Wall clock time and date at job start Tue Mar 31 2020 20:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34704 * 117.00250 * 2 1 4 4 O 1.21477 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.47736 * 120.00493 * 179.97438 * 3 2 1 6 6 C 1.39370 * 120.07755 * 179.97438 * 5 3 2 7 7 C 1.39338 * 119.69623 * 179.74437 * 6 5 3 8 8 C 1.47744 * 120.07620 * 180.27838 * 7 6 5 9 9 O 1.21470 * 120.00022 * 359.97438 * 8 7 6 10 10 O 1.34714 * 119.99852 * 180.02562 * 8 7 6 11 11 C 1.45195 * 116.99606 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46893 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46979 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99748 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00274 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47353 * 119.99802 * 18 16 14 21 21 H 1.48503 * 109.47120 * 240.00338 * 18 16 14 22 22 C 1.39767 * 119.84618 * 0.25770 * 7 6 5 23 23 C 1.38042 * 120.14996 * 359.97438 * 22 7 6 24 24 N 1.48025 * 119.84547 * 180.02562 * 23 22 7 25 25 O 1.21799 * 119.99983 * 359.97438 * 24 23 22 26 26 O 1.21798 * 120.00237 * 180.02562 * 24 23 22 27 27 C 1.38090 * 120.31228 * 0.02562 * 23 22 7 28 28 H 1.09001 * 109.46950 * 60.00956 * 1 2 3 29 29 H 1.09009 * 109.46971 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47457 * 300.00694 * 1 2 3 31 31 H 1.08002 * 120.15475 * 0.02737 * 6 5 3 32 32 H 1.08996 * 109.47548 * 299.99928 * 11 10 8 33 33 H 1.09005 * 109.46931 * 60.00507 * 11 10 8 34 34 H 1.09004 * 109.46734 * 299.99952 * 12 11 10 35 35 H 1.08997 * 109.47154 * 60.00175 * 12 11 10 36 36 H 1.09004 * 109.46805 * 299.99310 * 13 12 11 37 37 H 1.08997 * 109.47470 * 59.99769 * 13 12 11 38 38 H 0.97002 * 119.99578 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.91850 * 180.02562 * 22 7 6 40 40 H 1.08002 * 119.92720 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1733 2.5185 0.0000 7 6 5.5652 2.5823 0.0060 8 6 6.2464 3.8933 0.0117 9 8 5.5929 4.9173 0.0107 10 8 7.5922 3.9531 0.0169 11 6 8.1932 5.2748 0.0217 12 6 9.7174 5.1419 0.0266 13 6 10.3507 6.5347 0.0324 14 6 11.8521 6.4037 0.0365 15 1 12.3088 5.4251 0.0356 16 6 12.6426 7.5334 0.0415 17 7 12.0864 8.7252 0.0421 18 14 14.5035 7.3712 0.0474 19 1 14.8750 5.9333 0.0451 20 1 15.0615 8.0280 -1.1619 21 1 15.0534 8.0231 1.2631 22 6 6.3155 1.4031 0.0070 23 6 5.6806 0.1773 0.0026 24 7 6.4819 -1.0673 0.0043 25 8 7.6985 -1.0084 0.0090 26 8 5.9247 -2.1504 0.0000 27 6 4.3016 0.1067 -0.0033 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.5887 3.4267 -0.0004 32 1 7.8793 5.8200 -0.8683 33 1 7.8725 5.8165 0.9116 34 1 10.0317 4.5966 0.9166 35 1 10.0377 4.6004 -0.8634 36 1 10.0365 7.0803 -0.8574 37 1 10.0304 7.0759 0.9226 38 1 12.6425 9.5199 0.0459 39 1 7.3944 1.4511 0.0120 40 1 3.8113 -0.8556 -0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025394293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:19 Heat of formation + Delta-G solvation = -168.925660 kcal Electronic energy + Delta-G solvation = -27399.349331 eV Core-core repulsion = 22954.300012 eV Total energy + Delta-G solvation = -4445.049319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.44817 -42.18514 -41.60734 -40.11343 -38.00239 -37.79197 -37.73921 -35.97324 -33.97810 -33.62727 -33.38653 -29.23371 -28.80048 -27.89306 -26.43836 -25.66870 -24.61277 -22.88750 -22.20426 -22.02195 -20.40096 -19.97310 -19.07473 -18.75594 -18.74400 -18.45508 -18.06423 -17.85537 -17.62481 -17.59486 -17.38011 -16.55902 -16.41046 -15.82373 -15.09204 -14.85583 -14.80229 -14.20409 -14.19110 -13.85951 -13.83579 -13.82307 -13.70796 -13.10063 -12.87102 -12.79651 -12.58386 -12.51995 -12.40358 -12.35095 -12.15598 -12.10194 -11.98316 -11.92578 -11.51838 -11.46273 -11.23528 -11.21429 -10.99024 -10.57628 -8.22076 -6.32870 -1.55806 -1.24418 -0.29796 0.03383 0.70901 1.07666 1.28523 1.41664 1.41824 1.44596 1.55800 1.98776 2.41094 2.77065 2.91186 3.12363 3.17916 3.23851 3.40194 3.50499 3.77157 3.99097 3.99625 4.09912 4.27254 4.34430 4.36496 4.39748 4.42504 4.55912 4.74612 4.79744 4.80783 5.05918 5.07197 5.07740 5.23487 5.50018 5.64541 5.80937 6.18734 6.32979 6.34395 6.35896 6.83561 7.36777 8.90095 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002096 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.168200 B =13354.312894 C =15050.414967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.521 3.479 4 O -0.516 6.516 5 C -0.125 4.125 6 C 0.061 3.939 7 C -0.124 4.124 8 C 0.511 3.489 9 O -0.518 6.518 10 O -0.346 6.346 11 C 0.079 3.921 12 C -0.096 4.096 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.065 0.935 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.043 3.957 23 C -0.067 4.067 24 N 0.030 4.970 25 O -0.178 6.178 26 O -0.136 6.136 27 C 0.053 3.947 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.171 0.829 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.264 0.736 39 H 0.182 0.818 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.913 -22.587 -0.112 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.366 3.634 4 O -0.405 6.405 5 C -0.127 4.127 6 C 0.042 3.958 7 C -0.126 4.126 8 C 0.356 3.644 9 O -0.408 6.408 10 O -0.262 6.262 11 C 0.006 3.994 12 C -0.133 4.133 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.024 3.976 23 C -0.150 4.150 24 N 0.550 4.450 25 O -0.388 6.388 26 O -0.359 6.359 27 C 0.034 3.966 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.199 0.801 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -24.605 -21.175 -0.112 32.462 hybrid contribution 1.011 0.588 0.002 1.169 sum -23.594 -20.587 -0.110 31.313 Atomic orbital electron populations 1.23725 0.73103 1.06463 1.03122 1.86514 1.26031 1.30424 1.83409 1.20544 0.87859 0.82295 0.72725 1.90928 1.66636 1.36876 1.46097 1.18672 0.90583 0.92471 1.11000 1.21810 0.92386 0.99229 0.82346 1.18634 0.92802 0.89920 1.11206 1.20911 0.81576 0.89065 0.72875 1.90897 1.66912 1.36745 1.46209 1.86500 1.20430 1.36153 1.83135 1.23298 0.93901 0.79579 1.02620 1.21487 0.89811 0.99168 1.02881 1.18944 0.94916 0.91763 0.95623 1.21663 0.92570 0.93099 1.50566 0.91646 1.25985 1.04248 0.94975 0.94719 1.70101 1.37307 0.98298 1.51610 0.85372 0.79066 0.78774 0.77680 1.18383 1.20510 1.20498 1.21659 1.03957 0.88383 0.83601 1.20773 0.91873 0.84456 1.17857 1.43567 1.01426 1.02503 0.97536 1.94650 0.95485 1.94066 1.54635 1.94546 1.73840 1.15541 1.51965 1.21720 0.89811 1.01788 0.83238 0.91398 0.84312 0.91408 0.81199 0.91133 0.91124 0.91228 0.91223 0.98330 0.98320 0.92734 0.80117 0.78323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 113.37 1.20 1.35 16 2 O -0.35 -3.44 9.81 -56.14 -0.55 -3.99 16 3 C 0.52 7.29 7.90 70.33 0.56 7.84 16 4 O -0.52 -10.27 16.13 19.91 0.32 -9.95 16 5 C -0.13 -1.56 5.87 -20.13 -0.12 -1.68 16 6 C 0.06 0.95 9.14 22.81 0.21 1.15 16 7 C -0.12 -2.23 5.87 -20.13 -0.12 -2.35 16 8 C 0.51 13.11 7.90 70.34 0.56 13.67 16 9 O -0.52 -16.09 16.13 19.93 0.32 -15.77 16 10 O -0.35 -9.76 9.46 -56.24 -0.53 -10.29 16 11 C 0.08 2.64 5.47 71.98 0.39 3.03 16 12 C -0.10 -3.71 5.53 30.59 0.17 -3.54 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 15 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 18 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.04 0.69 9.12 22.59 0.21 0.90 16 23 C -0.07 -0.98 6.84 36.29 0.25 -0.73 16 24 N 0.03 0.56 4.45 -46.65 -0.21 0.36 16 25 O -0.18 -4.10 18.43 18.89 0.35 -3.76 16 26 O -0.14 -2.58 18.43 18.89 0.35 -2.23 16 27 C 0.05 0.56 9.12 22.60 0.21 0.76 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.14 -0.13 8.14 -2.38 -0.02 -0.14 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.17 2.87 7.23 -2.91 -0.02 2.85 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 37 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.18 2.93 7.13 -2.91 -0.02 2.91 16 40 H 0.20 1.21 7.13 -2.91 -0.02 1.19 16 Total: -1.00 -69.97 370.65 7.80 -62.17 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.09 Total: 1.03 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 4.35 Total: -7.50 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.08 Total: -55.31 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: 0.26 Total: -45.99 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.97 7.80 -62.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.756 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds