.39 -0.01 2.17 16 28 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 29 H 0.00 -0.08 7.50 -2.39 -0.02 -0.09 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.15 2.16 5.95 -2.91 -0.02 2.15 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.08 3.46 7.07 -2.91 -0.02 3.44 16 36 H 0.13 2.32 7.62 -2.39 -0.02 2.30 16 37 H 0.15 1.92 6.11 -2.39 -0.01 1.90 16 Total: -1.00 -76.25 330.44 4.44 -71.82 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.08 Total: 9.52 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.18 Total: -10.71 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.15 Total: -83.73 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 35 Polarization: -2.17 SS G_CDS: -0.65 Total: -2.82 kcal Total: -76.25 4.44 -71.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626879173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.834 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds