Wall clock time and date at job start Tue Mar 31 2020 21:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47258 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46769 * 299.99321 * 3 2 1 6 6 H 1.48498 * 109.47245 * 59.99298 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00220 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00297 * 263.84416 * 10 9 7 12 12 C 1.53001 * 109.47617 * 265.24121 * 11 10 9 13 13 C 1.53007 * 117.49786 * 243.62437 * 12 11 10 14 14 C 1.52991 * 117.50094 * 175.00123 * 12 11 10 15 15 C 1.34782 * 119.99598 * 83.84696 * 10 9 7 16 16 O 1.21357 * 119.99730 * 174.59813 * 15 10 9 17 17 C 1.49358 * 120.00258 * 354.87406 * 15 10 9 18 18 O 1.21365 * 119.99819 * 359.78508 * 17 15 10 19 19 N 1.34771 * 120.00409 * 179.78899 * 17 15 10 20 20 C 1.39288 * 120.00610 * 184.67256 * 19 17 15 21 21 C 1.39065 * 119.69050 * 185.43271 * 20 19 17 22 22 C 1.38358 * 119.11457 * 179.97438 * 21 20 19 23 23 C 1.38925 * 118.48331 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.35352 * 179.97438 * 23 22 21 25 25 C 1.38215 * 119.29318 * 359.97438 * 23 22 21 26 26 N 1.31917 * 120.83175 * 359.75054 * 25 23 22 27 27 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46699 * 59.99938 * 9 7 2 29 29 H 1.08996 * 109.47041 * 300.00144 * 9 7 2 30 30 H 1.08996 * 109.47256 * 25.24428 * 11 10 9 31 31 H 1.09007 * 109.47269 * 145.24020 * 11 10 9 32 32 H 1.08998 * 115.54801 * 29.32652 * 12 11 10 33 33 H 1.08997 * 117.49773 * 0.02562 * 13 12 11 34 34 H 1.09003 * 117.49378 * 145.01610 * 13 12 11 35 35 H 1.09000 * 117.49789 * 214.98181 * 14 12 11 36 36 H 1.09001 * 117.49860 * 0.02562 * 14 12 11 37 37 H 0.97000 * 120.00013 * 4.67952 * 19 17 15 38 38 H 1.08000 * 120.44373 * 359.96094 * 21 20 19 39 39 H 1.07998 * 120.75294 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.58452 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2127 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.5758 -4.2578 -1.2608 12 6 1.6915 -5.4858 -1.4864 13 6 2.3766 -6.8535 -1.5181 14 6 1.8457 -6.2335 -2.8122 15 6 2.7361 -4.0434 1.1611 16 8 3.4475 -5.0265 1.1741 17 6 2.4462 -3.3146 2.4322 18 8 1.7338 -2.3321 2.4193 19 7 2.9757 -3.7479 3.5933 20 6 2.6284 -3.1282 4.7914 21 6 3.2626 -3.5042 5.9705 22 6 2.9087 -2.8804 7.1537 23 6 1.9276 -1.8976 7.1169 24 17 1.4457 -1.0840 8.5727 25 6 1.3392 -1.5744 5.9087 26 7 1.7016 -2.1831 4.7959 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8902 30 1 2.4384 -3.5552 -2.0827 31 1 3.6205 -4.5655 -1.2167 32 1 0.6933 -5.4326 -1.0517 33 1 3.4573 -6.8784 -1.3779 34 1 1.8292 -7.7003 -1.1042 35 1 0.9490 -6.6724 -3.2497 36 1 2.5775 -5.8508 -3.5236 37 1 3.5987 -4.4913 3.5947 38 1 4.0210 -4.2730 5.9628 39 1 3.3845 -3.1514 8.0846 40 1 0.5762 -0.8107 5.8746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194088708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:30 Heat of formation + Delta-G solvation = 1.348821 kcal Electronic energy + Delta-G solvation = -26636.796818 eV Core-core repulsion = 22672.133070 eV Total energy + Delta-G solvation = -3964.663748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17692 -41.07919 -39.45093 -38.20617 -37.64385 -36.82048 -35.58203 -34.39690 -33.52201 -31.06852 -29.75719 -28.47296 -26.04192 -25.05877 -24.73638 -23.35122 -23.10423 -21.74768 -20.79215 -19.35631 -18.66936 -18.48147 -17.86484 -17.52363 -17.20930 -16.85677 -16.62608 -16.05680 -15.88178 -15.66567 -15.47565 -15.10396 -14.88156 -14.44828 -14.26604 -14.18889 -13.75999 -13.62272 -13.36881 -13.20920 -12.96941 -12.77507 -12.59326 -12.37281 -12.30641 -12.22584 -11.89211 -11.73198 -11.59228 -11.30218 -10.91897 -10.86151 -10.76603 -10.51893 -9.91690 -9.63315 -9.27594 -8.13920 -6.21722 -0.24400 0.17883 0.65789 1.01642 1.33600 1.35791 1.38883 1.47701 2.23017 2.36293 2.50454 2.74921 2.95781 3.20794 3.23990 3.58022 3.76541 3.83487 3.84226 3.95805 4.02790 4.13189 4.35667 4.56008 4.62574 4.67019 4.76197 4.83164 4.86576 4.88565 5.04262 5.04790 5.26769 5.30823 5.33320 5.48480 5.62789 5.75643 5.92277 6.10801 6.29904 6.66452 6.82380 7.01134 7.18790 7.44228 8.94830 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009841 B = 0.003885 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.584051 B = 7205.779281 C = 9479.122077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.044 0.956 9 C 0.251 3.749 10 N -0.563 5.563 11 C 0.148 3.852 12 C -0.187 4.187 13 C -0.163 4.163 14 C -0.156 4.156 15 C 0.507 3.493 16 O -0.549 6.549 17 C 0.473 3.527 18 O -0.423 6.423 19 N -0.634 5.634 20 C 0.345 3.655 21 C -0.175 4.175 22 C -0.029 4.029 23 C -0.122 4.122 24 Cl -0.050 7.050 25 C 0.131 3.869 26 N -0.511 5.511 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.437 0.563 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 -10.824 10.789 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.131 3.869 10 N -0.292 5.292 11 C 0.026 3.974 12 C -0.207 4.207 13 C -0.200 4.200 14 C -0.193 4.193 15 C 0.290 3.710 16 O -0.430 6.430 17 C 0.252 3.748 18 O -0.287 6.287 19 N -0.285 5.285 20 C 0.114 3.886 21 C -0.198 4.198 22 C -0.055 4.055 23 C -0.152 4.152 24 Cl -0.022 7.022 25 C -0.027 4.027 26 N -0.226 5.226 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.278 0.722 38 H 0.204 0.796 39 H 0.205 0.795 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.064 -10.198 9.934 15.474 hybrid contribution 0.478 0.880 0.745 1.247 sum 6.542 -9.318 10.679 15.610 Atomic orbital electron populations 1.70016 1.07151 1.27411 1.51460 1.25487 0.95450 1.01851 0.94771 0.85655 0.78862 0.80354 0.77605 1.19688 1.19712 1.21347 1.21354 0.92340 0.91467 1.50177 0.93780 1.19414 0.87491 0.82512 0.97514 1.48156 1.42229 1.33073 1.05771 1.21171 0.98336 0.93296 0.84560 1.22559 1.00188 0.93585 1.04341 1.22991 1.00656 0.95100 1.01289 1.23046 1.03839 1.02240 0.90162 1.19846 0.81529 0.84445 0.85216 1.90627 1.39431 1.26162 1.86777 1.20653 0.82734 0.85849 0.85543 1.91087 1.30775 1.22055 1.84772 1.43199 1.46425 1.35813 1.03057 1.18932 0.91968 0.91140 0.86518 1.21845 1.03659 1.04930 0.89392 1.21691 0.92757 0.91076 0.99942 1.22021 1.02842 1.01295 0.89061 1.98366 1.91119 1.78257 1.34417 1.22751 0.97467 0.97025 0.85485 1.67721 1.15166 1.09354 1.30393 0.92860 0.96215 0.94365 0.89578 0.90111 0.89488 0.88635 0.88503 0.87452 0.87478 0.72160 0.79559 0.79508 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.26 13.29 21.45 0.28 -54.97 16 2 C 0.02 1.37 5.46 84.65 0.46 1.83 16 3 Si 0.95 45.75 29.54 68.60 2.03 47.78 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.51 -28.86 7.81 25.60 0.20 -28.66 16 8 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 9 C 0.25 12.98 4.74 85.63 0.41 13.38 16 10 N -0.56 -24.21 2.48 -827.86 -2.06 -26.26 16 11 C 0.15 5.24 5.57 86.38 0.48 5.72 16 12 C -0.19 -5.71 5.98 -10.79 -0.06 -5.77 16 13 C -0.16 -4.10 10.18 30.60 0.31 -3.78 16 14 C -0.16 -3.54 10.25 30.59 0.31 -3.23 16 15 C 0.51 20.99 7.64 87.24 0.67 21.66 16 16 O -0.55 -21.31 16.20 -3.27 -0.05 -21.36 16 17 C 0.47 19.81 7.68 87.24 0.67 20.48 16 18 O -0.42 -21.52 10.42 -3.29 -0.03 -21.56 16 19 N -0.63 -20.16 5.37 -309.79 -1.66 -21.83 16 20 C 0.35 10.52 7.41 132.96 0.98 11.50 16 21 C -0.18 -3.38 9.94 22.50 0.22 -3.16 16 22 C -0.03 -0.49 9.97 22.46 0.22 -0.27 16 23 C -0.12 -2.76 6.34 22.43 0.14 -2.62 16 24 Cl -0.05 -0.98 28.99 -2.72 -0.08 -1.06 16 25 C 0.13 3.98 10.98 84.67 0.93 4.91 16 26 N -0.51 -19.06 7.91 -193.00 -1.53 -20.58 16 27 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.02 1.06 8.02 -2.38 -0.02 1.05 16 29 H 0.04 2.22 5.82 -2.39 -0.01 2.20 16 30 H 0.09 3.04 8.04 -2.39 -0.02 3.02 16 31 H 0.08 2.71 7.39 -2.38 -0.02 2.69 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.10 2.39 8.03 -2.39 -0.02 2.38 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.44 10.68 8.18 -92.71 -0.76 9.92 16 38 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.16 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -72.52 363.81 3.18 -69.34 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.33 Total: 18.51 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 5.95 Total: 32.00 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -4.96 Total: -123.65 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.09 Total: -42.92 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -72.52 3.18 -69.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.686 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds