Wall clock time and date at job start Tue Mar 31 2020 20:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36027 * 117.00020 * 2 1 4 4 C 1.38503 * 120.06548 * 359.72790 * 3 2 1 5 5 C 1.38284 * 120.02514 * 179.74423 * 4 3 2 6 6 C 1.38353 * 120.16910 * 0.55303 * 5 4 3 7 7 Cl 1.73603 * 119.93498 * 179.72654 * 6 5 4 8 8 C 1.38319 * 120.13778 * 359.69603 * 6 5 4 9 9 C 1.38721 * 119.96555 * 0.02825 * 8 6 5 10 10 N 1.39962 * 120.08533 * 179.97438 * 9 8 6 11 11 C 1.46494 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.52996 * 109.47271 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47749 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99542 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00447 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99672 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00651 * 17.72420 * 16 15 13 18 18 C 1.38954 * 119.99804 * 197.71880 * 16 15 13 19 19 N 1.31416 * 119.99576 * 21.40385 * 18 16 15 20 20 Si 1.86799 * 120.00132 * 201.40493 * 18 16 15 21 21 H 1.48498 * 109.47386 * 90.00227 * 20 18 16 22 22 H 1.48503 * 109.47134 * 210.00118 * 20 18 16 23 23 H 1.48502 * 109.47137 * 329.99676 * 20 18 16 24 24 C 1.46496 * 119.99752 * 359.97438 * 15 13 12 25 25 C 1.47193 * 109.47185 * 84.23594 * 24 15 13 26 26 N 7.58012 * 139.82919 * 210.02329 * 2 1 3 27 27 H 1.09005 * 109.46974 * 59.99615 * 1 2 3 28 28 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47044 * 299.99520 * 1 2 3 30 30 H 1.07997 * 119.98313 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.91461 * 180.27409 * 5 4 3 32 32 H 1.07997 * 120.01765 * 180.02562 * 8 6 5 33 33 H 0.97004 * 120.00137 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47613 * 300.00136 * 11 10 9 35 35 H 1.08997 * 109.47189 * 60.00395 * 11 10 9 36 36 H 1.09010 * 109.47223 * 300.00297 * 12 11 10 37 37 H 1.09003 * 109.47613 * 59.99886 * 12 11 10 38 38 H 0.97000 * 119.99713 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.46755 * 204.23650 * 24 15 13 40 40 H 1.09003 * 109.47301 * 324.23231 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2936 2.3745 -0.0057 5 6 1.9223 3.6061 -0.0003 6 6 3.3037 3.6817 -0.0008 7 17 4.0866 5.2312 -0.0013 8 6 4.0625 2.5252 -0.0004 9 6 3.4377 1.2866 0.0000 10 7 4.2031 0.1148 0.0000 11 6 5.6658 0.1953 0.0001 12 6 6.2543 -1.2170 -0.0006 13 6 7.7590 -1.1343 0.0001 14 8 8.3069 -0.0520 0.0006 15 7 8.4960 -2.2627 -0.0009 16 6 9.8649 -2.1873 -0.0007 17 1 10.3552 -1.2683 0.2848 18 6 10.6217 -3.2933 -0.3680 19 7 10.0840 -4.2439 -1.0989 20 14 12.4031 -3.4289 0.1774 21 1 12.4686 -4.1294 1.4851 22 1 13.1734 -4.1962 -0.8342 23 1 12.9837 -2.0690 0.3145 24 6 7.8343 -3.5697 -0.0021 25 6 7.4884 -3.9432 -1.3832 26 7 7.2212 -4.2336 -2.4466 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2151 2.3188 -0.0097 31 1 1.3333 4.5115 -0.0003 32 1 5.1407 2.5864 -0.0003 33 1 3.7649 -0.7507 -0.0001 34 1 6.0005 0.7284 -0.8898 35 1 6.0003 0.7281 0.8901 36 1 5.9197 -1.7505 0.8891 37 1 5.9198 -1.7496 -0.8909 38 1 10.6123 -5.0158 -1.3556 39 1 8.5063 -4.3175 0.4192 40 1 6.9262 -3.5178 0.5986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:49 Heat of formation + Delta-G solvation = -11.155512 kcal Electronic energy + Delta-G solvation = -25730.397206 eV Core-core repulsion = 21765.191229 eV Total energy + Delta-G solvation = -3965.205976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41060 -39.02747 -37.83259 -36.62996 -35.96505 -35.41394 -34.39913 -32.09730 -31.32398 -30.15071 -28.55523 -27.49253 -27.26127 -25.25088 -23.50622 -22.24013 -21.43976 -19.30944 -18.34848 -17.96326 -17.21103 -16.81071 -16.47043 -16.07557 -15.96041 -15.14255 -15.09260 -14.84809 -14.45459 -14.28057 -14.11108 -13.71558 -13.64538 -13.08295 -13.05081 -12.67358 -12.55895 -12.22327 -12.10181 -11.99557 -11.73736 -11.47577 -11.41010 -11.38111 -11.26849 -11.15213 -10.90926 -10.78606 -10.61614 -10.43480 -10.35167 -9.99181 -9.32134 -8.70884 -8.58552 -8.11291 -7.25841 -6.56195 -4.05720 1.13169 1.34973 2.12869 3.03801 3.06447 3.19345 3.23142 3.39105 3.51983 3.59124 3.74297 3.92823 4.08826 4.59823 4.73381 4.78606 4.84528 4.92220 4.97994 5.07662 5.14261 5.20291 5.24112 5.33754 5.37612 5.50400 5.60817 5.70535 5.78809 6.03782 6.06806 6.15174 6.20330 6.22402 6.44510 6.44777 6.94336 7.36758 7.42378 7.74220 7.84142 8.21348 8.67987 8.93553 9.12935 9.65325 10.49954 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.002632 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.670449 B =10636.187576 C =12223.859096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C 0.053 3.947 4 C -0.152 4.152 5 C -0.139 4.139 6 C -0.015 4.015 7 Cl -0.075 7.075 8 C -0.163 4.163 9 C 0.218 3.782 10 N -0.737 5.737 11 C 0.141 3.859 12 C -0.147 4.147 13 C 0.459 3.541 14 O -0.572 6.572 15 N -0.441 5.441 16 C -0.315 4.315 17 H 0.110 0.890 18 C 0.032 3.968 19 N -0.876 5.876 20 Si 0.928 3.072 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.220 3.780 25 C 0.245 3.755 26 N -0.471 5.471 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.405 0.595 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.274 0.726 39 H 0.128 0.872 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 7.653 6.005 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.004 3.996 4 C -0.172 4.172 5 C -0.161 4.161 6 C -0.042 4.042 7 Cl -0.046 7.046 8 C -0.187 4.187 9 C 0.112 3.888 10 N -0.366 5.366 11 C 0.017 3.983 12 C -0.188 4.188 13 C 0.247 3.753 14 O -0.455 6.455 15 N -0.161 5.161 16 C -0.442 4.442 17 H 0.128 0.872 18 C -0.171 4.171 19 N -0.515 5.515 20 Si 0.755 3.245 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C 0.093 3.907 25 C -0.074 4.074 26 N -0.151 5.151 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.161 0.839 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.145 0.855 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.108 7.538 4.355 20.092 hybrid contribution 0.717 -0.350 0.406 0.895 sum -17.391 7.188 4.761 19.411 Atomic orbital electron populations 1.22999 0.78450 1.03796 1.01116 1.85999 1.21206 1.26319 1.89718 1.18482 0.90306 0.85022 1.05758 1.20855 0.99655 0.91104 1.05585 1.20500 0.92134 0.97717 1.05700 1.20463 0.92430 0.86110 1.05236 1.98360 1.81148 1.28130 1.97007 1.20416 1.00758 0.88732 1.08799 1.16967 0.86931 0.87620 0.97285 1.44704 1.05367 1.05312 1.81262 1.21078 0.77619 0.96854 1.02700 1.21727 0.95639 0.97776 1.03656 1.19813 0.87638 0.84756 0.83110 1.90569 1.73224 1.27317 1.54363 1.43623 1.06430 1.02296 1.63738 1.19749 0.79292 1.00716 1.44459 0.87242 1.25291 1.00618 0.96277 0.94959 1.69861 1.38566 1.11220 1.31868 0.85882 0.81555 0.78765 0.78335 1.20104 1.21109 1.19276 1.18751 0.97588 0.89125 0.85274 1.29226 0.89952 0.92682 0.95504 1.80836 1.13293 1.09056 1.11888 0.92833 0.88370 0.92814 0.84890 0.85309 0.83878 0.75913 0.91304 0.91103 0.89338 0.89717 0.91566 0.85450 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.40 9.74 -19.83 -0.19 -3.60 16 3 C 0.05 0.62 6.70 -39.08 -0.26 0.35 16 4 C -0.15 -1.51 9.04 -39.47 -0.36 -1.87 16 5 C -0.14 -1.46 9.82 -39.52 -0.39 -1.84 16 6 C -0.02 -0.18 6.32 -39.51 -0.25 -0.43 16 7 Cl -0.08 -0.88 28.95 -51.86 -1.50 -2.38 16 8 C -0.16 -2.15 9.09 -39.37 -0.36 -2.51 16 9 C 0.22 2.85 6.67 -83.57 -0.56 2.29 16 10 N -0.74 -9.61 5.73 -58.51 -0.34 -9.95 16 11 C 0.14 2.11 4.21 -4.05 -0.02 2.09 16 12 C -0.15 -2.30 4.42 -27.88 -0.12 -2.43 16 13 C 0.46 9.76 7.57 -10.98 -0.08 9.68 16 14 O -0.57 -14.15 15.63 5.54 0.09 -14.06 16 15 N -0.44 -9.81 2.60 -117.94 -0.31 -10.11 16 16 C -0.32 -7.88 9.32 -14.93 -0.14 -8.02 16 17 H 0.11 2.90 7.39 -52.49 -0.39 2.51 16 18 C 0.03 0.78 4.87 -17.46 -0.08 0.69 16 19 N -0.88 -21.60 9.48 55.50 0.53 -21.07 16 20 Si 0.93 19.25 29.60 -169.99 -5.03 14.22 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C 0.22 4.13 4.91 -6.83 -0.03 4.10 16 25 C 0.24 5.20 12.94 -20.82 -0.27 4.93 16 26 N -0.47 -10.88 18.53 42.09 0.78 -10.10 16 27 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 30 H 0.13 0.95 6.29 -52.49 -0.33 0.62 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.14 1.96 6.74 -52.49 -0.35 1.61 16 33 H 0.41 4.87 7.84 -40.82 -0.32 4.55 16 34 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 35 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 36 H 0.09 1.13 7.42 -51.92 -0.39 0.74 16 37 H 0.08 1.32 7.51 -51.93 -0.39 0.93 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.13 2.47 6.46 -51.93 -0.34 2.13 16 40 H 0.08 1.16 6.68 -51.93 -0.35 0.81 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -30.38 359.25 -6.94 -37.32 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.45 Total: 6.07 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.93 Total: 8.25 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.66 Total: -51.24 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.11 Total: -17.66 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.38 -6.94 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.167 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds