Wall clock time and date at job start Tue Mar 31 2020 19:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34087 * 125.79664 * 2 1 4 4 C 1.34161 * 110.78708 * 180.15959 * 3 2 1 5 5 C 1.34323 * 109.05082 * 359.55381 * 4 3 2 6 6 C 1.36036 * 125.78780 * 179.66754 * 2 1 3 7 7 C 1.47908 * 127.13848 * 0.04469 * 6 2 1 8 8 N 1.31252 * 126.47238 * 359.68869 * 7 6 2 9 9 N 1.28503 * 109.98467 * 179.81915 * 8 7 6 10 10 C 1.31291 * 110.10775 * 0.45141 * 9 8 7 11 11 S 1.76203 * 126.39326 * 179.70200 * 10 9 8 12 12 C 1.80997 * 99.99742 * 0.02848 * 11 10 9 13 13 C 1.50703 * 109.47350 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99294 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00183 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99761 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46738 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00240 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99675 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47251 * 90.00230 * 21 19 17 23 23 H 1.48502 * 109.47126 * 210.00341 * 21 19 17 24 24 H 1.48501 * 109.47219 * 330.00019 * 21 19 17 25 25 N 1.36728 * 107.21699 * 359.73130 * 10 9 8 26 26 N 1.36603 * 127.18510 * 180.02562 * 25 10 9 27 27 H 1.08992 * 109.47347 * 270.33543 * 1 2 3 28 28 H 1.09005 * 109.46728 * 30.32818 * 1 2 3 29 29 H 1.09000 * 109.47194 * 150.32604 * 1 2 3 30 30 H 1.08002 * 125.47906 * 179.82233 * 4 3 2 31 31 H 1.07994 * 126.98810 * 180.26677 * 5 4 3 32 32 H 1.09001 * 109.47350 * 299.99652 * 12 11 10 33 33 H 1.09008 * 109.47519 * 59.99787 * 12 11 10 34 34 H 0.97000 * 119.99819 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.46907 * 299.99797 * 16 15 13 36 36 H 1.08993 * 109.47247 * 59.99811 * 16 15 13 37 37 H 0.97004 * 119.99720 * 179.97438 * 20 19 17 38 38 H 1.00896 * 111.00262 * 269.97538 * 26 25 10 39 39 H 1.00906 * 111.00166 * 33.92295 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2913 1.0876 0.0000 4 6 3.5871 0.7401 -0.0035 5 6 3.6818 -0.5997 0.0040 6 6 2.3025 -1.1035 0.0064 7 6 1.8682 -2.5174 0.0137 8 7 0.6302 -2.9533 0.0210 9 7 0.6171 -4.2382 0.0220 10 6 1.8453 -4.7022 0.0252 11 16 2.3220 -6.3985 0.0351 12 6 0.6910 -7.1833 0.0380 13 6 0.8544 -8.6814 0.0459 14 8 1.9643 -9.1702 0.0488 15 7 -0.2329 -9.4778 0.0487 16 6 -0.0740 -10.9342 0.0570 17 6 -1.4320 -11.5876 0.0580 18 1 -2.3241 -10.9790 0.0534 19 6 -1.5354 -12.9625 0.0647 20 7 -0.4490 -13.7036 0.0698 21 14 -3.2186 -13.7724 0.0667 22 1 -3.6630 -13.9942 -1.3328 23 1 -3.1398 -15.0761 0.7735 24 1 -4.1913 -12.8910 0.7612 25 7 2.6854 -3.6235 0.0201 26 7 4.0513 -3.6408 0.0205 27 1 -0.3633 0.0060 1.0276 28 1 -0.3633 0.8871 -0.5190 29 1 -0.3633 -0.8929 -0.5088 30 1 4.4203 1.4273 -0.0070 31 1 4.5881 -1.1870 0.0076 32 1 0.1400 -6.8729 0.9258 33 1 0.1415 -6.8827 -0.8542 34 1 -1.1205 -9.0867 0.0453 35 1 0.4775 -11.2445 -0.8306 36 1 0.4750 -11.2348 0.9493 37 1 -0.5218 -14.6709 0.0749 38 1 4.4127 -3.6403 0.9625 39 1 4.4032 -4.4296 -0.5012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026127785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:21 Heat of formation + Delta-G solvation = 54.048139 kcal Electronic energy + Delta-G solvation = -24873.295745 eV Core-core repulsion = 20945.253668 eV Total energy + Delta-G solvation = -3928.042076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.09271 -43.31173 -40.61618 -37.59821 -36.25243 -34.86663 -34.44165 -32.78244 -31.90724 -31.13068 -30.80590 -28.81308 -27.58312 -24.87257 -24.44348 -24.04847 -22.32462 -21.71269 -20.91813 -19.88844 -18.94824 -18.60370 -18.16087 -17.80257 -17.63171 -17.17333 -17.07817 -16.81727 -16.28406 -16.10534 -15.79579 -15.15826 -14.65367 -14.60898 -14.40043 -14.08629 -14.02450 -13.80161 -13.70846 -13.57065 -13.15965 -12.92756 -12.82616 -12.72424 -12.53622 -12.24494 -12.07260 -12.01748 -11.56723 -11.50273 -11.11125 -10.85959 -10.82434 -10.38564 -9.95750 -9.49045 -8.73978 -8.30451 -6.46521 -0.34532 -0.05872 0.68144 0.86158 1.00639 1.23591 1.44040 1.45339 1.49858 1.56823 1.94462 1.99401 2.25537 2.45787 2.95044 3.05005 3.38971 3.66047 3.71518 3.74831 3.92054 4.14846 4.24222 4.32971 4.38004 4.64459 4.69986 4.76223 4.88263 4.98087 5.06567 5.21723 5.31974 5.40033 5.43976 5.47762 5.59969 5.81598 6.10360 6.24330 6.61712 6.70260 7.17284 7.29195 7.31610 8.81405 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.001892 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.036846 B =14791.886291 C =15686.288932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.053 3.947 3 O -0.181 6.181 4 C -0.028 4.028 5 C -0.192 4.192 6 C -0.159 4.159 7 C 0.293 3.707 8 N -0.299 5.299 9 N -0.302 5.302 10 C 0.108 3.892 11 S 0.081 5.919 12 C -0.127 4.127 13 C 0.519 3.481 14 O -0.583 6.583 15 N -0.695 5.695 16 C 0.266 3.734 17 C -0.558 4.558 18 H 0.084 0.916 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.983 3.017 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.257 1.257 25 N -0.302 5.302 26 N -0.572 5.572 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.249 0.751 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.412 0.588 35 H -0.005 1.005 36 H -0.005 1.005 37 H 0.269 0.731 38 H 0.379 0.621 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 31.162 0.591 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.001 4.001 3 O -0.077 6.077 4 C -0.094 4.094 5 C -0.212 4.212 6 C -0.164 4.164 7 C 0.027 3.973 8 N -0.141 5.141 9 N -0.147 5.147 10 C -0.268 4.268 11 S 0.307 5.693 12 C -0.279 4.279 13 C 0.303 3.697 14 O -0.465 6.465 15 N -0.345 5.345 16 C 0.144 3.856 17 C -0.596 4.596 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.567 5.567 21 Si 0.806 3.194 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.181 1.181 25 N -0.083 5.083 26 N -0.206 5.206 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.265 0.735 31 H 0.192 0.808 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.249 0.751 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.078 0.922 38 H 0.199 0.801 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.060 31.063 0.244 32.093 hybrid contribution -0.416 -1.520 0.431 1.633 sum 7.644 29.544 0.675 30.524 Atomic orbital electron populations 1.20586 0.82956 1.05254 1.04889 1.22899 0.94770 0.82892 0.99565 1.83904 1.17940 1.34134 1.71718 1.24691 0.83679 0.96491 1.04493 1.23047 0.95845 0.94858 1.07427 1.18590 0.95128 0.86279 1.16359 1.22043 0.85056 0.87875 1.02333 1.74277 1.15955 1.02980 1.20895 1.74565 1.16400 1.03187 1.20596 1.27824 0.91195 0.97989 1.09794 1.86055 1.07738 0.82868 1.92611 1.23636 0.99634 0.93460 1.11171 1.20082 0.84825 0.88180 0.76585 1.90694 1.26171 1.77077 1.52554 1.46085 1.08827 1.07841 1.71744 1.18649 0.96992 0.75259 0.94747 1.21614 0.92404 0.92520 1.53030 0.89769 1.26017 1.01646 0.97895 0.93869 1.70121 1.30608 1.06124 1.49834 0.85181 0.78078 0.77572 0.78551 1.19681 1.20970 1.18051 1.45072 1.03353 1.03843 1.56037 1.59876 0.85850 1.51797 1.23083 0.88669 0.88339 0.89010 0.73509 0.80849 0.83943 0.83972 0.75128 0.98744 0.98716 0.92212 0.80101 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.01 71.24 0.71 -0.47 16 2 C 0.05 0.96 7.37 25.17 0.19 1.15 16 3 O -0.18 -2.75 10.55 0.95 0.01 -2.74 16 4 C -0.03 -0.30 12.04 66.92 0.81 0.51 16 5 C -0.19 -2.72 10.59 23.63 0.25 -2.47 16 6 C -0.16 -3.24 6.32 -18.98 -0.12 -3.36 16 7 C 0.29 7.27 7.99 136.25 1.09 8.36 16 8 N -0.30 -8.53 10.40 -50.78 -0.53 -9.06 16 9 N -0.30 -8.93 11.58 -56.73 -0.66 -9.59 16 10 C 0.11 2.79 8.14 179.49 1.46 4.25 16 11 S 0.08 2.08 21.11 -56.49 -1.19 0.89 16 12 C -0.13 -3.48 5.71 71.24 0.41 -3.08 16 13 C 0.52 19.63 7.85 87.66 0.69 20.32 16 14 O -0.58 -26.91 15.86 -3.03 -0.05 -26.95 16 15 N -0.70 -28.11 5.55 -466.78 -2.59 -30.70 16 16 C 0.27 14.10 5.43 85.63 0.46 14.56 16 17 C -0.56 -29.65 9.28 25.60 0.24 -29.41 16 18 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 19 C 0.01 0.31 5.46 84.66 0.46 0.77 16 20 N -0.93 -54.94 13.29 21.45 0.28 -54.65 16 21 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 N -0.30 -6.65 3.84 -186.69 -0.72 -7.36 16 26 N -0.57 -7.81 9.05 37.02 0.34 -7.47 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 1.68 6.64 -2.39 -0.02 1.66 16 30 H 0.25 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.17 1.89 7.23 -2.91 -0.02 1.86 16 32 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.41 13.75 8.32 -92.71 -0.77 12.97 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.38 3.50 9.21 -210.56 -1.94 1.56 16 39 H 0.39 4.45 8.80 -210.55 -1.85 2.59 16 Total: -1.00 -76.79 361.28 0.16 -76.64 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -3.41 Total: 16.02 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.64 Total: 11.14 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -3.87 Total: -118.84 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.19 Total: 0.89 kcal Total: -76.79 0.16 -76.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026127785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.686 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds