Wall clock time and date at job start Tue Mar 31 2020 20:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 294.53197 * 3 2 1 5 5 C 1.36933 * 120.00464 * 262.85001 * 4 3 2 6 6 H 1.07998 * 120.00175 * 212.31970 * 5 4 3 7 7 C 1.38813 * 119.99616 * 32.32755 * 5 4 3 8 8 N 1.31614 * 120.00315 * 6.01117 * 7 5 4 9 9 Si 1.86807 * 119.99942 * 186.01971 * 7 5 4 10 10 H 1.48504 * 109.47104 * 89.99363 * 9 7 5 11 11 H 1.48499 * 109.47036 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.46817 * 329.99825 * 9 7 5 13 13 C 1.46505 * 119.99554 * 82.85305 * 4 3 2 14 14 C 1.50703 * 109.46770 * 89.99899 * 13 4 3 15 15 O 1.21278 * 120.00288 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99313 * 179.97438 * 14 13 4 17 17 C 1.39928 * 119.99154 * 184.62466 * 16 14 13 18 18 C 1.38870 * 120.06699 * 34.78891 * 17 16 14 19 19 C 1.38200 * 119.91641 * 179.97438 * 18 17 16 20 20 Cl 1.73602 * 119.97965 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.04507 * 359.71996 * 19 18 17 22 22 C 1.38241 * 120.12698 * 0.55193 * 21 19 18 23 23 C 1.38138 * 120.08085 * 359.45088 * 22 21 19 24 24 N 1.48025 * 120.02164 * 180.25478 * 23 22 21 25 25 O 1.21798 * 120.00056 * 355.29042 * 24 23 22 26 26 O 1.21806 * 120.00038 * 175.29823 * 24 23 22 27 27 H 4.40642 * 5.51395 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46360 * 174.53597 * 3 2 1 29 29 H 1.08993 * 109.47453 * 54.54081 * 3 2 1 30 30 H 0.96998 * 120.00309 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46876 * 330.00215 * 13 4 3 32 32 H 1.08999 * 109.46924 * 209.99882 * 13 4 3 33 33 H 0.96996 * 120.00293 * 4.62940 * 16 14 13 34 34 H 1.07998 * 120.03987 * 359.94489 * 18 17 16 35 35 H 1.08003 * 119.94039 * 180.29883 * 21 19 18 36 36 H 1.08000 * 119.96037 * 179.72285 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5726 1.2565 5 6 3.5017 0.2503 2.2876 6 1 4.2963 -0.0443 2.9571 7 6 2.8523 1.4632 2.4724 8 7 1.8079 1.7699 1.7327 9 14 3.4610 2.6602 3.7710 10 1 4.4665 3.5732 3.1702 11 1 2.3173 3.4543 4.2872 12 1 4.0833 1.9047 4.8877 13 6 3.2306 -2.0264 1.4099 14 6 4.5927 -2.4900 0.9615 15 8 5.4035 -1.6852 0.5544 16 7 4.9100 -3.7989 1.0139 17 6 6.2051 -4.2181 0.6898 18 6 7.2952 -3.4190 1.0082 19 6 8.5730 -3.8363 0.6872 20 17 9.9369 -2.8383 1.0839 21 6 8.7664 -5.0521 0.0543 22 6 7.6821 -5.8466 -0.2686 23 6 6.4027 -5.4345 0.0498 24 7 5.2430 -6.2889 -0.2915 25 8 5.4081 -7.3137 -0.9286 26 8 4.1236 -5.9669 0.0647 27 1 -1.0499 0.0001 0.0002 28 1 3.0088 1.0239 -0.0979 29 1 3.0097 -0.5953 -0.8370 30 1 1.3543 2.6176 1.8615 31 1 2.4647 -2.5073 0.8014 32 1 3.0829 -2.2919 2.4567 33 1 4.2407 -4.4501 1.2761 34 1 7.1446 -2.4723 1.5057 35 1 9.7661 -5.3789 -0.1915 36 1 7.8359 -6.7926 -0.7664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645395643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:48 Heat of formation + Delta-G solvation = 63.773806 kcal Electronic energy + Delta-G solvation = -26155.731505 eV Core-core repulsion = 22057.941613 eV Total energy + Delta-G solvation = -4097.789892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.46228 -41.66961 -40.01099 -38.02184 -37.79376 -37.52014 -35.85551 -33.54532 -33.19712 -32.92193 -31.56773 -29.01724 -27.89510 -27.41447 -25.05568 -23.96196 -23.43225 -21.61681 -20.39936 -19.89616 -19.36214 -19.10846 -18.73136 -18.45641 -17.97636 -17.10115 -16.87962 -16.68386 -16.15983 -15.68639 -15.32951 -15.24373 -15.16771 -14.81997 -14.31343 -14.22783 -13.45778 -13.43217 -13.21093 -13.11864 -12.82796 -12.76445 -12.60987 -12.39617 -12.35935 -12.32801 -12.25590 -12.02315 -11.68057 -11.26233 -10.83957 -10.69390 -10.48189 -10.31674 -9.72857 -8.86669 -7.85699 -5.48454 -1.40924 -0.29253 0.07221 0.19924 0.70610 1.45074 1.47178 1.47571 1.54609 1.70691 2.07046 2.34383 2.51210 2.60758 3.06289 3.27910 3.50441 3.52726 3.62997 3.71704 3.95632 4.11314 4.26927 4.38173 4.48037 4.51129 4.62839 4.79414 4.88440 4.91945 5.12288 5.20698 5.31773 5.61601 5.65593 6.13273 6.31161 6.44104 6.98619 7.05862 7.38847 7.68764 8.16549 9.13039 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.003749 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.554293 B = 7466.773425 C = 9441.209001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.132 4.132 3 C 0.280 3.720 4 N -0.573 5.573 5 C -0.275 4.275 6 H 0.063 0.937 7 C -0.030 4.030 8 N -0.906 5.906 9 Si 0.965 3.035 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.270 1.270 13 C 0.133 3.867 14 C 0.490 3.510 15 O -0.532 6.532 16 N -0.667 5.667 17 C 0.231 3.769 18 C -0.141 4.141 19 C 0.035 3.965 20 Cl -0.033 7.033 21 C -0.116 4.116 22 C -0.008 4.008 23 C -0.093 4.093 24 N 0.042 4.958 25 O -0.144 6.144 26 O -0.204 6.204 27 H 0.223 0.777 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.250 0.750 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.433 0.567 34 H 0.143 0.857 35 H 0.197 0.803 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -17.169 -2.736 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.135 4.135 3 C 0.155 3.845 4 N -0.291 5.291 5 C -0.405 4.405 6 H 0.081 0.919 7 C -0.228 4.228 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.195 1.195 13 C 0.002 3.998 14 C 0.278 3.722 15 O -0.405 6.405 16 N -0.321 5.321 17 C 0.130 3.870 18 C -0.163 4.163 19 C 0.007 3.993 20 Cl -0.003 7.003 21 C -0.136 4.136 22 C -0.028 4.028 23 C -0.181 4.181 24 N 0.555 4.445 25 O -0.366 6.366 26 O -0.405 6.405 27 H 0.240 0.760 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.278 0.722 34 H 0.161 0.839 35 H 0.214 0.786 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.583 -15.800 -2.720 21.672 hybrid contribution -0.733 0.838 0.799 1.370 sum 13.850 -14.962 -1.922 20.478 Atomic orbital electron populations 1.24927 0.96180 1.04843 1.04047 1.24227 0.95638 0.96706 0.96890 1.17405 0.83316 0.97372 0.86439 1.43581 1.73742 0.99792 1.11993 1.19212 1.13184 1.00860 1.07202 0.91923 1.25886 0.95892 1.00978 1.00073 1.70121 1.20385 1.22804 1.41536 0.85322 0.76854 0.79010 0.79440 1.21640 1.21878 1.19470 1.20893 0.90609 0.85651 1.02690 1.23557 0.92762 0.80291 0.75639 1.90659 1.51902 1.53927 1.44044 1.44608 1.10387 1.10476 1.66633 1.17543 0.87068 0.90789 0.91600 1.21038 0.89674 1.01923 1.03686 1.21283 0.88540 0.93201 0.96256 1.98435 1.41390 1.68594 1.91886 1.21413 1.01641 0.91230 0.99335 1.21245 0.86892 1.01400 0.93235 1.21197 0.87771 0.95290 1.13807 1.43535 1.02165 1.00551 0.98219 1.94503 1.91783 1.13393 1.36897 1.94403 1.10695 1.77171 1.58264 0.75996 0.92372 0.93549 0.94031 0.88538 0.87811 0.72201 0.83887 0.78557 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.29 19.22 74.32 1.43 -10.87 16 2 C -0.13 -6.34 11.17 31.12 0.35 -6.00 16 3 C 0.28 13.64 5.41 84.57 0.46 14.10 16 4 N -0.57 -27.65 1.95 -716.90 -1.40 -29.06 16 5 C -0.27 -14.58 9.56 84.03 0.80 -13.78 16 6 H 0.06 3.32 7.84 -2.91 -0.02 3.29 16 7 C -0.03 -1.64 5.15 84.86 0.44 -1.20 16 8 N -0.91 -51.01 9.30 21.65 0.20 -50.81 16 9 Si 0.97 44.22 29.56 68.60 2.03 46.25 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.13 5.00 6.15 85.63 0.53 5.53 16 14 C 0.49 17.53 7.64 87.66 0.67 18.20 16 15 O -0.53 -22.79 14.19 -3.02 -0.04 -22.83 16 16 N -0.67 -18.93 4.70 -303.51 -1.42 -20.36 16 17 C 0.23 6.00 6.24 38.15 0.24 6.24 16 18 C -0.14 -3.64 8.44 22.41 0.19 -3.45 16 19 C 0.04 0.67 6.32 22.31 0.14 0.81 16 20 Cl -0.03 -0.60 28.95 -2.72 -0.08 -0.68 16 21 C -0.12 -1.41 9.83 22.32 0.22 -1.19 16 22 C -0.01 -0.12 9.55 22.25 0.21 0.10 16 23 C -0.09 -2.02 6.86 36.50 0.25 -1.77 16 24 N 0.04 1.04 4.45 -46.16 -0.21 0.83 16 25 O -0.14 -3.45 18.46 18.89 0.35 -3.10 16 26 O -0.20 -5.56 15.94 18.88 0.30 -5.26 16 27 H 0.22 7.81 7.80 -4.42 -0.03 7.77 16 28 H 0.06 3.18 6.99 -2.39 -0.02 3.17 16 29 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 30 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.10 3.28 8.07 -2.39 -0.02 3.27 16 32 H 0.10 3.61 8.04 -2.39 -0.02 3.59 16 33 H 0.43 10.74 6.25 -92.71 -0.58 10.16 16 34 H 0.14 4.49 6.50 -2.91 -0.02 4.48 16 35 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.20 1.46 7.62 -2.91 -0.02 1.44 16 Total: -1.00 -67.83 343.95 6.22 -61.61 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.57 Total: 16.68 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.92 Total: 6.72 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -2.83 Total: -99.39 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: 0.61 Total: -31.19 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -67.83 6.22 -61.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645395643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.382 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds