Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48509 * 109.47251 * 240.00115 * 3 2 1 5 5 H 1.48499 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47154 * 120.00712 * 3 2 1 7 7 C 1.39218 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00542 * 177.83429 * 7 2 1 9 9 N 1.36633 * 119.99688 * 357.82995 * 7 2 1 10 10 C 1.34774 * 120.00254 * 48.67148 * 9 7 2 11 11 O 1.21569 * 119.99856 * 5.59431 * 10 9 7 12 12 C 1.48011 * 120.00026 * 185.59117 * 10 9 7 13 13 N 1.32877 * 119.59659 * 5.84630 * 12 10 9 14 14 C 1.31333 * 121.80372 * 179.74921 * 13 12 10 15 15 C 1.39828 * 120.76391 * 0.53048 * 14 13 12 16 16 C 1.47933 * 120.44327 * 179.76596 * 15 14 13 17 17 N 1.34771 * 120.00482 * 359.97438 * 16 15 14 18 18 O 1.21541 * 119.99563 * 179.97438 * 16 15 14 19 19 C 1.39863 * 119.10926 * 359.74112 * 15 14 13 20 20 C 1.38565 * 118.35489 * 0.02562 * 19 15 14 21 21 Cl 1.73602 * 120.42108 * 179.97438 * 20 19 15 22 22 C 1.46508 * 119.99814 * 228.67497 * 9 7 2 23 23 C 1.55233 * 110.58188 * 94.79048 * 22 9 7 24 24 C 1.54888 * 102.58828 * 203.33847 * 23 22 9 25 25 C 1.54265 * 104.31092 * 37.92950 * 24 23 22 26 26 C 1.53878 * 106.60359 * 336.32520 * 25 24 23 27 27 H 0.96992 * 120.00005 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.61879 * 180.25360 * 14 13 12 29 29 H 0.97006 * 119.99841 * 359.97438 * 17 16 15 30 30 H 0.96995 * 120.00337 * 180.02562 * 17 16 15 31 31 H 1.08001 * 120.82200 * 180.02562 * 19 15 14 32 32 H 1.08999 * 110.43059 * 217.37927 * 22 9 7 33 33 H 1.09003 * 110.89776 * 85.04551 * 23 22 9 34 34 H 1.09001 * 110.76380 * 321.56822 * 23 22 9 35 35 H 1.09003 * 110.48342 * 279.18951 * 24 23 22 36 36 H 1.08999 * 110.48802 * 156.67586 * 24 23 22 37 37 H 1.09004 * 110.03086 * 95.61279 * 25 24 23 38 38 H 1.09005 * 110.03543 * 216.99081 * 25 24 23 39 39 H 1.09001 * 110.03249 * 119.28329 * 26 25 24 40 40 H 1.08993 * 110.03360 * 240.66604 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 3.1002 1.6965 -1.2126 5 1 1.2814 2.7465 0.0006 6 1 3.1003 1.6964 1.2124 7 6 2.0087 -1.2056 -0.0005 8 1 3.0881 -1.2060 -0.0359 9 7 1.3263 -2.3885 0.0437 10 6 0.2937 -2.6027 -0.7955 11 8 0.0332 -1.7877 -1.6591 12 6 -0.5232 -3.8301 -0.6657 13 7 -0.3068 -4.6579 0.3509 14 6 -1.0090 -5.7562 0.5107 15 6 -2.0126 -6.1022 -0.3994 16 6 -2.7958 -7.3437 -0.2154 17 7 -2.5438 -8.1501 0.8345 18 8 -3.6666 -7.6363 -1.0113 19 6 -2.2664 -5.2586 -1.4857 20 6 -1.5069 -4.1070 -1.6161 21 17 -1.7760 -3.0221 -2.9443 22 6 1.7170 -3.4241 1.0036 23 6 0.8637 -3.3200 2.2962 24 6 1.7647 -4.0079 3.3517 25 6 3.1948 -3.5665 2.9782 26 6 3.1646 -3.1953 1.4852 27 1 -0.4850 0.8400 0.0004 28 1 -0.8060 -6.4018 1.3523 29 1 -1.8485 -7.9167 1.4695 30 1 -3.0571 -8.9643 0.9549 31 1 -3.0352 -5.4988 -2.2051 32 1 1.6152 -4.4137 0.5582 33 1 -0.0786 -3.8563 2.1842 34 1 0.6871 -2.2772 2.5597 35 1 1.6705 -5.0918 3.2855 36 1 1.5088 -3.6641 4.3540 37 1 3.4854 -2.7001 3.5725 38 1 3.8943 -4.3855 3.1459 39 1 3.4405 -2.1488 1.3549 40 1 3.8497 -3.8338 0.9277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323377607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = -1.981376 kcal Electronic energy + Delta-G solvation = -27804.877508 eV Core-core repulsion = 23840.069352 eV Total energy + Delta-G solvation = -3964.808156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60177 -39.22094 -38.04643 -36.60492 -35.93710 -33.99857 -33.46658 -32.54504 -31.49441 -30.62308 -28.06942 -26.73075 -25.93517 -24.15654 -23.39072 -21.27273 -20.41920 -19.60943 -19.54621 -18.28161 -17.54791 -16.88537 -16.07588 -15.95790 -15.30210 -15.14206 -15.07274 -14.89418 -14.26716 -14.16176 -13.77428 -13.62719 -13.22309 -13.07155 -12.69418 -12.52824 -12.22675 -11.59804 -11.55011 -11.11220 -10.98574 -10.89211 -10.73685 -10.51697 -10.47491 -10.39064 -10.35320 -10.19797 -9.96565 -9.91676 -9.73120 -9.31564 -9.04522 -8.81633 -8.59719 -7.90189 -7.07756 -6.17379 -3.97332 0.50467 1.24042 2.54244 2.70011 3.24611 3.29623 3.29925 3.33567 3.67915 4.12471 4.34329 4.64355 4.73685 4.76946 4.84026 5.10374 5.19904 5.24363 5.35385 5.43936 5.48762 5.69861 5.89438 6.08661 6.11177 6.19823 6.27093 6.28817 6.40090 6.51584 6.54338 6.56146 6.59985 6.80582 6.99579 7.09950 7.14411 7.28854 7.49580 7.88132 8.06587 8.17645 8.95413 9.10310 9.52173 10.26085 10.83936 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.005115 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.628780 B = 5472.779550 C = 7365.978203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.054 3.946 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.315 4.315 8 H 0.087 0.913 9 N -0.421 5.421 10 C 0.497 3.503 11 O -0.497 6.497 12 C 0.149 3.851 13 N -0.442 5.442 14 C 0.124 3.876 15 C -0.202 4.202 16 C 0.576 3.424 17 N -0.851 5.851 18 O -0.542 6.542 19 C -0.018 4.018 20 C -0.065 4.065 21 Cl -0.013 7.013 22 C 0.143 3.857 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.140 4.140 27 H 0.267 0.733 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.405 0.595 31 H 0.152 0.848 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -12.715 5.632 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.158 4.158 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.443 4.443 8 H 0.104 0.896 9 N -0.141 5.141 10 C 0.284 3.716 11 O -0.372 6.372 12 C 0.010 3.990 13 N -0.155 5.155 14 C -0.037 4.037 15 C -0.208 4.208 16 C 0.361 3.639 17 N -0.415 5.415 18 O -0.420 6.420 19 C -0.045 4.045 20 C -0.096 4.096 21 Cl 0.016 6.984 22 C 0.038 3.962 23 C -0.159 4.159 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.178 4.178 27 H 0.078 0.922 28 H 0.176 0.824 29 H 0.231 0.769 30 H 0.236 0.764 31 H 0.170 0.830 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.416 -11.812 5.000 12.833 hybrid contribution -0.295 0.330 -0.041 0.444 sum -0.711 -11.482 4.958 12.527 Atomic orbital electron populations 1.69852 1.06296 1.27552 1.40381 1.25513 0.95144 0.99504 0.95682 0.86225 0.79257 0.81674 0.78729 1.19860 1.21017 1.20000 1.19036 0.91184 0.81924 1.52109 0.89586 1.43143 1.28913 1.13738 1.28300 1.17380 0.85105 0.84471 0.84647 1.90724 1.68995 1.43715 1.33798 1.22511 0.92518 0.95867 0.88089 1.68660 1.24531 1.03071 1.19197 1.23079 0.90200 0.93827 0.96593 1.20733 1.02244 0.98077 0.99762 1.18036 0.82224 0.82918 0.80687 1.43699 1.41879 1.27070 1.28832 1.90809 1.32972 1.74191 1.43981 1.21517 0.96541 0.90375 0.96047 1.21840 0.98831 0.94134 0.94765 1.98410 1.95074 1.62267 1.42666 1.22105 0.92224 0.92119 0.89717 1.22901 0.98500 1.00419 0.94053 1.22275 0.95595 0.99445 0.98537 1.22044 0.96677 0.99836 0.96964 1.22562 0.97059 1.03811 0.94340 0.92248 0.82429 0.76860 0.76403 0.83029 0.89867 0.90912 0.91725 0.92550 0.92912 0.92495 0.93117 0.88851 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.65 10.96 55.51 0.61 -22.04 16 2 C 0.05 1.41 4.99 -17.44 -0.09 1.32 16 3 Si 0.91 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.01 7.76 -15.05 -0.12 -8.13 16 8 H 0.09 2.09 6.37 -52.49 -0.33 1.76 16 9 N -0.42 -10.06 2.58 -106.79 -0.28 -10.34 16 10 C 0.50 12.38 6.70 -12.25 -0.08 12.30 16 11 O -0.50 -13.87 11.69 5.30 0.06 -13.81 16 12 C 0.15 3.07 6.59 -82.92 -0.55 2.52 16 13 N -0.44 -7.57 3.82 -9.48 -0.04 -7.60 16 14 C 0.12 1.62 10.66 -17.17 -0.18 1.44 16 15 C -0.20 -2.79 5.90 -104.72 -0.62 -3.40 16 16 C 0.58 7.24 8.05 -12.29 -0.10 7.14 16 17 N -0.85 -6.46 8.83 30.55 0.27 -6.19 16 18 O -0.54 -8.78 17.24 5.33 0.09 -8.69 16 19 C -0.02 -0.29 9.51 -38.85 -0.37 -0.66 16 20 C -0.06 -1.24 6.37 -38.97 -0.25 -1.49 16 21 Cl -0.01 -0.27 26.02 -51.86 -1.35 -1.62 16 22 C 0.14 2.77 2.48 -66.08 -0.16 2.60 16 23 C -0.12 -2.16 6.11 -24.55 -0.15 -2.31 16 24 C -0.12 -1.71 6.82 -25.07 -0.17 -1.88 16 25 C -0.12 -1.70 6.80 -25.61 -0.17 -1.87 16 26 C -0.14 -2.43 6.14 -25.61 -0.16 -2.59 16 27 H 0.27 7.24 8.30 -40.82 -0.34 6.90 16 28 H 0.16 1.31 6.41 -52.49 -0.34 0.97 16 29 H 0.40 1.97 6.89 -40.82 -0.28 1.68 16 30 H 0.40 2.42 8.93 -40.82 -0.36 2.05 16 31 H 0.15 2.27 7.72 -52.49 -0.41 1.86 16 32 H 0.08 1.55 5.97 -51.93 -0.31 1.24 16 33 H 0.07 1.28 5.86 -51.93 -0.30 0.97 16 34 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.82 5.33 -51.93 -0.28 1.54 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -32.56 337.55 -8.02 -40.58 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.28 Total: 4.23 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -3.17 Total: 4.99 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.57 Total: -46.17 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.15 Total: -22.50 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.35 Total: -1.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.56 -8.02 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323377607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.594 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds