Wall clock time and date at job start Tue Mar 31 2020 20:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00436 * 2 1 4 4 H 1.07995 * 120.00654 * 171.83233 * 3 2 1 5 5 C 1.38818 * 119.99874 * 351.82632 * 3 2 1 6 6 N 1.31620 * 119.99520 * 5.72620 * 5 3 2 7 7 Si 1.86790 * 120.00241 * 185.72295 * 5 3 2 8 8 H 1.48503 * 109.47300 * 60.00510 * 7 5 3 9 9 H 1.48504 * 109.47223 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47419 * 300.00369 * 7 5 3 11 11 C 1.46505 * 119.99951 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.46772 * 275.55584 * 11 2 1 13 13 N 1.30740 * 126.36759 * 93.77187 * 12 11 2 14 14 N 1.28414 * 110.65057 * 180.31707 * 13 12 11 15 15 N 1.28943 * 110.20398 * 359.72341 * 14 13 12 16 16 N 1.35068 * 126.36359 * 273.62282 * 12 11 2 17 17 C 1.40258 * 127.38877 * 359.97038 * 16 12 11 18 18 C 1.38822 * 120.06885 * 136.10899 * 17 16 12 19 19 C 1.38127 * 119.93785 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.06234 * 0.02562 * 19 18 17 21 21 S 1.76203 * 119.93241 * 179.97438 * 20 19 18 22 22 C 1.81402 * 104.44505 * 90.00354 * 21 20 19 23 23 O 1.42098 * 104.27590 * 206.07202 * 21 20 19 24 24 O 1.42098 * 104.27597 * 333.93278 * 21 20 19 25 25 C 1.38277 * 120.13096 * 0.25540 * 20 19 18 26 26 C 1.38123 * 120.06493 * 359.44314 * 25 20 19 27 27 H 1.09003 * 109.47085 * 183.71408 * 1 2 3 28 28 H 1.08995 * 109.47201 * 303.71273 * 1 2 3 29 29 H 1.09004 * 109.47027 * 63.71313 * 1 2 3 30 30 H 0.97004 * 119.99621 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46983 * 155.55689 * 11 2 1 32 32 H 1.09000 * 109.47543 * 35.55474 * 11 2 1 33 33 H 1.08002 * 120.02916 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.96577 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.46821 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.46938 * 299.99685 * 22 21 20 37 37 H 1.08997 * 109.47365 * 59.99902 * 22 21 20 38 38 H 1.08004 * 119.96480 * 179.70747 * 25 20 19 39 39 H 1.07997 * 120.03664 * 180.29643 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2215 1.1906 0.1329 5 6 1.4663 2.3820 -0.1709 6 7 0.1510 2.3871 -0.2200 7 14 2.4132 3.9841 -0.3312 8 1 3.3113 3.9124 -1.5117 9 1 1.4583 5.1084 -0.5027 10 1 3.2227 4.2054 0.8939 11 6 2.1975 -1.2688 -0.0006 12 6 2.3295 -1.7731 1.4134 13 7 1.5265 -2.6107 2.0158 14 7 1.9188 -2.8283 3.2190 15 7 2.9917 -2.1571 3.4658 16 7 3.3009 -1.4460 2.2929 17 6 4.3828 -0.5783 2.0832 18 6 4.7324 0.3458 3.0583 19 6 5.7979 1.1994 2.8487 20 6 6.5158 1.1344 1.6687 21 16 7.8741 2.2253 1.4047 22 6 9.3082 1.3298 2.0618 23 8 7.9623 2.3393 -0.0090 24 8 7.5782 3.3554 2.2138 25 6 6.1663 0.2188 0.6932 26 6 5.1057 -0.6415 0.8997 27 1 -0.3633 -1.0255 0.0666 28 1 -0.3633 0.5704 0.8548 29 1 -0.3633 0.4551 -0.9214 30 1 -0.3266 3.2229 -0.3398 31 1 3.1894 -1.1154 -0.4257 32 1 1.6551 -2.0012 -0.5984 33 1 4.1717 0.3973 3.9800 34 1 6.0706 1.9182 3.6073 35 1 10.2041 1.9384 1.9389 36 1 9.1529 1.1221 3.1205 37 1 9.4292 0.3910 1.5214 38 1 6.7260 0.1736 -0.2295 39 1 4.8361 -1.3596 0.1394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:11 Heat of formation + Delta-G solvation = 98.752113 kcal Electronic energy + Delta-G solvation = -27466.901954 eV Core-core repulsion = 23540.798388 eV Total energy + Delta-G solvation = -3926.103567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.25173 -40.61511 -38.15190 -37.92951 -36.98659 -36.19233 -34.28936 -32.71094 -32.34767 -31.53571 -30.21924 -28.80789 -28.06208 -26.05448 -24.67254 -23.73287 -23.29651 -22.22401 -20.16831 -19.58706 -19.03064 -18.65974 -17.92855 -17.15794 -17.13566 -16.86707 -16.34626 -16.02247 -15.93368 -15.53653 -15.26937 -14.89853 -14.80411 -14.76885 -14.28609 -13.97572 -13.89107 -13.68998 -13.46457 -13.35591 -13.13498 -13.07445 -12.95657 -12.79472 -12.72794 -12.42312 -12.27241 -12.15848 -12.08105 -12.05115 -11.91494 -11.68600 -11.35488 -10.76969 -10.28063 -10.24617 -9.27575 -7.90105 -5.38036 -0.97607 -0.77711 0.05924 0.08659 0.69376 1.14053 1.41037 1.43245 1.47175 1.84567 2.13116 2.38713 2.92790 3.02971 3.12059 3.24500 3.38112 3.50435 3.57776 3.65400 3.87870 4.05142 4.15723 4.16345 4.23185 4.28519 4.39346 4.52044 4.59178 4.63491 4.73338 4.77016 4.83297 5.01380 5.01480 5.25495 5.43600 5.51237 5.60572 5.74275 6.12607 6.98017 7.30413 7.63653 8.01806 9.06489 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.005502 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.340303 B = 5088.168148 C = 7073.135418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.594 5.594 3 C -0.261 4.261 4 H 0.090 0.910 5 C -0.039 4.039 6 N -0.932 5.932 7 Si 0.945 3.055 8 H -0.266 1.266 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.207 3.793 12 C 0.256 3.744 13 N -0.356 5.356 14 N -0.057 5.057 15 N -0.105 5.105 16 N -0.335 5.335 17 C 0.173 3.827 18 C -0.133 4.133 19 C -0.009 4.009 20 C -0.658 4.658 21 S 2.497 3.503 22 C -0.615 4.615 23 O -0.969 6.969 24 O -0.977 6.977 25 C -0.002 4.002 26 C -0.132 4.132 27 H 0.026 0.974 28 H 0.005 0.995 29 H 0.036 0.964 30 H 0.248 0.752 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.184 0.816 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.029 -5.349 2.317 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.314 5.314 3 C -0.390 4.390 4 H 0.107 0.893 5 C -0.235 4.235 6 N -0.579 5.579 7 Si 0.773 3.227 8 H -0.191 1.191 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.074 3.926 12 C -0.024 4.024 13 N -0.208 5.208 14 N -0.052 5.052 15 N -0.090 5.090 16 N -0.127 5.127 17 C 0.082 3.918 18 C -0.154 4.154 19 C -0.028 4.028 20 C -0.742 4.742 21 S 2.679 3.321 22 C -0.769 4.769 23 O -0.966 6.966 24 O -0.974 6.974 25 C -0.021 4.021 26 C -0.153 4.153 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.188 0.812 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.201 0.799 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 20.279 -5.173 2.994 21.141 hybrid contribution -0.359 0.892 0.262 0.997 sum 19.920 -4.281 3.257 20.633 Atomic orbital electron populations 1.20863 0.81208 0.94652 0.99778 1.44392 1.02945 1.00719 1.83337 1.19601 0.92163 0.84074 1.43151 0.89269 1.25536 0.96292 1.00668 1.00984 1.70394 1.06314 1.25672 1.55528 0.85671 0.78010 0.80167 0.78889 1.19137 1.21760 1.20747 1.20282 1.00675 0.88463 0.83143 1.28882 0.83638 0.89975 0.99860 1.74382 1.26090 1.19078 1.01222 1.77878 1.04040 1.14629 1.08673 1.82439 1.12933 1.08504 1.05163 1.49097 1.20432 1.32924 1.10229 1.18040 0.86314 0.90022 0.97446 1.21231 0.99365 0.95109 0.99726 1.21048 0.91332 0.94462 0.95960 1.31031 1.23075 1.17689 1.02416 1.05306 0.77319 0.75099 0.74350 1.29993 1.15630 1.16016 1.15282 1.93559 1.86980 1.86042 1.30053 1.93553 1.84431 1.48364 1.71054 1.21177 0.93909 0.89129 0.97877 1.21455 0.95764 1.02354 0.95772 0.95503 0.97598 0.94564 0.94166 0.87071 0.86846 0.84823 0.81166 0.82457 0.82537 0.82092 0.79857 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.99 127.77 1.15 9.86 16 2 N -0.59 -27.16 2.92 -731.31 -2.13 -29.29 16 3 C -0.26 -12.97 9.78 84.04 0.82 -12.15 16 4 H 0.09 4.15 7.02 -2.91 -0.02 4.13 16 5 C -0.04 -2.11 5.46 84.86 0.46 -1.65 16 6 N -0.93 -52.94 9.47 21.65 0.21 -52.74 16 7 Si 0.94 44.13 29.56 68.60 2.03 46.16 16 8 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 9 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 C 0.21 7.26 5.83 85.63 0.50 7.76 16 12 C 0.26 9.61 7.55 138.05 1.04 10.65 16 13 N -0.36 -14.44 12.15 -50.29 -0.61 -15.05 16 14 N -0.06 -2.33 13.39 37.02 0.50 -1.84 16 15 N -0.11 -4.02 13.84 37.02 0.51 -3.51 16 16 N -0.34 -12.02 3.74 -179.12 -0.67 -12.68 16 17 C 0.17 5.33 6.16 38.07 0.23 5.57 16 18 C -0.13 -3.85 9.90 22.38 0.22 -3.63 16 19 C -0.01 -0.21 9.46 22.25 0.21 0.00 16 20 C -0.66 -13.68 5.66 22.29 0.13 -13.55 16 21 S 2.50 42.32 5.80 -56.49 -0.33 41.99 16 22 C -0.61 -2.12 10.80 113.37 1.22 -0.89 16 23 O -0.97 -23.07 17.11 -127.65 -2.18 -25.26 16 24 O -0.98 -24.54 17.12 -127.65 -2.19 -26.72 16 25 C 0.00 -0.04 9.46 22.25 0.21 0.17 16 26 C -0.13 -3.25 7.92 22.38 0.18 -3.07 16 27 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 28 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 29 H 0.04 1.88 6.95 -2.38 -0.02 1.86 16 30 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.11 3.26 5.09 -2.39 -0.01 3.25 16 32 H 0.11 3.47 8.07 -2.39 -0.02 3.45 16 33 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.17 3.15 7.57 -2.91 -0.02 3.13 16 35 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.16 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.18 2.60 7.56 -2.91 -0.02 2.57 16 39 H 0.16 3.26 6.31 -2.91 -0.02 3.24 16 Total: -1.00 -79.27 347.78 2.61 -76.66 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.10 Total: 3.21 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.38 Total: -0.93 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -2.20 Total: -115.11 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -4.37 Total: -51.98 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.33 Total: 41.99 kcal Total: -79.27 2.61 -76.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.414 kcal (2) G-P(sol) polarization free energy of solvation -79.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds