Wall clock time and date at job start Tue Mar 31 2020 20:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48503 * 109.46826 * 240.00412 * 3 2 1 5 5 H 1.48499 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47485 * 120.00339 * 3 2 1 7 7 C 1.39945 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99917 * 197.84814 * 7 2 1 9 9 C 1.41400 * 120.00372 * 17.84090 * 7 2 1 10 10 C 1.40709 * 120.24466 * 204.38942 * 9 7 2 11 11 C 1.37620 * 119.74511 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24383 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.74515 * 179.97438 * 12 11 10 14 14 S 1.81400 * 109.47196 * 90.00178 * 13 12 11 15 15 O 1.42105 * 110.54607 * 68.37408 * 14 13 12 16 16 O 1.42102 * 110.53884 * 291.62194 * 14 13 12 17 17 O 1.52200 * 104.44822 * 179.97438 * 14 13 12 18 18 C 1.35965 * 114.00179 * 75.00292 * 17 14 13 19 19 C 1.38954 * 120.48370 * 89.99697 * 18 17 14 20 20 C 1.38661 * 118.40735 * 179.97438 * 19 18 17 21 21 C 1.38142 * 119.27107 * 0.02562 * 20 19 18 22 22 N 1.31936 * 120.90914 * 0.02562 * 21 20 19 23 23 C 1.31974 * 121.74316 * 359.97438 * 22 21 20 24 24 F 1.35096 * 119.68377 * 180.02562 * 23 22 21 25 25 C 1.38633 * 120.50602 * 0.25611 * 12 11 10 26 26 C 1.37619 * 120.24295 * 359.44531 * 25 12 11 27 27 H 0.97000 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.13151 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87811 * 180.02562 * 11 10 9 30 30 H 1.09000 * 109.47333 * 330.00194 * 13 12 11 31 31 H 1.09005 * 109.46897 * 209.99949 * 13 12 11 32 32 H 1.07997 * 120.80092 * 0.24694 * 19 18 17 33 33 H 1.08001 * 120.37015 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.54488 * 180.02562 * 21 20 19 35 35 H 1.07998 * 119.87667 * 179.70867 * 25 12 11 36 36 H 1.08000 * 120.12390 * 180.27393 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4070 -0.3762 10 6 1.8256 -3.6499 0.0826 11 6 1.1795 -4.8066 -0.2899 12 6 0.0664 -4.7502 -1.1143 13 6 -0.6321 -6.0238 -1.5157 14 16 -1.9237 -6.4132 -0.3029 15 8 -2.9775 -5.4624 -0.3740 16 8 -1.3448 -6.7732 0.9439 17 8 -2.5481 -7.7036 -0.8141 18 6 -1.7810 -8.8076 -0.6107 19 6 -1.9070 -9.5479 0.5585 20 6 -1.1036 -10.6663 0.7210 21 6 -0.2100 -11.0066 -0.2760 22 7 -0.1127 -10.2829 -1.3749 23 6 -0.8584 -9.2115 -1.5690 24 9 -0.7247 -8.5012 -2.7103 25 6 -0.4056 -3.5316 -1.5770 26 6 0.2210 -2.3618 -1.2124 27 1 -0.4850 0.8400 0.0004 28 1 2.6933 -3.6962 0.7239 29 1 1.5410 -5.7617 0.0614 30 1 0.0906 -6.8390 -1.5510 31 1 -1.0840 -5.8959 -2.4993 32 1 -2.6168 -9.2617 1.3205 33 1 -1.1756 -11.2648 1.6171 34 1 0.4176 -11.8771 -0.1542 35 1 -1.2708 -3.4998 -2.2226 36 1 -0.1510 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667946516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:20 Heat of formation + Delta-G solvation = -84.992458 kcal Electronic energy + Delta-G solvation = -26461.900740 eV Core-core repulsion = 22339.783604 eV Total energy + Delta-G solvation = -4122.117136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.52678 -41.35822 -39.29244 -37.83144 -36.87269 -35.74660 -34.23303 -32.89807 -31.61679 -30.85808 -29.48562 -27.97163 -24.76450 -24.50872 -24.03255 -21.30285 -21.15506 -20.21352 -18.72244 -18.38661 -18.04516 -17.72540 -17.47502 -16.50892 -16.21935 -15.78593 -15.50005 -14.98582 -14.61041 -14.33113 -14.12750 -13.97885 -13.89427 -13.56897 -13.27939 -12.84998 -12.69027 -12.43648 -12.24162 -12.12236 -11.96395 -11.83045 -11.78108 -11.44275 -11.18148 -11.07146 -10.68172 -10.46874 -10.35320 -10.27278 -9.85377 -9.57182 -9.44593 -9.26315 -7.66023 -7.50559 -6.95948 -4.53271 -0.10728 0.46113 0.70157 2.15545 2.59833 2.90485 2.92292 2.98338 3.00020 3.00363 3.08539 3.77952 3.79301 3.92124 4.06032 4.28345 4.37069 4.43737 4.55437 4.95799 5.13108 5.17855 5.28064 5.41279 5.49566 5.55324 5.98538 6.09042 6.14910 6.22867 6.79732 6.87516 7.01270 7.05152 7.14058 7.41517 7.61708 7.85600 7.85925 8.08005 8.43137 8.67238 8.75484 9.97128 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.003031 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.754717 B = 9235.094001 C = 9506.844236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.118 3.882 10 C -0.224 4.224 11 C -0.065 4.065 12 C -0.236 4.236 13 C -0.531 4.531 14 S 2.538 3.462 15 O -0.923 6.923 16 O -0.957 6.957 17 O -0.667 6.667 18 C 0.011 3.989 19 C -0.025 4.025 20 C -0.163 4.163 21 C 0.143 3.857 22 N -0.489 5.489 23 C 0.304 3.696 24 F -0.095 7.095 25 C -0.079 4.079 26 C -0.166 4.166 27 H 0.287 0.713 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.097 0.903 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -17.594 -0.246 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.115 3.885 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.242 4.242 13 C -0.660 4.660 14 S 2.642 3.358 15 O -0.921 6.921 16 O -0.955 6.955 17 O -0.623 6.623 18 C -0.035 4.035 19 C -0.052 4.052 20 C -0.183 4.183 21 C -0.013 4.013 22 N -0.205 5.205 23 C 0.148 3.852 24 F -0.074 7.074 25 C -0.099 4.099 26 C -0.185 4.185 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.115 0.885 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.447 -17.663 -0.435 17.837 hybrid contribution 0.022 1.342 -0.069 1.344 sum -2.425 -16.321 -0.504 16.508 Atomic orbital electron populations 1.69813 1.07770 1.30110 1.32235 1.26050 0.94830 1.01812 0.92118 0.86252 0.80129 0.79588 0.80199 1.18581 1.20088 1.18749 1.19750 0.98334 0.91179 1.38082 0.89808 1.17742 0.90784 0.92176 0.87828 1.20969 1.04046 0.92477 1.06945 1.20446 0.94461 0.97197 0.96380 1.18013 1.03339 0.90008 1.12824 1.29191 1.15053 1.06487 1.15278 1.08087 0.76816 0.73395 0.77487 1.93590 1.53392 1.58230 1.86927 1.93557 1.79809 1.80029 1.42105 1.85879 1.59367 1.30467 1.86625 1.18783 0.96084 0.91491 0.97132 1.21853 0.97102 0.92004 0.94265 1.22246 0.96754 0.97543 1.01772 1.22821 0.95023 0.96921 0.86584 1.67218 1.23379 1.04832 1.25068 1.18351 0.93055 0.90625 0.83210 1.91714 1.94397 1.74577 1.46671 1.20631 0.98213 0.92326 0.98700 1.21327 0.99332 0.96767 1.01117 0.90178 0.88214 0.88777 0.86343 0.85063 0.81956 0.82203 0.80186 0.88492 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.46 10.95 55.55 0.61 -18.85 16 2 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.44 -11.32 9.05 -37.74 -0.34 -11.66 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 9 C 0.12 3.08 5.57 -106.83 -0.60 2.49 16 10 C -0.22 -5.43 9.80 -38.87 -0.38 -5.81 16 11 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 12 C -0.24 -5.24 5.16 -104.33 -0.54 -5.78 16 13 C -0.53 -9.55 4.78 36.01 0.17 -9.37 16 14 S 2.54 47.55 5.15 -107.50 -0.55 46.99 16 15 O -0.92 -20.40 18.09 -67.04 -1.21 -21.61 16 16 O -0.96 -18.87 16.28 -67.03 -1.09 -19.96 16 17 O -0.67 -10.53 9.94 -51.95 -0.52 -11.05 16 18 C 0.01 0.16 4.82 -39.03 -0.19 -0.03 16 19 C -0.03 -0.26 9.21 -39.16 -0.36 -0.62 16 20 C -0.16 -1.14 10.10 -39.46 -0.40 -1.54 16 21 C 0.14 1.09 11.17 -17.54 -0.20 0.89 16 22 N -0.49 -5.66 10.37 -13.48 -0.14 -5.80 16 23 C 0.30 4.06 7.48 -17.20 -0.13 3.93 16 24 F -0.09 -1.32 14.72 2.25 0.03 -1.29 16 25 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 26 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 27 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 29 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.12 1.89 6.04 -51.92 -0.31 1.58 16 31 H 0.13 2.06 8.08 -51.92 -0.42 1.64 16 32 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -32.24 331.56 -10.20 -42.44 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.14 Total: 5.91 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: -4.15 Total: -34.56 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.47 Total: -24.65 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -2.82 Total: -52.62 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.55 Total: 46.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.24 -10.20 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667946516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.548 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds