Wall clock time and date at job start Tue Mar 31 2020 20:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47143 * 317.83617 * 3 2 1 5 5 C 1.50706 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.99964 * 90.00939 * 5 4 3 7 7 C 1.38235 * 120.00310 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99829 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.00019 * 179.97438 * 8 7 6 10 10 O 1.42100 * 106.40198 * 203.53954 * 9 8 7 11 11 O 1.42096 * 106.39959 * 336.46020 * 9 8 7 12 12 N 1.65599 * 107.21658 * 90.00010 * 9 8 7 13 13 C 1.46501 * 120.00418 * 65.00023 * 12 9 8 14 14 C 1.50700 * 109.47282 * 165.00028 * 13 12 9 15 15 O 1.21295 * 120.00026 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99864 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 16 14 19 19 C 1.38946 * 119.99969 * 180.02562 * 17 16 14 20 20 N 1.31421 * 119.99801 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00273 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46555 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46881 * 119.99699 * 21 19 17 24 24 H 1.48493 * 109.47311 * 239.99789 * 21 19 17 25 25 C 1.38238 * 119.99674 * 0.25365 * 8 7 6 26 26 C 1.38228 * 120.00121 * 359.49261 * 25 8 7 27 27 H 1.09004 * 109.46732 * 197.83914 * 3 2 1 28 28 H 1.08997 * 109.47127 * 77.84450 * 3 2 1 29 29 H 1.09000 * 109.46629 * 60.00661 * 4 3 2 30 30 H 1.08992 * 109.47351 * 300.00262 * 4 3 2 31 31 H 1.08005 * 119.99901 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 33 33 H 0.97001 * 119.99869 * 244.99817 * 12 9 8 34 34 H 1.09005 * 109.46517 * 285.00137 * 13 12 9 35 35 H 1.08996 * 109.46781 * 44.99791 * 13 12 9 36 36 H 0.96998 * 119.99454 * 359.97438 * 16 14 13 37 37 H 0.96995 * 119.99484 * 180.02562 * 20 19 17 38 38 H 1.08004 * 119.99572 * 179.72682 * 25 8 7 39 39 H 1.08004 * 120.00400 * 180.25458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0683 0.9683 5 6 4.6255 -1.0672 0.9687 6 6 5.3158 -0.2633 1.8564 7 6 6.6981 -0.2626 1.8572 8 6 7.3902 -1.0653 0.9698 9 16 9.1522 -1.0639 0.9703 10 8 9.5542 -1.4985 -0.3215 11 8 9.5522 0.1786 1.5317 12 7 9.6430 -2.2363 2.0319 13 6 9.3489 -3.6446 1.7553 14 6 10.1952 -4.5186 2.6447 15 8 10.9684 -4.0147 3.4317 16 7 10.0937 -5.8602 2.5647 17 6 10.8633 -6.6553 3.3741 18 1 11.5511 -6.2066 4.0755 19 6 10.7590 -8.0384 3.2913 20 7 9.9224 -8.5843 2.4375 21 14 11.8081 -9.1218 4.3937 22 1 12.6608 -8.2684 5.2596 23 1 10.9276 -9.9639 5.2427 24 1 12.6692 -9.9942 3.5556 25 6 6.6999 -1.8649 0.0781 26 6 5.3176 -1.8695 0.0809 27 1 2.9708 0.9791 0.3148 28 1 2.9714 -0.2156 -1.0046 29 1 2.7556 -2.0467 0.6534 30 1 2.7550 -0.8520 1.9728 31 1 4.7751 0.3642 2.5495 32 1 7.2374 0.3658 2.5506 33 1 10.1253 -1.9906 2.8368 34 1 8.2945 -3.8406 1.9503 35 1 9.5722 -3.8641 0.7113 36 1 9.4757 -6.2631 1.9350 37 1 9.8494 -9.5498 2.3800 38 1 7.2406 -2.4887 -0.6182 39 1 4.7782 -2.4972 -0.6130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663225641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:28 Heat of formation + Delta-G solvation = -94.084955 kcal Electronic energy + Delta-G solvation = -25320.675895 eV Core-core repulsion = 21353.917535 eV Total energy + Delta-G solvation = -3966.758360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40115 -40.23062 -38.33482 -37.85661 -36.96240 -36.30660 -35.36566 -35.11273 -33.30351 -31.94720 -31.06364 -28.73503 -26.14276 -26.06731 -23.79294 -22.44342 -21.38842 -20.53271 -20.03659 -19.13522 -18.62393 -18.47468 -17.40673 -17.23690 -16.77506 -16.45028 -16.32041 -16.03301 -15.90534 -15.48187 -15.40613 -15.22223 -14.79309 -14.40079 -14.16244 -14.13779 -13.91684 -13.60250 -13.57626 -13.48688 -13.22132 -13.14544 -13.08105 -12.91143 -12.81075 -12.62908 -12.40333 -12.20779 -12.10405 -11.71577 -11.68604 -11.54164 -10.67496 -10.40136 -10.10018 -10.03867 -9.92218 -8.47853 -5.96525 -0.65127 -0.15944 0.42705 1.37251 1.44934 1.57999 1.79931 1.87378 1.96725 1.97741 2.31137 2.53858 2.81501 3.06571 3.10605 3.19853 3.38084 3.84555 3.93507 4.03635 4.05477 4.23673 4.25470 4.41976 4.46888 4.48148 4.54642 4.69007 4.78447 4.84178 4.94245 5.13243 5.18679 5.21491 5.27622 5.42498 5.56495 5.91332 5.96244 6.02974 6.55239 6.65649 7.09737 7.50774 8.03781 8.69153 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.002537 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.484220 B =11033.816855 C =12632.240902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.238 3.762 3 C -0.017 4.017 4 C -0.080 4.080 5 C -0.021 4.021 6 C -0.134 4.134 7 C -0.032 4.032 8 C -0.682 4.682 9 S 2.712 3.288 10 O -0.985 6.985 11 O -0.986 6.986 12 N -1.104 6.104 13 C 0.115 3.885 14 C 0.434 3.566 15 O -0.626 6.626 16 N -0.562 5.562 17 C -0.335 4.335 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.914 5.914 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.033 4.033 26 C -0.133 4.133 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.423 0.577 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.401 0.599 37 H 0.279 0.721 38 H 0.146 0.854 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 14.223 -6.037 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.078 4.078 3 C -0.057 4.057 4 C -0.118 4.118 5 C -0.022 4.022 6 C -0.153 4.153 7 C -0.051 4.051 8 C -0.773 4.773 9 S 2.806 3.194 10 O -0.975 6.975 11 O -0.977 6.977 12 N -0.866 5.866 13 C -0.015 4.015 14 C 0.220 3.780 15 O -0.514 6.514 16 N -0.199 5.199 17 C -0.465 4.465 18 H 0.099 0.901 19 C -0.210 4.210 20 N -0.554 5.554 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.053 4.053 26 C -0.151 4.151 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.236 0.764 37 H 0.089 0.911 38 H 0.164 0.836 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.225 14.824 -6.221 22.141 hybrid contribution 0.452 -1.007 0.783 1.353 sum -14.773 13.817 -5.438 20.945 Atomic orbital electron populations 1.81313 1.15443 1.10882 1.10976 1.29763 0.95680 0.91216 0.91186 1.19520 0.78754 1.03210 1.04203 1.20642 0.89175 1.00517 1.01492 1.20235 0.96072 0.92916 0.92937 1.21519 0.93199 1.00319 1.00225 1.21141 0.96003 0.93785 0.94218 1.30493 1.24839 1.12057 1.09891 1.00977 0.74691 0.71562 0.72180 1.93542 1.81960 1.82271 1.39761 1.93541 1.82859 1.42066 1.79187 1.55144 1.72928 1.16960 1.41578 1.20953 1.00281 0.80073 1.00167 1.20605 0.86966 0.83231 0.87215 1.90488 1.43343 1.74175 1.43382 1.41856 1.37623 1.04556 1.35867 1.19715 1.20197 0.88520 1.18026 0.90051 1.26024 0.98380 0.97909 0.98673 1.69662 1.36616 1.12944 1.36227 0.84883 0.77948 0.77694 0.77892 1.19844 1.19561 1.19767 1.21212 0.96051 0.93808 0.94199 1.21545 0.93267 1.00223 1.00109 0.84730 0.84735 0.88510 0.88529 0.82108 0.84039 0.73921 0.86579 0.86921 0.76419 0.91141 0.83591 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -9.66 18.54 20.01 0.37 -9.29 16 2 C 0.24 2.39 15.43 89.44 1.38 3.77 16 3 C -0.02 -0.01 5.68 28.79 0.16 0.15 16 4 C -0.08 -0.20 5.30 29.85 0.16 -0.04 16 5 C -0.02 -0.16 5.13 -19.87 -0.10 -0.26 16 6 C -0.13 -1.34 9.70 22.27 0.22 -1.12 16 7 C -0.03 -0.52 9.52 22.27 0.21 -0.31 16 8 C -0.68 -13.28 5.95 22.27 0.13 -13.14 16 9 S 2.71 71.23 5.74 -56.49 -0.32 70.90 16 10 O -0.99 -30.44 16.75 -128.00 -2.14 -32.58 16 11 O -0.99 -30.33 17.28 -128.00 -2.21 -32.55 16 12 N -1.10 -32.38 5.93 -190.79 -1.13 -33.51 16 13 C 0.12 3.53 6.70 85.63 0.57 4.10 16 14 C 0.43 19.11 7.85 87.66 0.69 19.80 16 15 O -0.63 -32.40 15.30 -3.08 -0.05 -32.45 16 16 N -0.56 -26.90 5.29 -306.98 -1.62 -28.52 16 17 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 20 N -0.91 -46.79 13.05 21.66 0.28 -46.51 16 21 Si 0.99 41.18 29.55 68.60 2.03 43.20 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 C -0.03 -0.53 9.52 22.27 0.21 -0.32 16 26 C -0.13 -1.33 9.70 22.27 0.22 -1.11 16 27 H 0.13 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.10 0.18 8.09 -2.39 -0.02 0.16 16 30 H 0.10 0.16 8.08 -2.39 -0.02 0.14 16 31 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.14 2.20 7.62 -2.91 -0.02 2.18 16 33 H 0.42 13.44 7.70 -96.74 -0.75 12.69 16 34 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.11 3.09 7.75 -2.39 -0.02 3.07 16 36 H 0.40 17.82 7.90 -92.71 -0.73 17.09 16 37 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 38 H 0.15 2.18 7.61 -2.91 -0.02 2.16 16 39 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -80.02 365.19 -0.02 -80.04 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.35 Total: 27.01 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.13 Total: -5.75 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -2.10 Total: -117.84 kcal Atomic # 8 Polarization: -93.17 SS G_CDS: -4.40 Total: -97.57 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.32 Total: 70.90 kcal Total: -80.02 -0.02 -80.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663225641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.040 kcal (2) G-P(sol) polarization free energy of solvation -80.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds