Wall clock time and date at job start Tue Mar 31 2020 20:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00436 * 2 1 4 4 H 1.07995 * 120.00654 * 171.83233 * 3 2 1 5 5 C 1.38818 * 119.99874 * 351.82632 * 3 2 1 6 6 N 1.31620 * 119.99520 * 5.72620 * 5 3 2 7 7 Si 1.86790 * 120.00241 * 185.72295 * 5 3 2 8 8 H 1.48503 * 109.47300 * 60.00510 * 7 5 3 9 9 H 1.48504 * 109.47223 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47419 * 300.00369 * 7 5 3 11 11 C 1.46505 * 119.99951 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.46772 * 275.55584 * 11 2 1 13 13 N 1.30740 * 126.36759 * 93.77187 * 12 11 2 14 14 N 1.28414 * 110.65057 * 180.31707 * 13 12 11 15 15 N 1.28943 * 110.20398 * 359.72341 * 14 13 12 16 16 N 1.35068 * 126.36359 * 273.62282 * 12 11 2 17 17 C 1.40258 * 127.38877 * 359.97038 * 16 12 11 18 18 C 1.38822 * 120.06885 * 136.10899 * 17 16 12 19 19 C 1.38127 * 119.93785 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.06234 * 0.02562 * 19 18 17 21 21 S 1.76203 * 119.93241 * 179.97438 * 20 19 18 22 22 C 1.81402 * 104.44505 * 90.00354 * 21 20 19 23 23 O 1.42098 * 104.27590 * 206.07202 * 21 20 19 24 24 O 1.42098 * 104.27597 * 333.93278 * 21 20 19 25 25 C 1.38277 * 120.13096 * 0.25540 * 20 19 18 26 26 C 1.38123 * 120.06493 * 359.44314 * 25 20 19 27 27 H 1.09003 * 109.47085 * 183.71408 * 1 2 3 28 28 H 1.08995 * 109.47201 * 303.71273 * 1 2 3 29 29 H 1.09004 * 109.47027 * 63.71313 * 1 2 3 30 30 H 0.97004 * 119.99621 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46983 * 155.55689 * 11 2 1 32 32 H 1.09000 * 109.47543 * 35.55474 * 11 2 1 33 33 H 1.08002 * 120.02916 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.96577 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.46821 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.46938 * 299.99685 * 22 21 20 37 37 H 1.08997 * 109.47365 * 59.99902 * 22 21 20 38 38 H 1.08004 * 119.96480 * 179.70747 * 25 20 19 39 39 H 1.07997 * 120.03664 * 180.29643 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2215 1.1906 0.1329 5 6 1.4663 2.3820 -0.1709 6 7 0.1510 2.3871 -0.2200 7 14 2.4132 3.9841 -0.3312 8 1 3.3113 3.9124 -1.5117 9 1 1.4583 5.1084 -0.5027 10 1 3.2227 4.2054 0.8939 11 6 2.1975 -1.2688 -0.0006 12 6 2.3295 -1.7731 1.4134 13 7 1.5265 -2.6107 2.0158 14 7 1.9188 -2.8283 3.2190 15 7 2.9917 -2.1571 3.4658 16 7 3.3009 -1.4460 2.2929 17 6 4.3828 -0.5783 2.0832 18 6 4.7324 0.3458 3.0583 19 6 5.7979 1.1994 2.8487 20 6 6.5158 1.1344 1.6687 21 16 7.8741 2.2253 1.4047 22 6 9.3082 1.3298 2.0618 23 8 7.9623 2.3393 -0.0090 24 8 7.5782 3.3554 2.2138 25 6 6.1663 0.2188 0.6932 26 6 5.1057 -0.6415 0.8997 27 1 -0.3633 -1.0255 0.0666 28 1 -0.3633 0.5704 0.8548 29 1 -0.3633 0.4551 -0.9214 30 1 -0.3266 3.2229 -0.3398 31 1 3.1894 -1.1154 -0.4257 32 1 1.6551 -2.0012 -0.5984 33 1 4.1717 0.3973 3.9800 34 1 6.0706 1.9182 3.6073 35 1 10.2041 1.9384 1.9389 36 1 9.1529 1.1221 3.1205 37 1 9.4292 0.3910 1.5214 38 1 6.7260 0.1736 -0.2295 39 1 4.8361 -1.3596 0.1394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:11 Heat of formation + Delta-G solvation = 124.426348 kcal Electronic energy + Delta-G solvation = -27465.788636 eV Core-core repulsion = 23540.798388 eV Total energy + Delta-G solvation = -3924.990248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.69404 -39.49000 -37.25677 -36.24617 -36.07894 -34.79974 -32.61920 -31.30969 -30.94890 -30.35895 -29.71152 -27.18144 -26.19956 -24.67784 -23.43205 -22.19740 -21.90612 -20.68226 -19.28388 -18.34419 -17.72542 -17.16915 -16.53441 -16.38562 -15.91996 -15.29525 -14.95939 -14.84956 -14.71944 -14.05409 -13.84927 -13.62362 -13.60497 -13.51277 -13.49621 -13.23990 -12.83250 -12.22826 -12.18971 -12.13908 -11.81695 -11.76235 -11.57586 -11.32289 -11.16305 -10.94921 -10.88950 -10.85484 -10.56841 -10.44734 -10.30523 -10.13743 -9.73755 -9.22062 -9.05284 -8.84648 -7.41877 -6.00047 -3.41646 -0.17951 0.32839 1.11910 1.49065 2.10567 2.66180 2.73398 3.19290 3.27258 3.31243 3.34934 3.76241 3.89348 4.23465 4.43992 4.45509 4.46052 4.62048 4.66014 4.92751 5.04142 5.15560 5.18464 5.25286 5.30025 5.36409 5.49034 5.68408 5.77274 5.84117 5.89057 5.99272 6.04523 6.16543 6.42310 6.59486 6.85830 7.37235 7.43722 7.64973 8.00778 8.85578 8.89502 9.44306 9.84987 10.96013 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.005502 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.340303 B = 5088.168148 C = 7073.135418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.574 5.574 3 C -0.267 4.267 4 H 0.081 0.919 5 C 0.013 3.987 6 N -0.896 5.896 7 Si 0.904 3.096 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.276 1.276 11 C 0.206 3.794 12 C 0.255 3.745 13 N -0.343 5.343 14 N -0.042 5.042 15 N -0.109 5.109 16 N -0.345 5.345 17 C 0.211 3.789 18 C -0.119 4.119 19 C -0.005 4.005 20 C -0.665 4.665 21 S 2.499 3.501 22 C -0.651 4.651 23 O -0.933 6.933 24 O -0.934 6.934 25 C -0.001 4.001 26 C -0.133 4.133 27 H 0.007 0.993 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.259 0.741 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.062 -4.268 2.347 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.292 5.292 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.187 4.187 6 N -0.539 5.539 7 Si 0.732 3.268 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.202 1.202 11 C 0.072 3.928 12 C -0.025 4.025 13 N -0.195 5.195 14 N -0.037 5.037 15 N -0.094 5.094 16 N -0.136 5.136 17 C 0.118 3.882 18 C -0.140 4.140 19 C -0.025 4.025 20 C -0.752 4.752 21 S 2.678 3.322 22 C -0.800 4.800 23 O -0.930 6.930 24 O -0.932 6.932 25 C -0.021 4.021 26 C -0.154 4.154 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.299 -4.075 3.016 17.070 hybrid contribution 0.474 0.738 0.104 0.883 sum 16.774 -3.337 3.121 17.385 Atomic orbital electron populations 1.21286 0.80174 0.94599 1.02535 1.44454 1.03364 0.99729 1.81656 1.19397 0.91775 0.83525 1.44820 0.90131 1.24979 0.95756 0.98450 0.99510 1.70241 1.05414 1.26185 1.52034 0.86315 0.79089 0.82272 0.79138 1.19945 1.20955 1.20196 1.20002 0.99344 0.89666 0.83816 1.28955 0.83684 0.89665 1.00151 1.74435 1.25808 1.18263 1.00949 1.77873 1.03468 1.13920 1.08419 1.82506 1.13286 1.08628 1.05005 1.49051 1.20120 1.33391 1.11041 1.17618 0.86014 0.88927 0.95633 1.21093 0.98527 0.94465 0.99958 1.20757 0.92073 0.94805 0.94871 1.30538 1.22703 1.18700 1.03291 1.05226 0.76301 0.75354 0.75276 1.30245 1.19933 1.15783 1.14082 1.93602 1.86317 1.85366 1.27712 1.93599 1.83093 1.45749 1.70732 1.20731 0.94476 0.90036 0.96842 1.21147 0.95895 1.01877 0.96519 0.97474 0.93800 0.92438 0.93066 0.89759 0.89150 0.84187 0.83242 0.85094 0.84934 0.84887 0.82922 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 8.99 59.84 0.54 4.28 16 2 N -0.57 -13.20 2.92 -182.50 -0.53 -13.74 16 3 C -0.27 -6.64 9.78 -15.06 -0.15 -6.79 16 4 H 0.08 1.92 7.02 -52.49 -0.37 1.55 16 5 C 0.01 0.34 5.46 -17.43 -0.10 0.24 16 6 N -0.90 -24.42 9.47 55.49 0.53 -23.89 16 7 Si 0.90 21.18 29.56 -169.99 -5.02 16.15 16 8 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.21 3.80 5.83 -5.19 -0.03 3.77 16 12 C 0.25 4.93 7.55 -155.19 -1.17 3.76 16 13 N -0.34 -7.09 12.15 32.75 0.40 -6.69 16 14 N -0.04 -0.87 13.39 60.35 0.81 -0.06 16 15 N -0.11 -2.13 13.84 60.35 0.83 -1.29 16 16 N -0.34 -6.38 3.74 -7.97 -0.03 -6.41 16 17 C 0.21 3.43 6.16 -83.57 -0.52 2.92 16 18 C -0.12 -1.79 9.90 -39.41 -0.39 -2.18 16 19 C -0.01 -0.07 9.46 -39.61 -0.37 -0.44 16 20 C -0.66 -7.90 5.66 -39.55 -0.22 -8.13 16 21 S 2.50 25.14 5.80 -107.50 -0.62 24.51 16 22 C -0.65 -3.05 10.80 101.05 1.09 -1.96 16 23 O -0.93 -12.33 17.11 -57.54 -0.98 -13.32 16 24 O -0.93 -12.64 17.12 -57.54 -0.98 -13.62 16 25 C 0.00 -0.02 9.46 -39.61 -0.37 -0.39 16 26 C -0.13 -1.82 7.92 -39.41 -0.31 -2.13 16 27 H 0.01 0.14 7.90 -51.93 -0.41 -0.27 16 28 H 0.04 1.17 7.16 -51.93 -0.37 0.79 16 29 H 0.06 1.45 6.95 -51.93 -0.36 1.08 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 31 H 0.08 1.36 5.09 -51.93 -0.26 1.09 16 32 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 33 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.15 1.53 7.57 -52.49 -0.40 1.14 16 35 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.15 1.40 7.56 -52.48 -0.40 1.01 16 39 H 0.14 1.70 6.31 -52.49 -0.33 1.36 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.91 347.78 -6.52 -41.43 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.14 Total: -1.27 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.01 Total: -7.04 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 2.00 Total: -52.08 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.97 Total: -26.94 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 25.14 SS G_CDS: -0.62 Total: 24.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.91 -6.52 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.857 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds