Wall clock time and date at job start Tue Mar 31 2020 20:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 294.53197 * 3 2 1 5 5 C 1.36933 * 120.00464 * 262.85001 * 4 3 2 6 6 H 1.07998 * 120.00175 * 212.31970 * 5 4 3 7 7 C 1.38813 * 119.99616 * 32.32755 * 5 4 3 8 8 N 1.31614 * 120.00315 * 6.01117 * 7 5 4 9 9 Si 1.86807 * 119.99942 * 186.01971 * 7 5 4 10 10 H 1.48504 * 109.47104 * 89.99363 * 9 7 5 11 11 H 1.48499 * 109.47036 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.46817 * 329.99825 * 9 7 5 13 13 C 1.46505 * 119.99554 * 82.85305 * 4 3 2 14 14 C 1.50703 * 109.46770 * 89.99899 * 13 4 3 15 15 O 1.21278 * 120.00288 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99313 * 179.97438 * 14 13 4 17 17 C 1.39928 * 119.99154 * 184.62466 * 16 14 13 18 18 C 1.38870 * 120.06699 * 34.78891 * 17 16 14 19 19 C 1.38200 * 119.91641 * 179.97438 * 18 17 16 20 20 Cl 1.73602 * 119.97965 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.04507 * 359.71996 * 19 18 17 22 22 C 1.38241 * 120.12698 * 0.55193 * 21 19 18 23 23 C 1.38138 * 120.08085 * 359.45088 * 22 21 19 24 24 N 1.48025 * 120.02164 * 180.25478 * 23 22 21 25 25 O 1.21798 * 120.00056 * 355.29042 * 24 23 22 26 26 O 1.21806 * 120.00038 * 175.29823 * 24 23 22 27 27 H 4.40642 * 5.51395 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46360 * 174.53597 * 3 2 1 29 29 H 1.08993 * 109.47453 * 54.54081 * 3 2 1 30 30 H 0.96998 * 120.00309 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46876 * 330.00215 * 13 4 3 32 32 H 1.08999 * 109.46924 * 209.99882 * 13 4 3 33 33 H 0.96996 * 120.00293 * 4.62940 * 16 14 13 34 34 H 1.07998 * 120.03987 * 359.94489 * 18 17 16 35 35 H 1.08003 * 119.94039 * 180.29883 * 21 19 18 36 36 H 1.08000 * 119.96037 * 179.72285 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5726 1.2565 5 6 3.5017 0.2503 2.2876 6 1 4.2963 -0.0443 2.9571 7 6 2.8523 1.4632 2.4724 8 7 1.8079 1.7699 1.7327 9 14 3.4610 2.6602 3.7710 10 1 4.4665 3.5732 3.1702 11 1 2.3173 3.4543 4.2872 12 1 4.0833 1.9047 4.8877 13 6 3.2306 -2.0264 1.4099 14 6 4.5927 -2.4900 0.9615 15 8 5.4035 -1.6852 0.5544 16 7 4.9100 -3.7989 1.0139 17 6 6.2051 -4.2181 0.6898 18 6 7.2952 -3.4190 1.0082 19 6 8.5730 -3.8363 0.6872 20 17 9.9369 -2.8383 1.0839 21 6 8.7664 -5.0521 0.0543 22 6 7.6821 -5.8466 -0.2686 23 6 6.4027 -5.4345 0.0498 24 7 5.2430 -6.2889 -0.2915 25 8 5.4081 -7.3137 -0.9286 26 8 4.1236 -5.9669 0.0647 27 1 -1.0499 0.0001 0.0002 28 1 3.0088 1.0239 -0.0979 29 1 3.0097 -0.5953 -0.8370 30 1 1.3543 2.6176 1.8615 31 1 2.4647 -2.5073 0.8014 32 1 3.0829 -2.2919 2.4567 33 1 4.2407 -4.4501 1.2761 34 1 7.1446 -2.4723 1.5057 35 1 9.7661 -5.3789 -0.1915 36 1 7.8359 -6.7926 -0.7664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645395643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:49 Heat of formation + Delta-G solvation = 79.897600 kcal Electronic energy + Delta-G solvation = -26155.032325 eV Core-core repulsion = 22057.941613 eV Total energy + Delta-G solvation = -4097.090712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45572 -40.53207 -38.87408 -37.03761 -36.81320 -35.85331 -34.65947 -32.01336 -31.63725 -31.51139 -30.43506 -27.50604 -26.44466 -25.94287 -23.89307 -22.85621 -22.00635 -20.28134 -19.41761 -18.87785 -18.08524 -17.71775 -17.50812 -17.04298 -16.41259 -15.95816 -15.73765 -15.07275 -14.93537 -14.40616 -14.06459 -13.84811 -13.54750 -13.46700 -13.29886 -12.65185 -12.56583 -12.23710 -11.71929 -11.57151 -11.46524 -11.42935 -11.33210 -11.30674 -11.02649 -10.88000 -10.63548 -10.38169 -10.18580 -9.81311 -9.54898 -9.03110 -8.81358 -8.70640 -8.46112 -7.00536 -5.87265 -3.48911 -0.44914 0.57598 1.03971 1.15531 1.55223 2.65647 2.85060 3.11083 3.31620 3.38120 3.38839 3.95835 4.11427 4.32135 4.35739 4.41540 4.45973 4.50717 4.95377 5.15551 5.24577 5.34582 5.43225 5.52373 5.55876 5.77076 5.82032 5.97449 6.13474 6.19267 6.35946 6.68325 7.14045 7.32976 7.39080 7.49330 7.67346 8.18615 8.36898 8.98346 9.18018 9.58450 10.08258 11.13848 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.003749 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.554293 B = 7466.773425 C = 9441.209001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.094 4.094 3 C 0.272 3.728 4 N -0.555 5.555 5 C -0.273 4.273 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.884 5.884 9 Si 0.909 3.091 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.134 3.866 14 C 0.479 3.521 15 O -0.493 6.493 16 N -0.676 5.676 17 C 0.255 3.745 18 C -0.125 4.125 19 C 0.035 3.965 20 Cl -0.038 7.038 21 C -0.141 4.141 22 C -0.023 4.023 23 C -0.090 4.090 24 N 0.043 4.957 25 O -0.158 6.158 26 O -0.173 6.173 27 H 0.190 0.810 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.426 0.574 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -14.885 -2.425 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.097 4.097 3 C 0.147 3.853 4 N -0.272 5.272 5 C -0.402 4.402 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.001 3.999 14 C 0.265 3.735 15 O -0.364 6.364 16 N -0.330 5.330 17 C 0.152 3.848 18 C -0.147 4.147 19 C 0.007 3.993 20 Cl -0.008 7.008 21 C -0.162 4.162 22 C -0.043 4.043 23 C -0.178 4.178 24 N 0.558 4.442 25 O -0.375 6.375 26 O -0.382 6.382 27 H 0.208 0.792 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.008 -13.469 -2.445 18.884 hybrid contribution -0.411 0.316 0.776 0.933 sum 12.597 -13.152 -1.669 18.288 Atomic orbital electron populations 1.24129 0.95260 1.06545 1.05515 1.23990 0.95039 0.95175 0.95479 1.17638 0.82894 0.98969 0.85752 1.43515 1.73101 0.98051 1.12532 1.19051 1.13768 1.00260 1.07169 0.91379 1.25263 0.95402 0.99484 0.98184 1.69956 1.19315 1.22963 1.40249 0.86210 0.77720 0.80975 0.81269 1.21193 1.21542 1.20337 1.20749 0.89507 0.88107 1.01497 1.24284 0.93760 0.79393 0.76035 1.90670 1.51121 1.52617 1.41976 1.45085 1.09375 1.11727 1.66810 1.17508 0.87855 0.89633 0.89774 1.21223 0.88347 1.02567 1.02560 1.21139 0.89377 0.92335 0.96476 1.98428 1.42055 1.68409 1.91930 1.20951 0.99984 0.93141 1.02113 1.20766 0.88408 1.00422 0.94679 1.21027 0.87195 0.96018 1.13570 1.43355 1.01923 1.00476 0.98406 1.94527 1.91808 1.13454 1.37671 1.94397 1.10022 1.76679 1.57082 0.79239 0.89038 0.94764 0.93166 0.90189 0.88957 0.73055 0.81251 0.82700 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.56 19.22 29.55 0.57 -5.99 16 2 C -0.09 -2.24 11.17 -37.12 -0.41 -2.65 16 3 C 0.27 6.42 5.41 -6.83 -0.04 6.38 16 4 N -0.56 -13.06 1.95 -177.95 -0.35 -13.41 16 5 C -0.27 -7.08 9.56 -15.06 -0.14 -7.22 16 6 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 7 C 0.02 0.46 5.15 -17.43 -0.09 0.38 16 8 N -0.88 -24.31 9.30 55.49 0.52 -23.79 16 9 Si 0.91 21.08 29.56 -169.99 -5.02 16.06 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 14 C 0.48 8.36 7.64 -10.98 -0.08 8.27 16 15 O -0.49 -10.20 14.19 5.56 0.08 -10.13 16 16 N -0.68 -9.52 4.70 -9.86 -0.05 -9.57 16 17 C 0.25 3.38 6.24 -83.70 -0.52 2.86 16 18 C -0.13 -1.63 8.44 -39.36 -0.33 -1.96 16 19 C 0.03 0.37 6.32 -39.53 -0.25 0.12 16 20 Cl -0.04 -0.38 28.95 -51.86 -1.50 -1.88 16 21 C -0.14 -1.15 9.83 -39.51 -0.39 -1.54 16 22 C -0.02 -0.21 9.55 -39.62 -0.38 -0.58 16 23 C -0.09 -1.08 6.86 -79.75 -0.55 -1.62 16 24 N 0.04 0.57 4.45 34.06 0.15 0.72 16 25 O -0.16 -2.10 18.46 -29.46 -0.54 -2.64 16 26 O -0.17 -2.42 15.94 -29.46 -0.47 -2.89 16 27 H 0.19 3.53 7.80 -54.10 -0.42 3.11 16 28 H 0.09 2.38 6.99 -51.93 -0.36 2.01 16 29 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16 33 H 0.43 5.26 6.25 -40.82 -0.26 5.00 16 34 H 0.17 2.54 6.50 -52.49 -0.34 2.20 16 35 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.16 1.06 7.62 -52.49 -0.40 0.66 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -30.58 343.95 -7.66 -38.24 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.01 Total: 5.20 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.65 Total: -1.10 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.27 Total: -46.05 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.93 Total: -15.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.58 -7.66 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645395643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.136 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds