Wall clock time and date at job start Tue Mar 31 2020 19:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34087 * 125.79664 * 2 1 4 4 C 1.34161 * 110.78708 * 180.15959 * 3 2 1 5 5 C 1.34323 * 109.05082 * 359.55381 * 4 3 2 6 6 C 1.36036 * 125.78780 * 179.66754 * 2 1 3 7 7 C 1.47908 * 127.13848 * 0.04469 * 6 2 1 8 8 N 1.31252 * 126.47238 * 359.68869 * 7 6 2 9 9 N 1.28503 * 109.98467 * 179.81915 * 8 7 6 10 10 C 1.31291 * 110.10775 * 0.45141 * 9 8 7 11 11 S 1.76203 * 126.39326 * 179.70200 * 10 9 8 12 12 C 1.80997 * 99.99742 * 0.02848 * 11 10 9 13 13 C 1.50703 * 109.47350 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99294 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00183 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99761 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46738 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00240 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99675 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47251 * 90.00230 * 21 19 17 23 23 H 1.48502 * 109.47126 * 210.00341 * 21 19 17 24 24 H 1.48501 * 109.47219 * 330.00019 * 21 19 17 25 25 N 1.36728 * 107.21699 * 359.73130 * 10 9 8 26 26 N 1.36603 * 127.18510 * 180.02562 * 25 10 9 27 27 H 1.08992 * 109.47347 * 270.33543 * 1 2 3 28 28 H 1.09005 * 109.46728 * 30.32818 * 1 2 3 29 29 H 1.09000 * 109.47194 * 150.32604 * 1 2 3 30 30 H 1.08002 * 125.47906 * 179.82233 * 4 3 2 31 31 H 1.07994 * 126.98810 * 180.26677 * 5 4 3 32 32 H 1.09001 * 109.47350 * 299.99652 * 12 11 10 33 33 H 1.09008 * 109.47519 * 59.99787 * 12 11 10 34 34 H 0.97000 * 119.99819 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.46907 * 299.99797 * 16 15 13 36 36 H 1.08993 * 109.47247 * 59.99811 * 16 15 13 37 37 H 0.97004 * 119.99720 * 179.97438 * 20 19 17 38 38 H 1.00896 * 111.00262 * 269.97538 * 26 25 10 39 39 H 1.00906 * 111.00166 * 33.92295 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2913 1.0876 0.0000 4 6 3.5871 0.7401 -0.0035 5 6 3.6818 -0.5997 0.0040 6 6 2.3025 -1.1035 0.0064 7 6 1.8682 -2.5174 0.0137 8 7 0.6302 -2.9533 0.0210 9 7 0.6171 -4.2382 0.0220 10 6 1.8453 -4.7022 0.0252 11 16 2.3220 -6.3985 0.0351 12 6 0.6910 -7.1833 0.0380 13 6 0.8544 -8.6814 0.0459 14 8 1.9643 -9.1702 0.0488 15 7 -0.2329 -9.4778 0.0487 16 6 -0.0740 -10.9342 0.0570 17 6 -1.4320 -11.5876 0.0580 18 1 -2.3241 -10.9790 0.0534 19 6 -1.5354 -12.9625 0.0647 20 7 -0.4490 -13.7036 0.0698 21 14 -3.2186 -13.7724 0.0667 22 1 -3.6630 -13.9942 -1.3328 23 1 -3.1398 -15.0761 0.7735 24 1 -4.1913 -12.8910 0.7612 25 7 2.6854 -3.6235 0.0201 26 7 4.0513 -3.6408 0.0205 27 1 -0.3633 0.0060 1.0276 28 1 -0.3633 0.8871 -0.5190 29 1 -0.3633 -0.8929 -0.5088 30 1 4.4203 1.4273 -0.0070 31 1 4.5881 -1.1870 0.0076 32 1 0.1400 -6.8729 0.9258 33 1 0.1415 -6.8827 -0.8542 34 1 -1.1205 -9.0867 0.0453 35 1 0.4775 -11.2445 -0.8306 36 1 0.4750 -11.2348 0.9493 37 1 -0.5218 -14.6709 0.0749 38 1 4.4127 -3.6403 0.9625 39 1 4.4032 -4.4296 -0.5012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026127785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:21 Heat of formation + Delta-G solvation = 78.084435 kcal Electronic energy + Delta-G solvation = -24872.253453 eV Core-core repulsion = 20945.253668 eV Total energy + Delta-G solvation = -3926.999784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.19615 -42.63251 -38.96144 -36.77352 -34.37608 -34.13661 -32.48928 -32.19175 -30.75008 -30.00034 -29.91948 -27.04313 -26.81649 -23.79810 -23.13687 -22.67463 -21.63166 -20.20667 -20.04296 -18.94128 -17.87929 -17.57614 -17.14222 -16.71956 -16.53221 -15.93867 -15.58618 -15.38381 -15.20710 -15.01647 -14.32479 -14.00144 -13.75541 -13.42490 -13.23320 -13.14784 -13.04952 -12.83760 -12.29266 -12.05266 -12.00966 -11.76670 -11.74078 -11.13080 -11.10500 -11.01925 -10.92976 -10.57607 -10.37599 -10.06226 -9.66341 -9.49366 -9.42237 -8.83616 -8.78899 -8.07687 -7.72681 -6.22689 -4.30162 0.71926 0.78282 1.55947 1.78932 1.84483 2.03769 2.53565 2.84438 3.04688 3.21764 3.28120 3.30435 3.67922 3.84535 4.09265 4.30467 4.37614 4.45536 4.90311 5.01818 5.05530 5.07586 5.14042 5.18439 5.25482 5.29066 5.39047 5.41908 5.57311 5.61497 5.94931 5.99575 6.03281 6.73062 7.01871 7.15796 7.21352 7.40265 7.55873 7.87901 8.27456 8.40878 8.62789 8.87331 9.36327 10.87377 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.001892 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.036846 B =14791.886291 C =15686.288932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.058 3.942 3 O -0.176 6.176 4 C -0.042 4.042 5 C -0.179 4.179 6 C -0.129 4.129 7 C 0.291 3.709 8 N -0.275 5.275 9 N -0.278 5.278 10 C 0.114 3.886 11 S 0.071 5.929 12 C -0.137 4.137 13 C 0.516 3.484 14 O -0.544 6.544 15 N -0.699 5.699 16 C 0.250 3.750 17 C -0.546 4.546 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.304 5.304 26 N -0.581 5.581 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.208 0.792 31 H 0.162 0.838 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.395 0.605 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.366 0.634 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 28.909 0.526 30.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.004 3.996 3 O -0.073 6.073 4 C -0.108 4.108 5 C -0.199 4.199 6 C -0.134 4.134 7 C 0.025 3.975 8 N -0.117 5.117 9 N -0.123 5.123 10 C -0.261 4.261 11 S 0.298 5.702 12 C -0.289 4.289 13 C 0.298 3.702 14 O -0.424 6.424 15 N -0.347 5.347 16 C 0.129 3.871 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.087 5.087 26 N -0.213 5.213 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.224 0.776 31 H 0.179 0.821 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.229 0.771 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.184 0.816 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.574 28.758 0.173 30.009 hybrid contribution -0.727 -0.961 0.455 1.288 sum 7.847 27.797 0.628 28.890 Atomic orbital electron populations 1.20573 0.83696 1.05118 1.04399 1.22630 0.94050 0.82825 1.00144 1.83878 1.17051 1.34457 1.71881 1.23875 0.83720 0.96198 1.07027 1.22849 0.96523 0.94058 1.06447 1.18317 0.93404 0.86999 1.14630 1.21687 0.85266 0.86905 1.03616 1.74336 1.14743 1.03178 1.19467 1.74661 1.15354 1.02596 1.19690 1.27899 0.90989 0.97816 1.09379 1.86074 1.08950 0.82873 1.92289 1.23821 0.98241 0.97503 1.09347 1.19448 0.86022 0.86294 0.78431 1.90711 1.24673 1.75731 1.51279 1.46392 1.07313 1.09772 1.71245 1.19214 0.97758 0.72027 0.98070 1.21206 0.91738 0.91906 1.53589 0.91703 1.24952 0.97391 0.97077 0.94553 1.69970 1.27853 1.05721 1.48641 0.86383 0.83274 0.78807 0.78279 1.20403 1.20968 1.19678 1.45027 1.02128 1.04691 1.56842 1.59790 0.87995 1.51552 1.21927 0.89360 0.90323 0.87391 0.77593 0.82064 0.85837 0.85797 0.77129 0.95169 0.95176 0.92356 0.81643 0.80308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.01 36.00 0.36 -0.27 16 2 C 0.06 0.55 7.37 -35.10 -0.26 0.29 16 3 O -0.18 -1.53 10.55 6.67 0.07 -1.46 16 4 C -0.04 -0.28 12.04 29.35 0.35 0.07 16 5 C -0.18 -1.45 10.59 -37.48 -0.40 -1.85 16 6 C -0.13 -1.38 6.32 -103.25 -0.65 -2.03 16 7 C 0.29 3.69 7.99 -153.79 -1.23 2.46 16 8 N -0.28 -3.94 10.40 32.60 0.34 -3.60 16 9 N -0.28 -4.17 11.58 30.72 0.36 -3.81 16 10 C 0.11 1.52 8.14 -88.15 -0.72 0.80 16 11 S 0.07 0.95 21.11 -107.50 -2.27 -1.32 16 12 C -0.14 -1.94 5.71 36.01 0.21 -1.73 16 13 C 0.52 9.73 7.85 -10.99 -0.09 9.64 16 14 O -0.54 -12.26 15.86 5.56 0.09 -12.17 16 15 N -0.70 -14.04 5.55 -61.47 -0.34 -14.38 16 16 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 17 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.57 13.29 55.43 0.74 -24.83 16 21 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 N -0.30 -3.49 3.84 -10.36 -0.04 -3.53 16 26 N -0.58 -4.38 9.05 60.35 0.55 -3.83 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.11 0.98 6.64 -51.93 -0.34 0.64 16 30 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.16 1.06 7.23 -52.49 -0.38 0.68 16 32 H 0.12 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.12 1.59 8.14 -51.91 -0.42 1.17 16 34 H 0.40 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.37 1.99 9.21 -181.37 -1.67 0.32 16 39 H 0.38 2.44 8.80 -181.36 -1.60 0.85 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -34.54 361.28 -9.78 -44.32 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.82 Total: 3.02 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.87 Total: 0.62 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 1.60 Total: -53.98 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.16 Total: -13.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.27 Total: -1.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.54 -9.78 -44.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026127785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.404 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds