Wall clock time and date at job start Tue Mar 31 2020 20:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36027 * 117.00020 * 2 1 4 4 C 1.38503 * 120.06548 * 359.72790 * 3 2 1 5 5 C 1.38284 * 120.02514 * 179.74423 * 4 3 2 6 6 C 1.38353 * 120.16910 * 0.55303 * 5 4 3 7 7 Cl 1.73603 * 119.93498 * 179.72654 * 6 5 4 8 8 C 1.38319 * 120.13778 * 359.69603 * 6 5 4 9 9 C 1.38721 * 119.96555 * 0.02825 * 8 6 5 10 10 N 1.39962 * 120.08533 * 179.97438 * 9 8 6 11 11 C 1.46494 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.52996 * 109.47271 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47749 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99542 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00447 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99672 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00651 * 17.72420 * 16 15 13 18 18 C 1.38954 * 119.99804 * 197.71880 * 16 15 13 19 19 N 1.31416 * 119.99576 * 21.40385 * 18 16 15 20 20 Si 1.86799 * 120.00132 * 201.40493 * 18 16 15 21 21 H 1.48498 * 109.47386 * 90.00227 * 20 18 16 22 22 H 1.48503 * 109.47134 * 210.00118 * 20 18 16 23 23 H 1.48502 * 109.47137 * 329.99676 * 20 18 16 24 24 C 1.46496 * 119.99752 * 359.97438 * 15 13 12 25 25 C 1.47193 * 109.47185 * 84.23594 * 24 15 13 26 26 N 7.58012 * 139.82919 * 210.02329 * 2 1 3 27 27 H 1.09005 * 109.46974 * 59.99615 * 1 2 3 28 28 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47044 * 299.99520 * 1 2 3 30 30 H 1.07997 * 119.98313 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.91461 * 180.27409 * 5 4 3 32 32 H 1.07997 * 120.01765 * 180.02562 * 8 6 5 33 33 H 0.97004 * 120.00137 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47613 * 300.00136 * 11 10 9 35 35 H 1.08997 * 109.47189 * 60.00395 * 11 10 9 36 36 H 1.09010 * 109.47223 * 300.00297 * 12 11 10 37 37 H 1.09003 * 109.47613 * 59.99886 * 12 11 10 38 38 H 0.97000 * 119.99713 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.46755 * 204.23650 * 24 15 13 40 40 H 1.09003 * 109.47301 * 324.23231 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2936 2.3745 -0.0057 5 6 1.9223 3.6061 -0.0003 6 6 3.3037 3.6817 -0.0008 7 17 4.0866 5.2312 -0.0013 8 6 4.0625 2.5252 -0.0004 9 6 3.4377 1.2866 0.0000 10 7 4.2031 0.1148 0.0000 11 6 5.6658 0.1953 0.0001 12 6 6.2543 -1.2170 -0.0006 13 6 7.7590 -1.1343 0.0001 14 8 8.3069 -0.0520 0.0006 15 7 8.4960 -2.2627 -0.0009 16 6 9.8649 -2.1873 -0.0007 17 1 10.3552 -1.2683 0.2848 18 6 10.6217 -3.2933 -0.3680 19 7 10.0840 -4.2439 -1.0989 20 14 12.4031 -3.4289 0.1774 21 1 12.4686 -4.1294 1.4851 22 1 13.1734 -4.1962 -0.8342 23 1 12.9837 -2.0690 0.3145 24 6 7.8343 -3.5697 -0.0021 25 6 7.4884 -3.9432 -1.3832 26 7 7.2212 -4.2336 -2.4466 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2151 2.3188 -0.0097 31 1 1.3333 4.5115 -0.0003 32 1 5.1407 2.5864 -0.0003 33 1 3.7649 -0.7507 -0.0001 34 1 6.0005 0.7284 -0.8898 35 1 6.0003 0.7281 0.8901 36 1 5.9197 -1.7505 0.8891 37 1 5.9198 -1.7496 -0.8909 38 1 10.6123 -5.0158 -1.3556 39 1 8.5063 -4.3175 0.4192 40 1 6.9262 -3.5178 0.5986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060336111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:48 Heat of formation + Delta-G solvation = -29.625414 kcal Electronic energy + Delta-G solvation = -25731.198121 eV Core-core repulsion = 21765.191229 eV Total energy + Delta-G solvation = -3966.006891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26775 -40.66219 -38.66709 -37.78837 -37.43470 -36.52735 -36.11436 -33.83818 -32.57051 -31.00704 -29.62886 -29.04167 -27.94448 -26.85401 -24.78699 -23.13134 -22.45331 -20.82391 -19.76447 -19.22729 -18.31868 -18.02616 -18.01972 -17.21898 -16.72682 -16.50955 -16.33183 -16.06173 -15.84886 -15.40938 -15.16831 -14.93829 -14.72688 -14.62346 -14.26747 -14.18789 -13.82460 -13.43885 -13.30406 -13.15401 -13.01519 -12.98623 -12.85002 -12.57339 -12.47310 -12.31237 -12.16313 -12.12590 -12.04463 -11.77668 -11.60428 -11.11684 -10.97301 -10.46765 -9.92761 -9.47112 -8.41115 -8.20239 -5.96540 0.24612 0.46676 1.22798 1.39775 1.48911 1.58409 1.80777 2.04242 2.23624 2.26739 2.36955 2.49313 2.70486 2.99898 3.22022 3.60229 3.81096 3.83249 4.02916 4.09074 4.14741 4.27091 4.41645 4.46093 4.48756 4.50278 4.68652 4.70326 4.80569 4.85110 4.90081 4.95187 4.95593 5.24915 5.35047 5.49255 5.58322 6.01787 6.03181 6.39058 6.50277 6.83403 7.01149 7.11999 7.35032 7.90900 8.62572 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.002632 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.670449 B =10636.187576 C =12223.859096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.054 3.946 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.030 4.030 7 Cl -0.078 7.078 8 C -0.178 4.178 9 C 0.195 3.805 10 N -0.733 5.733 11 C 0.156 3.844 12 C -0.132 4.132 13 C 0.453 3.547 14 O -0.615 6.615 15 N -0.453 5.453 16 C -0.342 4.342 17 H 0.083 0.917 18 C 0.007 3.993 19 N -0.892 5.892 20 Si 0.985 3.015 21 H -0.258 1.258 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.220 3.780 25 C 0.258 3.742 26 N -0.508 5.508 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.412 0.588 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.937 7.055 6.990 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.005 3.995 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.057 4.057 7 Cl -0.049 7.049 8 C -0.202 4.202 9 C 0.090 3.910 10 N -0.365 5.365 11 C 0.031 3.969 12 C -0.172 4.172 13 C 0.242 3.758 14 O -0.501 6.501 15 N -0.173 5.173 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.195 4.195 19 N -0.530 5.530 20 Si 0.810 3.190 21 H -0.183 1.183 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.094 3.906 25 C -0.060 4.060 26 N -0.189 5.189 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.184 0.816 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.248 0.752 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.627 6.923 5.347 22.405 hybrid contribution 1.390 -0.102 0.082 1.396 sum -19.237 6.821 5.429 21.120 Atomic orbital electron populations 1.23319 0.76285 1.05424 1.02312 1.85988 1.23445 1.25830 1.89496 1.18591 0.89843 0.86117 1.04924 1.21221 1.01219 0.90099 1.04044 1.20830 0.91451 0.99018 1.03955 1.20608 0.93253 0.85694 1.06182 1.98354 1.81401 1.28089 1.97064 1.20385 1.00209 0.89685 1.09970 1.17137 0.87917 0.87313 0.98603 1.44442 1.04197 1.05789 1.82065 1.20734 0.79009 0.96049 1.01126 1.21624 0.91156 0.98683 1.05753 1.20748 0.89901 0.83835 0.81271 1.90543 1.74723 1.28997 1.55820 1.43786 1.05873 1.03864 1.63798 1.19629 0.81128 1.00290 1.45860 0.89953 1.25860 1.03587 0.95643 0.94458 1.69940 1.39589 1.11396 1.32100 0.85043 0.77487 0.78028 0.78458 1.18316 1.21381 1.20354 1.19112 0.99662 0.87284 0.84567 1.29714 0.88842 0.91650 0.95801 1.80839 1.14777 1.10278 1.12988 0.91726 0.86736 0.91394 0.81599 0.83005 0.85571 0.75159 0.93834 0.92079 0.85320 0.89060 0.91577 0.85844 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.28 9.74 -93.86 -0.91 -7.20 16 3 C 0.05 1.15 6.70 22.59 0.15 1.30 16 4 C -0.15 -2.48 9.04 22.34 0.20 -2.28 16 5 C -0.13 -2.46 9.82 22.31 0.22 -2.24 16 6 C -0.03 -0.71 6.32 22.32 0.14 -0.57 16 7 Cl -0.08 -1.80 28.95 -2.72 -0.08 -1.88 16 8 C -0.18 -4.79 9.09 22.40 0.20 -4.59 16 9 C 0.19 5.00 6.67 38.22 0.25 5.25 16 10 N -0.73 -18.63 5.73 -339.01 -1.94 -20.58 16 11 C 0.16 4.69 4.21 86.38 0.36 5.05 16 12 C -0.13 -3.95 4.42 29.85 0.13 -3.82 16 13 C 0.45 19.33 7.57 87.66 0.66 19.99 16 14 O -0.62 -31.53 15.63 -3.09 -0.05 -31.58 16 15 N -0.45 -20.09 2.60 -645.42 -1.68 -21.76 16 16 C -0.34 -17.36 9.32 84.04 0.78 -16.58 16 17 H 0.08 4.56 7.39 -2.91 -0.02 4.54 16 18 C 0.01 0.33 4.87 84.93 0.41 0.74 16 19 N -0.89 -43.63 9.48 21.66 0.21 -43.43 16 20 Si 0.99 39.52 29.60 68.60 2.03 41.55 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 24 C 0.22 7.88 4.91 84.57 0.42 8.29 16 25 C 0.26 10.66 12.94 89.46 1.16 11.82 16 26 N -0.51 -23.20 18.53 19.98 0.37 -22.83 16 27 H 0.06 0.50 7.65 -2.38 -0.02 0.49 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 30 H 0.17 1.65 6.29 -2.91 -0.02 1.63 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.13 3.72 6.74 -2.91 -0.02 3.70 16 33 H 0.41 9.21 7.84 -92.71 -0.73 8.48 16 34 H 0.04 1.51 7.91 -2.39 -0.02 1.49 16 35 H 0.06 1.94 7.91 -2.39 -0.02 1.93 16 36 H 0.13 2.83 7.42 -2.38 -0.02 2.82 16 37 H 0.09 2.69 7.51 -2.39 -0.02 2.67 16 38 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 39 H 0.12 4.60 6.46 -2.39 -0.02 4.58 16 40 H 0.14 3.38 6.68 -2.39 -0.02 3.36 16 Total: -1.00 -68.03 359.25 4.54 -63.50 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.38 Total: 20.51 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.21 Total: 23.69 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.05 Total: -108.60 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.96 Total: -38.78 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -68.03 4.54 -63.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.871 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds