Wall clock time and date at job start Tue Mar 31 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36833 * 125.06632 * 2 1 4 4 C 1.34239 * 109.92739 * 180.18822 * 3 2 1 5 5 C 1.46483 * 107.00057 * 359.57332 * 4 3 2 6 6 C 1.39628 * 134.03174 * 180.28789 * 5 4 3 7 7 C 1.36632 * 119.76484 * 179.97438 * 6 5 4 8 8 C 1.38827 * 120.52305 * 0.02562 * 7 6 5 9 9 C 1.37744 * 120.67521 * 0.02562 * 8 7 6 10 10 S 1.76198 * 120.11468 * 180.02562 * 9 8 7 11 11 O 1.42094 * 106.40090 * 359.87221 * 10 9 8 12 12 O 1.42103 * 106.40126 * 132.79390 * 10 9 8 13 13 N 1.65599 * 107.21719 * 246.32999 * 10 9 8 14 14 C 1.46498 * 119.99961 * 61.75000 * 13 10 9 15 15 C 1.50703 * 109.47508 * 163.35473 * 14 13 10 16 16 O 1.21296 * 119.99153 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00284 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99768 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00518 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00135 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99604 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48512 * 109.46924 * 60.00230 * 22 20 18 24 24 H 1.48498 * 109.47204 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47298 * 300.00291 * 22 20 18 26 26 C 1.37692 * 125.05941 * 179.70430 * 2 1 3 27 27 H 1.09000 * 109.46748 * 264.16606 * 1 2 3 28 28 H 1.09008 * 109.46826 * 24.16190 * 1 2 3 29 29 H 1.08995 * 109.47439 * 144.16713 * 1 2 3 30 30 H 1.07992 * 125.03647 * 0.04483 * 3 2 1 31 31 H 1.08001 * 126.50053 * 179.83518 * 4 3 2 32 32 H 1.07998 * 120.12124 * 359.95108 * 6 5 4 33 33 H 1.07996 * 119.73356 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.66080 * 180.02562 * 8 7 6 35 35 H 0.97001 * 120.00287 * 241.74893 * 13 10 9 36 36 H 1.09006 * 109.47215 * 283.35690 * 14 13 10 37 37 H 1.09000 * 109.47307 * 43.35464 * 14 13 10 38 38 H 0.96996 * 120.00289 * 359.97438 * 17 15 14 39 39 H 0.96998 * 119.99856 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7694 -0.0041 5 6 3.5945 -0.6947 0.0034 6 6 4.6294 -1.6320 0.0086 7 6 4.3359 -2.9664 0.0159 8 6 3.0165 -3.3981 0.0176 9 6 1.9802 -2.4907 0.0115 10 16 0.3110 -3.0551 0.0144 11 8 0.3675 -4.4749 0.0204 12 8 -0.3661 -2.2999 1.0097 13 7 -0.3562 -2.6196 -1.4373 14 6 0.1973 -3.1492 -2.6861 15 6 -0.7974 -2.9505 -3.8006 16 8 -1.8639 -2.4191 -3.5739 17 7 -0.5023 -3.3641 -5.0489 18 6 -1.4070 -3.1827 -6.0629 19 1 -2.3563 -2.7089 -5.8614 20 6 -1.1026 -3.6086 -7.3501 21 7 0.0528 -4.1847 -7.5955 22 14 -2.3355 -3.3622 -8.7315 23 1 -2.6177 -1.9128 -8.8905 24 1 -1.7743 -3.8985 -9.9974 25 1 -3.5946 -4.0786 -8.4050 26 6 2.2559 -1.1271 0.0058 27 1 -0.3633 -0.1045 1.0224 28 1 -0.3633 0.9377 -0.4207 29 1 -0.3634 -0.8331 -0.6016 30 1 1.8835 2.1354 0.0007 31 1 4.3937 1.4396 -0.0077 32 1 5.6582 -1.3035 0.0065 33 1 5.1367 -3.6909 0.0203 34 1 2.8004 -4.4563 0.0238 35 1 -1.1135 -2.0139 -1.4609 36 1 1.1215 -2.6233 -2.9258 37 1 0.4044 -4.2130 -2.5694 38 1 0.3504 -3.7893 -5.2301 39 1 0.2651 -4.4824 -8.4939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663227333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:30 Heat of formation + Delta-G solvation = -53.154255 kcal Electronic energy + Delta-G solvation = -27112.144870 eV Core-core repulsion = 23147.161398 eV Total energy + Delta-G solvation = -3964.983472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37766 -40.30416 -38.72839 -37.96461 -37.11984 -36.45389 -35.57256 -33.91186 -33.34842 -31.61342 -30.02756 -28.88623 -27.29315 -26.20771 -24.22412 -22.82383 -21.87456 -21.44164 -20.45311 -20.09150 -19.08952 -18.66991 -17.78723 -17.53980 -17.31374 -17.06077 -16.52833 -16.40643 -16.16610 -15.99856 -15.92740 -15.41463 -15.01028 -14.32054 -14.28965 -14.00216 -13.91191 -13.84666 -13.63415 -13.52442 -13.43504 -13.23876 -13.20659 -12.92183 -12.73539 -12.61259 -12.46070 -12.36176 -12.13132 -11.66015 -11.55655 -10.97151 -10.76650 -10.46707 -10.08211 -9.28039 -8.88091 -8.50116 -5.99869 -0.80549 -0.32695 0.54316 1.38230 1.42903 1.53153 1.60890 1.74995 1.82910 1.92319 2.28649 2.48450 2.74030 3.02830 3.16754 3.29992 3.63501 3.69254 3.88011 3.94421 4.00900 4.27234 4.32236 4.35882 4.37113 4.37576 4.57755 4.64197 4.75017 4.75651 4.83959 4.97349 5.19185 5.38771 5.42353 5.64428 5.74493 5.76517 5.94893 6.08853 6.24651 6.50429 7.05303 7.45542 7.97478 8.66493 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.003351 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.476588 B = 8353.284693 C = 8537.242887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.488 5.488 3 C 0.045 3.955 4 C -0.201 4.201 5 C -0.151 4.151 6 C -0.007 4.007 7 C -0.174 4.174 8 C 0.000 4.000 9 C -0.695 4.695 10 S 2.707 3.293 11 O -0.983 6.983 12 O -0.978 6.978 13 N -1.103 6.103 14 C 0.117 3.883 15 C 0.435 3.565 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.339 4.339 19 H 0.084 0.916 20 C -0.008 4.008 21 N -0.914 5.914 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.147 3.853 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.207 0.793 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.424 0.576 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.400 0.600 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.118 7.875 14.457 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.170 5.170 3 C -0.078 4.078 4 C -0.225 4.225 5 C -0.157 4.157 6 C -0.025 4.025 7 C -0.194 4.194 8 C -0.020 4.020 9 C -0.789 4.789 10 S 2.801 3.199 11 O -0.973 6.973 12 O -0.968 6.968 13 N -0.867 5.867 14 C -0.013 4.013 15 C 0.221 3.779 16 O -0.511 6.511 17 N -0.196 5.196 18 C -0.468 4.468 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.554 5.554 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 C 0.035 3.965 27 H 0.112 0.888 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.223 0.777 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.183 0.817 34 H 0.172 0.828 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.235 0.765 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.819 7.618 15.065 20.052 hybrid contribution -0.219 0.267 -1.132 1.183 sum 10.601 7.886 13.934 19.202 Atomic orbital electron populations 1.22851 0.76153 1.05565 1.04971 1.44291 1.06770 1.04549 1.61420 1.22578 0.90367 0.92000 1.02883 1.22096 0.97125 0.91873 1.11377 1.19754 0.91894 0.95364 1.08682 1.21052 0.99403 0.91920 0.90120 1.21162 0.96327 0.96697 1.05184 1.21129 0.92407 0.99224 0.89283 1.29300 1.23080 0.98622 1.27877 1.01128 0.74035 0.72914 0.71787 1.93519 1.87377 1.30075 1.86320 1.93586 1.74126 1.72293 1.56794 1.55410 1.46673 1.63835 1.20799 1.20894 0.95862 1.01627 0.82920 1.20427 0.89071 0.84059 0.84362 1.90472 1.27402 1.49936 1.83304 1.41844 1.18609 1.52525 1.06667 1.19676 0.99756 1.39182 0.88202 0.89832 1.26061 0.98884 0.95591 1.00307 1.69660 1.22707 1.39404 1.23646 0.84974 0.77757 0.78784 0.76745 1.19555 1.19499 1.19753 1.17701 0.92071 0.86763 0.99916 0.88824 0.86594 0.91831 0.77655 0.80430 0.81956 0.81698 0.82850 0.73534 0.87570 0.87027 0.76549 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 9.11 127.77 1.16 2.24 16 2 N -0.49 -11.85 3.18 -539.28 -1.71 -13.56 16 3 C 0.04 0.82 11.27 83.00 0.94 1.76 16 4 C -0.20 -3.68 11.08 23.51 0.26 -3.42 16 5 C -0.15 -3.48 6.37 -20.20 -0.13 -3.61 16 6 C -0.01 -0.12 10.05 22.23 0.22 0.10 16 7 C -0.17 -3.16 9.97 22.03 0.22 -2.94 16 8 C 0.00 0.00 9.53 22.29 0.21 0.21 16 9 C -0.69 -19.10 5.84 22.37 0.13 -18.97 16 10 S 2.71 83.20 4.96 -56.49 -0.28 82.92 16 11 O -0.98 -34.24 16.52 -128.00 -2.11 -36.36 16 12 O -0.98 -32.07 14.29 -128.00 -1.83 -33.90 16 13 N -1.10 -35.49 4.70 -190.78 -0.90 -36.39 16 14 C 0.12 3.97 6.67 85.63 0.57 4.54 16 15 C 0.43 19.87 7.85 87.66 0.69 20.55 16 16 O -0.62 -32.51 15.32 -3.08 -0.05 -32.56 16 17 N -0.56 -27.69 5.29 -306.98 -1.62 -29.31 16 18 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 21 N -0.91 -47.72 13.05 21.67 0.28 -47.44 16 22 Si 0.99 41.50 29.55 68.60 2.03 43.53 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.15 3.97 6.70 39.03 0.26 4.23 16 27 H 0.09 2.24 7.04 -2.39 -0.02 2.22 16 28 H 0.12 1.95 8.11 -2.38 -0.02 1.93 16 29 H 0.06 1.67 2.94 -2.40 -0.01 1.66 16 30 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.15 3.22 7.31 -2.91 -0.02 3.20 16 35 H 0.42 13.97 6.16 -96.74 -0.60 13.37 16 36 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.11 3.47 7.80 -2.39 -0.02 3.45 16 38 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 39 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -74.17 340.92 -0.57 -74.74 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.19 Total: 41.29 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.82 Total: -12.96 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -3.95 Total: -126.70 kcal Atomic # 8 Polarization: -98.83 SS G_CDS: -3.99 Total: -102.82 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 83.20 SS G_CDS: -0.28 Total: 82.92 kcal Total: -74.17 -0.57 -74.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663227333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.591 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds