Wall clock time and date at job start Tue Mar 31 2020 20:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34704 * 117.00250 * 2 1 4 4 O 1.21477 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.47736 * 120.00493 * 179.97438 * 3 2 1 6 6 C 1.39370 * 120.07755 * 179.97438 * 5 3 2 7 7 C 1.39338 * 119.69623 * 179.74437 * 6 5 3 8 8 C 1.47744 * 120.07620 * 180.27838 * 7 6 5 9 9 O 1.21470 * 120.00022 * 359.97438 * 8 7 6 10 10 O 1.34714 * 119.99852 * 180.02562 * 8 7 6 11 11 C 1.45195 * 116.99606 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46893 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46979 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99748 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00274 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47353 * 119.99802 * 18 16 14 21 21 H 1.48503 * 109.47120 * 240.00338 * 18 16 14 22 22 C 1.39767 * 119.84618 * 0.25770 * 7 6 5 23 23 C 1.38042 * 120.14996 * 359.97438 * 22 7 6 24 24 N 1.48025 * 119.84547 * 180.02562 * 23 22 7 25 25 O 1.21799 * 119.99983 * 359.97438 * 24 23 22 26 26 O 1.21798 * 120.00237 * 180.02562 * 24 23 22 27 27 C 1.38090 * 120.31228 * 0.02562 * 23 22 7 28 28 H 1.09001 * 109.46950 * 60.00956 * 1 2 3 29 29 H 1.09009 * 109.46971 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47457 * 300.00694 * 1 2 3 31 31 H 1.08002 * 120.15475 * 0.02737 * 6 5 3 32 32 H 1.08996 * 109.47548 * 299.99928 * 11 10 8 33 33 H 1.09005 * 109.46931 * 60.00507 * 11 10 8 34 34 H 1.09004 * 109.46734 * 299.99952 * 12 11 10 35 35 H 1.08997 * 109.47154 * 60.00175 * 12 11 10 36 36 H 1.09004 * 109.46805 * 299.99310 * 13 12 11 37 37 H 1.08997 * 109.47470 * 59.99769 * 13 12 11 38 38 H 0.97002 * 119.99578 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.91850 * 180.02562 * 22 7 6 40 40 H 1.08002 * 119.92720 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1733 2.5185 0.0000 7 6 5.5652 2.5823 0.0060 8 6 6.2464 3.8933 0.0117 9 8 5.5929 4.9173 0.0107 10 8 7.5922 3.9531 0.0169 11 6 8.1932 5.2748 0.0217 12 6 9.7174 5.1419 0.0266 13 6 10.3507 6.5347 0.0324 14 6 11.8521 6.4037 0.0365 15 1 12.3088 5.4251 0.0356 16 6 12.6426 7.5334 0.0415 17 7 12.0864 8.7252 0.0421 18 14 14.5035 7.3712 0.0474 19 1 14.8750 5.9333 0.0451 20 1 15.0615 8.0280 -1.1619 21 1 15.0534 8.0231 1.2631 22 6 6.3155 1.4031 0.0070 23 6 5.6806 0.1773 0.0026 24 7 6.4819 -1.0673 0.0043 25 8 7.6985 -1.0084 0.0090 26 8 5.9247 -2.1504 0.0000 27 6 4.3016 0.1067 -0.0033 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.5887 3.4267 -0.0004 32 1 7.8793 5.8200 -0.8683 33 1 7.8725 5.8165 0.9116 34 1 10.0317 4.5966 0.9166 35 1 10.0377 4.6004 -0.8634 36 1 10.0365 7.0803 -0.8574 37 1 10.0304 7.0759 0.9226 38 1 12.6425 9.5199 0.0459 39 1 7.3944 1.4511 0.0120 40 1 3.8113 -0.8556 -0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025394293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:20 Heat of formation + Delta-G solvation = -152.524999 kcal Electronic energy + Delta-G solvation = -27398.638145 eV Core-core repulsion = 22954.300012 eV Total energy + Delta-G solvation = -4444.338133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.66526 -41.43009 -40.69694 -39.31272 -37.15375 -36.97557 -36.78168 -34.13680 -33.00128 -32.86748 -31.71569 -28.52933 -27.39578 -27.09384 -25.46804 -24.74994 -23.10691 -22.11186 -21.20121 -20.50028 -19.54611 -19.18614 -18.26309 -17.96574 -17.82411 -17.39485 -17.07394 -16.98729 -16.69973 -16.62202 -16.11506 -15.71230 -14.56263 -14.50404 -14.46679 -14.10464 -13.65443 -13.45224 -13.14575 -13.05714 -12.73518 -12.34295 -12.28270 -12.02672 -11.95312 -11.73310 -11.50170 -11.47585 -11.35807 -11.04941 -10.98026 -10.76383 -10.59584 -10.58134 -10.50575 -10.28953 -9.84014 -9.60590 -9.21202 -8.43767 -6.08336 -4.11549 -0.80966 -0.55605 0.50436 0.78839 1.46666 1.76390 2.11173 2.35305 2.75727 3.27751 3.35524 3.39727 3.48517 3.62740 3.84962 3.94921 4.10960 4.23507 4.39988 4.51600 4.56735 4.61875 4.77471 4.94435 5.02015 5.14139 5.27581 5.27963 5.41263 5.41512 5.58254 5.84732 5.86999 6.17143 6.42107 6.63433 6.87346 6.92572 7.18808 7.46253 7.53677 7.62951 7.89564 8.29715 8.94888 9.53326 11.03038 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002096 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.168200 B =13354.312894 C =15050.414967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.516 3.484 4 O -0.486 6.486 5 C -0.132 4.132 6 C 0.050 3.950 7 C -0.119 4.119 8 C 0.507 3.493 9 O -0.490 6.490 10 O -0.349 6.349 11 C 0.069 3.931 12 C -0.110 4.110 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.032 3.968 23 C -0.065 4.065 24 N 0.027 4.973 25 O -0.139 6.139 26 O -0.150 6.150 27 C 0.026 3.974 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.174 0.826 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.181 0.819 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 -20.185 -0.107 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.359 3.641 4 O -0.374 6.374 5 C -0.134 4.134 6 C 0.032 3.968 7 C -0.121 4.121 8 C 0.350 3.650 9 O -0.378 6.378 10 O -0.265 6.265 11 C -0.003 4.003 12 C -0.148 4.148 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.013 3.987 23 C -0.148 4.148 24 N 0.550 4.450 25 O -0.358 6.358 26 O -0.367 6.367 27 C 0.007 3.993 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.192 0.808 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.199 0.801 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.959 -18.760 -0.106 30.430 hybrid contribution 0.995 -0.063 0.001 0.997 sum -22.963 -18.823 -0.105 29.693 Atomic orbital electron populations 1.23416 0.74633 1.04441 1.03151 1.86517 1.24584 1.31661 1.84050 1.20552 0.87913 0.82170 0.73491 1.90929 1.66065 1.35814 1.44555 1.18800 0.90630 0.92886 1.11038 1.21843 0.92998 0.98659 0.83283 1.19049 0.92682 0.91552 1.08818 1.20463 0.82419 0.88045 0.74084 1.90903 1.66721 1.35449 1.44777 1.86534 1.19317 1.37842 1.82793 1.23702 0.95390 0.78521 1.02698 1.21815 0.88160 1.02516 1.02288 1.19062 0.95431 0.89069 0.97762 1.21195 0.91029 0.92747 1.51050 0.92278 1.25036 0.99013 0.95320 0.95129 1.69974 1.35375 0.97455 1.50508 0.86482 0.85320 0.78274 0.77622 1.19603 1.20965 1.20959 1.21729 1.03918 0.88520 0.84497 1.20876 0.91601 0.85503 1.16796 1.43397 1.01492 1.02101 0.98013 1.94632 0.94795 1.93818 1.52522 1.94567 1.74038 1.14925 1.53155 1.21536 0.90749 1.01070 0.85944 0.91322 0.87340 0.91327 0.80829 0.90953 0.90949 0.91879 0.91873 0.96168 0.96166 0.92907 0.80140 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 10.56 101.05 1.07 1.21 16 2 O -0.35 -2.21 9.81 -40.50 -0.40 -2.61 16 3 C 0.52 4.11 7.90 34.61 0.27 4.38 16 4 O -0.49 -5.11 16.13 -19.25 -0.31 -5.42 16 5 C -0.13 -0.97 5.87 -105.04 -0.62 -1.58 16 6 C 0.05 0.43 9.14 -38.75 -0.35 0.07 16 7 C -0.12 -1.14 5.87 -105.03 -0.62 -1.75 16 8 C 0.51 6.60 7.90 34.62 0.27 6.87 16 9 O -0.49 -7.59 16.13 -19.24 -0.31 -7.90 16 10 O -0.35 -5.00 9.46 -40.53 -0.38 -5.38 16 11 C 0.07 1.15 5.47 37.16 0.20 1.35 16 12 C -0.11 -2.13 5.53 -26.73 -0.15 -2.27 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.03 0.28 9.12 -39.08 -0.36 -0.07 16 23 C -0.07 -0.55 6.84 -80.07 -0.55 -1.09 16 24 N 0.03 0.28 4.45 33.90 0.15 0.43 16 25 O -0.14 -1.64 18.43 -29.46 -0.54 -2.19 16 26 O -0.15 -1.61 18.43 -29.46 -0.54 -2.15 16 27 C 0.03 0.18 9.12 -39.08 -0.36 -0.18 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.11 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.17 1.52 7.23 -52.49 -0.38 1.14 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.18 1.55 7.13 -52.49 -0.37 1.17 16 40 H 0.18 0.89 7.13 -52.49 -0.37 0.51 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.40 370.65 -7.24 -39.64 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -4.47 Total: -4.88 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.73 Total: -5.77 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.89 Total: -25.16 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -2.49 Total: -25.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.40 -7.24 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.887 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds