Wall clock time and date at job start Tue Mar 31 2020 20:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48503 * 109.46826 * 240.00412 * 3 2 1 5 5 H 1.48499 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47485 * 120.00339 * 3 2 1 7 7 C 1.39945 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99917 * 197.84814 * 7 2 1 9 9 C 1.41400 * 120.00372 * 17.84090 * 7 2 1 10 10 C 1.40709 * 120.24466 * 204.38942 * 9 7 2 11 11 C 1.37620 * 119.74511 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24383 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.74515 * 179.97438 * 12 11 10 14 14 S 1.81400 * 109.47196 * 90.00178 * 13 12 11 15 15 O 1.42105 * 110.54607 * 68.37408 * 14 13 12 16 16 O 1.42102 * 110.53884 * 291.62194 * 14 13 12 17 17 O 1.52200 * 104.44822 * 179.97438 * 14 13 12 18 18 C 1.35965 * 114.00179 * 75.00292 * 17 14 13 19 19 C 1.38954 * 120.48370 * 89.99697 * 18 17 14 20 20 C 1.38661 * 118.40735 * 179.97438 * 19 18 17 21 21 C 1.38142 * 119.27107 * 0.02562 * 20 19 18 22 22 N 1.31936 * 120.90914 * 0.02562 * 21 20 19 23 23 C 1.31974 * 121.74316 * 359.97438 * 22 21 20 24 24 F 1.35096 * 119.68377 * 180.02562 * 23 22 21 25 25 C 1.38633 * 120.50602 * 0.25611 * 12 11 10 26 26 C 1.37619 * 120.24295 * 359.44531 * 25 12 11 27 27 H 0.97000 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.13151 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87811 * 180.02562 * 11 10 9 30 30 H 1.09000 * 109.47333 * 330.00194 * 13 12 11 31 31 H 1.09005 * 109.46897 * 209.99949 * 13 12 11 32 32 H 1.07997 * 120.80092 * 0.24694 * 19 18 17 33 33 H 1.08001 * 120.37015 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.54488 * 180.02562 * 21 20 19 35 35 H 1.07998 * 119.87667 * 179.70867 * 25 12 11 36 36 H 1.08000 * 120.12390 * 180.27393 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4070 -0.3762 10 6 1.8256 -3.6499 0.0826 11 6 1.1795 -4.8066 -0.2899 12 6 0.0664 -4.7502 -1.1143 13 6 -0.6321 -6.0238 -1.5157 14 16 -1.9237 -6.4132 -0.3029 15 8 -2.9775 -5.4624 -0.3740 16 8 -1.3448 -6.7732 0.9439 17 8 -2.5481 -7.7036 -0.8141 18 6 -1.7810 -8.8076 -0.6107 19 6 -1.9070 -9.5479 0.5585 20 6 -1.1036 -10.6663 0.7210 21 6 -0.2100 -11.0066 -0.2760 22 7 -0.1127 -10.2829 -1.3749 23 6 -0.8584 -9.2115 -1.5690 24 9 -0.7247 -8.5012 -2.7103 25 6 -0.4056 -3.5316 -1.5770 26 6 0.2210 -2.3618 -1.2124 27 1 -0.4850 0.8400 0.0004 28 1 2.6933 -3.6962 0.7239 29 1 1.5410 -5.7617 0.0614 30 1 0.0906 -6.8390 -1.5510 31 1 -1.0840 -5.8959 -2.4993 32 1 -2.6168 -9.2617 1.3205 33 1 -1.1756 -11.2648 1.6171 34 1 0.4176 -11.8771 -0.1542 35 1 -1.2708 -3.4998 -2.2226 36 1 -0.1510 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667946516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:19 Heat of formation + Delta-G solvation = -106.364200 kcal Electronic energy + Delta-G solvation = -26462.827488 eV Core-core repulsion = 22339.783604 eV Total energy + Delta-G solvation = -4123.043885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.49880 -42.37030 -40.26513 -39.64995 -38.44256 -37.32186 -36.02072 -33.67320 -33.35167 -31.68427 -31.34376 -29.70555 -26.18690 -25.62934 -24.97588 -23.08785 -22.59123 -21.82026 -19.88158 -19.36598 -19.32867 -19.16206 -18.93843 -17.79203 -17.34100 -17.21515 -16.75809 -16.20102 -16.15548 -15.75259 -15.60221 -15.46448 -14.88175 -14.59607 -14.35955 -14.15668 -13.96585 -13.93240 -13.82969 -13.68672 -13.58857 -13.43063 -13.34706 -13.11703 -12.85980 -12.76343 -12.25337 -12.08716 -11.62867 -11.40672 -11.25189 -11.08309 -11.03601 -10.27072 -9.53465 -9.36316 -8.74655 -6.44561 -1.31336 -0.44590 -0.20405 0.80542 0.90118 1.01956 1.37695 1.49135 1.52479 2.05674 2.16760 2.25105 2.42113 2.64437 2.72306 3.01978 3.45362 3.56290 3.60188 3.64067 3.72911 3.85773 4.31324 4.37129 4.41176 4.49095 4.51067 4.69789 4.84375 4.94385 5.04498 5.19100 5.28949 5.32910 5.55948 5.76638 5.97201 5.98533 6.22124 6.28039 6.55490 6.80247 6.87866 8.21866 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.003031 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.754717 B = 9235.094001 C = 9506.844236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.484 4.484 8 H 0.087 0.913 9 C 0.088 3.912 10 C -0.241 4.241 11 C -0.072 4.072 12 C -0.236 4.236 13 C -0.536 4.536 14 S 2.569 3.431 15 O -0.965 6.965 16 O -0.969 6.969 17 O -0.660 6.660 18 C -0.033 4.033 19 C -0.038 4.038 20 C -0.138 4.138 21 C 0.155 3.845 22 N -0.509 5.509 23 C 0.286 3.714 24 F -0.108 7.108 25 C -0.091 4.091 26 C -0.192 4.192 27 H 0.293 0.707 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.211 0.789 34 H 0.230 0.770 35 H 0.112 0.888 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 -20.621 0.650 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.105 0.895 9 C 0.085 3.915 10 C -0.261 4.261 11 C -0.091 4.091 12 C -0.240 4.240 13 C -0.665 4.665 14 S 2.672 3.328 15 O -0.963 6.963 16 O -0.967 6.967 17 O -0.617 6.617 18 C -0.079 4.079 19 C -0.065 4.065 20 C -0.158 4.158 21 C -0.001 4.001 22 N -0.225 5.225 23 C 0.130 3.870 24 F -0.087 7.087 25 C -0.110 4.110 26 C -0.212 4.212 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.171 0.829 32 H 0.192 0.808 33 H 0.228 0.772 34 H 0.246 0.754 35 H 0.130 0.870 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.747 -20.653 0.459 20.732 hybrid contribution -0.262 1.765 -0.330 1.814 sum -2.009 -18.888 0.130 18.995 Atomic orbital electron populations 1.69873 1.09345 1.31346 1.33371 1.26942 0.95505 1.05060 0.90927 0.85133 0.78701 0.74886 0.80331 1.18199 1.19171 1.17977 1.20011 0.98785 0.92203 1.40239 0.89489 1.18096 0.91447 0.93409 0.88560 1.21217 1.04800 0.92618 1.07456 1.20802 0.94323 0.97930 0.96052 1.18335 1.03075 0.91104 1.11480 1.29243 1.15595 1.05170 1.16530 1.06717 0.75950 0.73288 0.76860 1.93547 1.54762 1.60569 1.87454 1.93525 1.80032 1.80382 1.42762 1.85814 1.58933 1.30520 1.86463 1.19296 0.97655 0.91695 0.99243 1.22302 0.97991 0.92791 0.93391 1.22838 0.94154 0.95862 1.02900 1.23813 0.94514 0.96860 0.84958 1.67340 1.23443 1.04702 1.26993 1.18520 0.93820 0.91554 0.83065 1.91668 1.94563 1.75067 1.47366 1.20918 0.98604 0.92544 0.98979 1.21334 1.00395 0.97017 1.02432 0.89561 0.87112 0.85880 0.83984 0.82931 0.80768 0.77235 0.75387 0.86967 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.67 10.95 21.83 0.24 -42.43 16 2 C 0.03 1.62 5.14 85.26 0.44 2.05 16 3 Si 0.99 37.22 29.60 68.60 2.03 39.25 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.48 -25.70 9.05 23.46 0.21 -25.49 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.09 4.80 5.57 -21.29 -0.12 4.68 16 10 C -0.24 -11.95 9.80 22.73 0.22 -11.73 16 11 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 12 C -0.24 -10.46 5.16 -19.67 -0.10 -10.56 16 13 C -0.54 -18.79 4.78 71.24 0.34 -18.45 16 14 S 2.57 94.72 5.15 -56.49 -0.29 94.43 16 15 O -0.97 -43.05 18.09 -118.57 -2.15 -45.20 16 16 O -0.97 -37.10 16.28 -118.57 -1.93 -39.03 16 17 O -0.66 -20.30 9.94 -62.25 -0.62 -20.92 16 18 C -0.03 -0.84 4.82 22.63 0.11 -0.73 16 19 C -0.04 -0.67 9.21 22.54 0.21 -0.47 16 20 C -0.14 -1.21 10.10 22.35 0.23 -0.99 16 21 C 0.15 1.57 11.17 84.65 0.95 2.52 16 22 N -0.51 -10.21 10.37 -196.57 -2.04 -12.24 16 23 C 0.29 7.13 7.48 84.86 0.63 7.77 16 24 F -0.11 -2.91 14.72 44.97 0.66 -2.25 16 25 C -0.09 -4.43 9.67 22.22 0.21 -4.22 16 26 C -0.19 -10.38 8.70 22.73 0.20 -10.18 16 27 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 28 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 29 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.14 4.31 6.04 -2.39 -0.01 4.30 16 31 H 0.15 4.66 8.08 -2.39 -0.02 4.64 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.21 -0.25 8.06 -2.91 -0.02 -0.28 16 34 H 0.23 -0.01 8.06 -2.91 -0.02 -0.03 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 Total: -1.00 -74.84 331.56 0.79 -74.05 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.14 Total: 23.14 kcal Atomic # 6 Polarization: -72.55 SS G_CDS: 3.74 Total: -68.80 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.80 Total: -54.67 kcal Atomic # 8 Polarization: -100.45 SS G_CDS: -4.69 Total: -105.15 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.66 Total: -2.25 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 94.72 SS G_CDS: -0.29 Total: 94.43 kcal Total: -74.84 0.79 -74.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667946516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.316 kcal (2) G-P(sol) polarization free energy of solvation -74.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds