Wall clock time and date at job start Tue Mar 31 2020 20:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47143 * 317.83617 * 3 2 1 5 5 C 1.50706 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.99964 * 90.00939 * 5 4 3 7 7 C 1.38235 * 120.00310 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99829 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.00019 * 179.97438 * 8 7 6 10 10 O 1.42100 * 106.40198 * 203.53954 * 9 8 7 11 11 O 1.42096 * 106.39959 * 336.46020 * 9 8 7 12 12 N 1.65599 * 107.21658 * 90.00010 * 9 8 7 13 13 C 1.46501 * 120.00418 * 65.00023 * 12 9 8 14 14 C 1.50700 * 109.47282 * 165.00028 * 13 12 9 15 15 O 1.21295 * 120.00026 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99864 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 16 14 19 19 C 1.38946 * 119.99969 * 180.02562 * 17 16 14 20 20 N 1.31421 * 119.99801 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00273 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46555 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46881 * 119.99699 * 21 19 17 24 24 H 1.48493 * 109.47311 * 239.99789 * 21 19 17 25 25 C 1.38238 * 119.99674 * 0.25365 * 8 7 6 26 26 C 1.38228 * 120.00121 * 359.49261 * 25 8 7 27 27 H 1.09004 * 109.46732 * 197.83914 * 3 2 1 28 28 H 1.08997 * 109.47127 * 77.84450 * 3 2 1 29 29 H 1.09000 * 109.46629 * 60.00661 * 4 3 2 30 30 H 1.08992 * 109.47351 * 300.00262 * 4 3 2 31 31 H 1.08005 * 119.99901 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 33 33 H 0.97001 * 119.99869 * 244.99817 * 12 9 8 34 34 H 1.09005 * 109.46517 * 285.00137 * 13 12 9 35 35 H 1.08996 * 109.46781 * 44.99791 * 13 12 9 36 36 H 0.96998 * 119.99454 * 359.97438 * 16 14 13 37 37 H 0.96995 * 119.99484 * 180.02562 * 20 19 17 38 38 H 1.08004 * 119.99572 * 179.72682 * 25 8 7 39 39 H 1.08004 * 120.00400 * 180.25458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0683 0.9683 5 6 4.6255 -1.0672 0.9687 6 6 5.3158 -0.2633 1.8564 7 6 6.6981 -0.2626 1.8572 8 6 7.3902 -1.0653 0.9698 9 16 9.1522 -1.0639 0.9703 10 8 9.5542 -1.4985 -0.3215 11 8 9.5522 0.1786 1.5317 12 7 9.6430 -2.2363 2.0319 13 6 9.3489 -3.6446 1.7553 14 6 10.1952 -4.5186 2.6447 15 8 10.9684 -4.0147 3.4317 16 7 10.0937 -5.8602 2.5647 17 6 10.8633 -6.6553 3.3741 18 1 11.5511 -6.2066 4.0755 19 6 10.7590 -8.0384 3.2913 20 7 9.9224 -8.5843 2.4375 21 14 11.8081 -9.1218 4.3937 22 1 12.6608 -8.2684 5.2596 23 1 10.9276 -9.9639 5.2427 24 1 12.6692 -9.9942 3.5556 25 6 6.6999 -1.8649 0.0781 26 6 5.3176 -1.8695 0.0809 27 1 2.9708 0.9791 0.3148 28 1 2.9714 -0.2156 -1.0046 29 1 2.7556 -2.0467 0.6534 30 1 2.7550 -0.8520 1.9728 31 1 4.7751 0.3642 2.5495 32 1 7.2374 0.3658 2.5506 33 1 10.1253 -1.9906 2.8368 34 1 8.2945 -3.8406 1.9503 35 1 9.5722 -3.8641 0.7113 36 1 9.4757 -6.2631 1.9350 37 1 9.8494 -9.5498 2.3800 38 1 7.2406 -2.4887 -0.6182 39 1 4.7782 -2.4972 -0.6130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663225641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:28 Heat of formation + Delta-G solvation = -66.890888 kcal Electronic energy + Delta-G solvation = -25319.496672 eV Core-core repulsion = 21353.917535 eV Total energy + Delta-G solvation = -3965.579137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85435 -38.47347 -37.33321 -37.20063 -35.82952 -34.74169 -34.62484 -33.73764 -31.38909 -31.37255 -30.56966 -27.19797 -25.62161 -24.37230 -23.21711 -21.90215 -19.73097 -19.50646 -18.23648 -18.16957 -18.07283 -17.42008 -16.47787 -15.93770 -15.78830 -15.55611 -15.14093 -14.90642 -14.69914 -14.50923 -14.34647 -14.24130 -13.84622 -13.69404 -13.52349 -13.08544 -13.02248 -12.54487 -12.37361 -12.22147 -12.19925 -12.06574 -11.99017 -11.93047 -11.76927 -11.57363 -11.35894 -11.17391 -10.91900 -10.42297 -10.33461 -9.67438 -9.55190 -9.41881 -9.34136 -8.63615 -8.12033 -6.54001 -3.95532 0.28731 0.56615 0.99736 2.26963 2.32003 2.91997 3.08815 3.21310 3.23942 3.28910 3.42977 3.69721 3.79690 4.07682 4.18769 4.32310 4.33875 4.48460 4.60732 4.63796 4.80178 4.86773 4.98745 5.03849 5.13313 5.29309 5.30368 5.39631 5.45194 5.63102 5.71947 5.77848 5.80734 5.83072 6.05883 6.23820 6.50609 7.08099 7.21066 7.44738 7.91512 8.43639 9.03502 9.37008 9.85503 10.63076 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.002537 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.484220 B =11033.816855 C =12632.240902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.205 3.795 3 C -0.022 4.022 4 C -0.083 4.083 5 C -0.035 4.035 6 C -0.136 4.136 7 C -0.014 4.014 8 C -0.675 4.675 9 S 2.699 3.301 10 O -0.957 6.957 11 O -0.961 6.961 12 N -1.096 6.096 13 C 0.106 3.894 14 C 0.435 3.565 15 O -0.589 6.589 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.017 4.017 26 C -0.134 4.134 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.428 0.572 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.144 0.856 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 14.238 -5.614 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.112 4.112 3 C -0.062 4.062 4 C -0.122 4.122 5 C -0.036 4.036 6 C -0.155 4.155 7 C -0.034 4.034 8 C -0.761 4.761 9 S 2.787 3.213 10 O -0.947 6.947 11 O -0.951 6.951 12 N -0.861 5.861 13 C -0.025 4.025 14 C 0.219 3.781 15 O -0.474 6.474 16 N -0.188 5.188 17 C -0.432 4.432 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.036 4.036 26 C -0.153 4.153 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.467 14.844 -5.775 20.858 hybrid contribution -0.031 -1.097 0.669 1.285 sum -13.498 13.747 -5.106 19.931 Atomic orbital electron populations 1.81273 1.13082 1.08372 1.08445 1.29164 0.95223 0.93442 0.93418 1.19284 0.81473 1.02312 1.03120 1.20634 0.91166 0.99748 1.00641 1.19984 0.94858 0.94431 0.94303 1.21180 0.94181 1.00263 0.99884 1.20951 0.94660 0.93601 0.94161 1.31118 1.27706 1.09650 1.07674 1.01709 0.73603 0.72585 0.73362 1.93588 1.80387 1.82071 1.38665 1.93583 1.81437 1.41159 1.78914 1.55091 1.72054 1.17181 1.41739 1.20953 0.99709 0.80881 1.00920 1.19602 0.87545 0.83336 0.87637 1.90514 1.41742 1.73471 1.41705 1.41820 1.37378 1.03915 1.35691 1.19783 1.19073 0.87458 1.16933 0.87612 1.25311 0.97497 0.97334 0.97620 1.69615 1.36065 1.12367 1.35629 0.85764 0.79373 0.79504 0.79497 1.19133 1.20666 1.20618 1.21019 0.94766 0.93625 0.94185 1.21204 0.94190 1.00166 0.99754 0.86919 0.86861 0.89281 0.89388 0.84878 0.84046 0.73287 0.90229 0.88666 0.77127 0.91685 0.83815 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.38 18.54 42.15 0.78 -3.59 16 2 C 0.21 1.30 15.43 -20.76 -0.32 0.98 16 3 C -0.02 -0.06 5.68 -29.52 -0.17 -0.22 16 4 C -0.08 -0.29 5.30 -27.88 -0.15 -0.44 16 5 C -0.04 -0.21 5.13 -104.62 -0.54 -0.75 16 6 C -0.14 -0.93 9.70 -39.59 -0.38 -1.31 16 7 C -0.01 -0.13 9.52 -39.58 -0.38 -0.51 16 8 C -0.68 -7.07 5.95 -39.58 -0.24 -7.30 16 9 S 2.70 35.52 5.74 -107.50 -0.62 34.90 16 10 O -0.96 -14.78 16.75 -57.17 -0.96 -15.74 16 11 O -0.96 -14.53 17.28 -57.17 -0.99 -15.52 16 12 N -1.10 -16.05 5.93 -11.65 -0.07 -16.12 16 13 C 0.11 1.66 6.70 -5.19 -0.03 1.62 16 14 C 0.43 9.47 7.85 -10.98 -0.09 9.39 16 15 O -0.59 -14.81 15.30 5.54 0.08 -14.73 16 16 N -0.55 -13.05 5.29 -10.96 -0.06 -13.11 16 17 C -0.30 -8.01 9.68 -14.94 -0.14 -8.16 16 18 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 20 N -0.90 -23.16 13.05 55.50 0.72 -22.43 16 21 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 25 C -0.02 -0.15 9.52 -39.58 -0.38 -0.53 16 26 C -0.13 -0.93 9.70 -39.59 -0.38 -1.31 16 27 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.09 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.14 1.17 7.62 -52.49 -0.40 0.77 16 33 H 0.43 6.61 7.70 -34.47 -0.27 6.34 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.35 7.75 -51.93 -0.40 0.95 16 36 H 0.40 8.76 7.90 -40.82 -0.32 8.44 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.14 1.20 7.61 -52.48 -0.40 0.80 16 39 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -35.85 365.19 -8.17 -44.01 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.25 Total: 9.72 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.29 Total: -8.00 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 1.38 Total: -55.26 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.86 Total: -45.99 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 35.52 SS G_CDS: -0.62 Total: 34.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.85 -8.17 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663225641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.877 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds