Wall clock time and date at job start Tue Mar 31 2020 21:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47258 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46769 * 299.99321 * 3 2 1 6 6 H 1.48498 * 109.47245 * 59.99298 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00220 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00297 * 263.84416 * 10 9 7 12 12 C 1.53001 * 109.47617 * 265.24121 * 11 10 9 13 13 C 1.53007 * 117.49786 * 243.62437 * 12 11 10 14 14 C 1.52991 * 117.50094 * 175.00123 * 12 11 10 15 15 C 1.34782 * 119.99598 * 83.84696 * 10 9 7 16 16 O 1.21357 * 119.99730 * 174.59813 * 15 10 9 17 17 C 1.49358 * 120.00258 * 354.87406 * 15 10 9 18 18 O 1.21365 * 119.99819 * 359.78508 * 17 15 10 19 19 N 1.34771 * 120.00409 * 179.78899 * 17 15 10 20 20 C 1.39288 * 120.00610 * 184.67256 * 19 17 15 21 21 C 1.39065 * 119.69050 * 185.43271 * 20 19 17 22 22 C 1.38358 * 119.11457 * 179.97438 * 21 20 19 23 23 C 1.38925 * 118.48331 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.35352 * 179.97438 * 23 22 21 25 25 C 1.38215 * 119.29318 * 359.97438 * 23 22 21 26 26 N 1.31917 * 120.83175 * 359.75054 * 25 23 22 27 27 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46699 * 59.99938 * 9 7 2 29 29 H 1.08996 * 109.47041 * 300.00144 * 9 7 2 30 30 H 1.08996 * 109.47256 * 25.24428 * 11 10 9 31 31 H 1.09007 * 109.47269 * 145.24020 * 11 10 9 32 32 H 1.08998 * 115.54801 * 29.32652 * 12 11 10 33 33 H 1.08997 * 117.49773 * 0.02562 * 13 12 11 34 34 H 1.09003 * 117.49378 * 145.01610 * 13 12 11 35 35 H 1.09000 * 117.49789 * 214.98181 * 14 12 11 36 36 H 1.09001 * 117.49860 * 0.02562 * 14 12 11 37 37 H 0.97000 * 120.00013 * 4.67952 * 19 17 15 38 38 H 1.08000 * 120.44373 * 359.96094 * 21 20 19 39 39 H 1.07998 * 120.75294 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.58452 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2127 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.5758 -4.2578 -1.2608 12 6 1.6915 -5.4858 -1.4864 13 6 2.3766 -6.8535 -1.5181 14 6 1.8457 -6.2335 -2.8122 15 6 2.7361 -4.0434 1.1611 16 8 3.4475 -5.0265 1.1741 17 6 2.4462 -3.3146 2.4322 18 8 1.7338 -2.3321 2.4193 19 7 2.9757 -3.7479 3.5933 20 6 2.6284 -3.1282 4.7914 21 6 3.2626 -3.5042 5.9705 22 6 2.9087 -2.8804 7.1537 23 6 1.9276 -1.8976 7.1169 24 17 1.4457 -1.0840 8.5727 25 6 1.3392 -1.5744 5.9087 26 7 1.7016 -2.1831 4.7959 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8902 30 1 2.4384 -3.5552 -2.0827 31 1 3.6205 -4.5655 -1.2167 32 1 0.6933 -5.4326 -1.0517 33 1 3.4573 -6.8784 -1.3779 34 1 1.8292 -7.7003 -1.1042 35 1 0.9490 -6.6724 -3.2497 36 1 2.5775 -5.8508 -3.5236 37 1 3.5987 -4.4913 3.5947 38 1 4.0210 -4.2730 5.9628 39 1 3.3845 -3.1514 8.0846 40 1 0.5762 -0.8107 5.8746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194088708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:30 Heat of formation + Delta-G solvation = 20.230424 kcal Electronic energy + Delta-G solvation = -26635.978050 eV Core-core repulsion = 22672.133070 eV Total energy + Delta-G solvation = -3963.844980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85809 -39.71605 -38.04548 -36.88730 -36.62889 -35.34762 -34.08732 -32.50231 -32.37783 -29.91651 -28.02317 -26.79159 -24.64830 -23.86554 -23.00124 -22.19940 -21.92294 -20.47822 -19.37480 -18.05409 -17.09039 -16.74617 -16.56236 -16.20255 -15.93845 -15.32509 -15.03838 -14.55942 -14.52057 -14.34924 -14.12670 -13.90288 -13.40679 -13.23554 -13.01893 -12.68513 -12.31919 -12.09089 -12.06024 -11.62632 -11.41937 -11.32429 -11.29045 -10.94563 -10.82754 -10.52939 -10.31437 -10.27012 -9.99160 -9.95400 -9.68627 -9.62084 -9.52411 -8.59994 -8.25728 -8.16224 -7.87987 -6.01203 -4.03141 0.87360 1.14045 2.00270 2.17610 2.68348 3.31675 3.39685 3.42266 3.61329 3.81368 4.01464 4.09320 4.42241 4.50071 4.66481 4.79749 4.82475 5.00459 5.07364 5.17628 5.26297 5.36463 5.49053 5.64833 5.66604 5.78507 5.79649 5.97516 6.07418 6.09410 6.12339 6.30576 6.46344 6.65342 6.68988 7.12892 7.36835 7.40594 7.86953 7.96022 8.10328 8.19582 8.38700 8.65781 8.96551 9.59702 11.07874 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009841 B = 0.003885 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.584051 B = 7205.779281 C = 9479.122077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.072 3.928 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.228 3.772 10 N -0.556 5.556 11 C 0.149 3.851 12 C -0.161 4.161 13 C -0.171 4.171 14 C -0.180 4.180 15 C 0.510 3.490 16 O -0.557 6.557 17 C 0.472 3.528 18 O -0.372 6.372 19 N -0.648 5.648 20 C 0.379 3.621 21 C -0.203 4.203 22 C -0.037 4.037 23 C -0.133 4.133 24 Cl -0.066 7.066 25 C 0.158 3.842 26 N -0.459 5.459 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.423 0.577 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -9.470 9.539 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.109 3.891 10 N -0.286 5.286 11 C 0.026 3.974 12 C -0.181 4.181 13 C -0.208 4.208 14 C -0.217 4.217 15 C 0.292 3.708 16 O -0.438 6.438 17 C 0.252 3.748 18 O -0.232 6.232 19 N -0.298 5.298 20 C 0.147 3.853 21 C -0.226 4.226 22 C -0.064 4.064 23 C -0.164 4.164 24 Cl -0.038 7.038 25 C -0.002 4.002 26 N -0.173 5.173 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.261 0.739 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.979 -8.801 8.653 12.968 hybrid contribution 1.083 0.533 0.962 1.544 sum 5.062 -8.269 9.615 13.655 Atomic orbital electron populations 1.69913 1.05887 1.26707 1.50137 1.24768 0.94706 0.98760 0.94812 0.86547 0.79984 0.83945 0.77511 1.20044 1.21082 1.20915 1.21195 0.92803 0.90260 1.51119 0.92845 1.19986 0.87453 0.81977 0.99647 1.48229 1.42539 1.33556 1.04237 1.21028 0.97569 0.92625 0.86148 1.22734 1.01101 0.93304 1.00921 1.22938 1.00699 0.96375 1.00740 1.22926 1.03159 1.04610 0.91054 1.19720 0.81642 0.84351 0.85127 1.90646 1.39793 1.26593 1.86784 1.20577 0.83274 0.86454 0.84528 1.91102 1.28268 1.19906 1.83945 1.43463 1.46840 1.35676 1.03780 1.18614 0.90676 0.90257 0.85712 1.21448 1.04620 1.05389 0.91192 1.21196 0.93926 0.92604 0.98638 1.21950 1.03421 1.01560 0.89448 1.98356 1.91185 1.78461 1.35787 1.22771 0.96314 0.96252 0.84851 1.67950 1.13385 1.07747 1.28245 0.92894 0.94806 0.91718 0.89193 0.90764 0.87761 0.88694 0.89474 0.89072 0.88843 0.73860 0.83755 0.83697 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.52 -13.95 7.81 -34.44 -0.27 -14.22 16 8 H 0.05 1.48 7.81 -52.49 -0.41 1.06 16 9 C 0.23 5.60 4.74 -5.20 -0.02 5.58 16 10 N -0.56 -11.58 2.48 -175.61 -0.44 -12.02 16 11 C 0.15 2.61 5.57 -4.04 -0.02 2.59 16 12 C -0.16 -2.48 5.98 -90.62 -0.54 -3.02 16 13 C -0.17 -2.28 10.18 -26.73 -0.27 -2.55 16 14 C -0.18 -2.23 10.25 -26.74 -0.27 -2.50 16 15 C 0.51 10.34 7.64 -11.63 -0.09 10.25 16 16 O -0.56 -10.95 16.20 5.49 0.09 -10.86 16 17 C 0.47 9.58 7.68 -11.63 -0.09 9.49 16 18 O -0.37 -8.96 10.42 5.48 0.06 -8.91 16 19 N -0.65 -10.36 5.37 -11.86 -0.06 -10.42 16 20 C 0.38 5.87 7.41 -154.79 -1.15 4.73 16 21 C -0.20 -2.27 9.94 -39.23 -0.39 -2.66 16 22 C -0.04 -0.39 9.97 -39.28 -0.39 -0.78 16 23 C -0.13 -1.62 6.34 -39.34 -0.25 -1.86 16 24 Cl -0.07 -0.71 28.99 -51.86 -1.50 -2.21 16 25 C 0.16 2.33 10.98 -17.52 -0.19 2.14 16 26 N -0.46 -8.26 7.91 -12.35 -0.10 -8.36 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.86 8.02 -51.93 -0.42 0.44 16 29 H 0.07 1.75 5.82 -51.93 -0.30 1.45 16 30 H 0.09 1.55 8.04 -51.93 -0.42 1.14 16 31 H 0.07 1.26 7.39 -51.93 -0.38 0.88 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.42 5.44 8.18 -40.82 -0.33 5.11 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -31.91 363.81 -9.58 -41.49 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.78 Total: 4.89 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -4.05 Total: 9.10 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.14 Total: -55.81 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.15 Total: -19.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.91 -9.58 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.719 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds