Wall clock time and date at job start Tue Mar 31 2020 20:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46693 * 2 1 4 4 C 1.50694 * 109.47164 * 120.00358 * 2 1 3 5 5 H 1.08000 * 119.99973 * 120.00702 * 4 2 1 6 6 C 1.37878 * 120.00221 * 299.99832 * 4 2 1 7 7 N 1.31523 * 119.99637 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00321 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47097 * 90.00086 * 8 6 4 10 10 H 1.48494 * 109.47240 * 210.00066 * 8 6 4 11 11 H 1.48496 * 109.46972 * 330.00431 * 8 6 4 12 12 N 1.46500 * 109.47037 * 240.00558 * 2 1 3 13 13 C 1.34777 * 120.00181 * 84.99954 * 12 2 1 14 14 O 1.21558 * 119.99726 * 359.97438 * 13 12 2 15 15 C 1.47803 * 120.00006 * 179.97438 * 13 12 2 16 16 C 1.39642 * 120.09826 * 0.02562 * 15 13 12 17 17 C 1.37938 * 119.99867 * 180.23428 * 16 15 13 18 18 C 1.38386 * 120.20984 * 359.48425 * 17 16 15 19 19 Cl 1.73602 * 119.89824 * 180.23823 * 18 17 16 20 20 C 1.39078 * 120.20212 * 0.51310 * 18 17 16 21 21 N 1.40032 * 120.00302 * 179.76825 * 20 18 17 22 22 C 1.47050 * 125.41108 * 89.69837 * 21 20 18 23 23 C 1.54106 * 103.86367 * 179.86922 * 22 21 20 24 24 N 1.47050 * 103.86022 * 0.37239 * 23 22 21 25 25 C 1.33945 * 125.41011 * 269.99968 * 21 20 18 26 26 O 1.21586 * 123.04155 * 0.02562 * 25 21 20 27 27 C 1.38554 * 119.99236 * 359.74485 * 20 18 17 28 28 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46684 * 299.99347 * 1 2 3 30 30 H 1.08998 * 109.47137 * 60.00152 * 1 2 3 31 31 H 0.96993 * 119.99683 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99894 * 264.99818 * 12 2 1 33 33 H 1.08002 * 119.99717 * 359.94801 * 16 15 13 34 34 H 1.07996 * 119.89003 * 179.72183 * 17 16 15 35 35 H 1.08996 * 110.54662 * 298.59785 * 22 21 20 36 36 H 1.09007 * 110.54991 * 61.40341 * 22 21 20 37 37 H 1.09001 * 110.75518 * 241.67909 * 23 22 21 38 38 H 1.08998 * 110.33739 * 118.86488 * 23 22 21 39 39 H 0.96997 * 125.40816 * 179.75608 * 24 23 22 40 40 H 1.07999 * 120.10010 * 180.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3572 14 8 1.8575 1.1613 -2.4117 15 6 2.6403 -0.7146 -3.5639 16 6 2.9730 -2.0695 -3.5036 17 6 3.4377 -2.7163 -4.6298 18 6 3.5657 -2.0294 -5.8243 19 17 4.1455 -2.8530 -7.2383 20 6 3.2368 -0.6799 -5.8941 21 7 3.3726 0.0123 -7.1038 22 6 2.3315 0.1387 -8.1346 23 6 3.0000 0.9893 -9.2321 24 7 4.3498 1.2440 -8.7072 25 6 4.4732 0.6596 -7.5083 26 8 5.4923 0.7117 -6.8471 27 6 2.7743 -0.0205 -4.7667 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7082 1.1607 3.4844 32 1 2.2491 -1.6316 -1.1528 33 1 2.8708 -2.6097 -2.5740 34 1 3.6987 -3.7631 -4.5801 35 1 2.0560 -0.8420 -8.5224 36 1 1.4573 0.6524 -7.7346 37 1 2.4622 1.9264 -9.3758 38 1 3.0520 0.4297 -10.1661 39 1 5.0409 1.7542 -9.1576 40 1 2.5179 1.0273 -4.8190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079813235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:35 Heat of formation + Delta-G solvation = -22.620306 kcal Electronic energy + Delta-G solvation = -26191.466888 eV Core-core repulsion = 22225.763761 eV Total energy + Delta-G solvation = -3965.703127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51349 -39.81251 -38.22045 -36.59779 -36.53825 -34.89732 -34.51442 -32.48428 -31.11120 -30.38172 -29.05685 -28.45351 -25.29823 -24.09899 -23.73878 -23.20773 -21.53643 -20.68546 -19.43732 -18.41115 -17.61781 -17.03405 -16.77511 -16.43358 -15.91881 -15.54346 -15.07436 -14.91519 -14.48515 -14.31531 -14.25427 -14.00650 -13.96876 -13.33909 -13.18979 -12.89979 -12.73499 -12.54840 -12.36863 -11.89120 -11.77412 -11.51667 -11.13643 -11.09119 -10.99672 -10.78810 -10.47179 -10.34092 -10.26388 -9.63020 -9.31761 -9.18116 -9.10128 -9.04584 -8.87060 -8.58259 -7.99348 -6.15048 -4.24673 0.59195 0.99028 1.82461 2.21267 2.91037 2.93240 3.23965 3.30655 3.32035 3.54982 3.90161 3.96190 4.00923 4.34078 4.46620 4.59829 4.83550 4.87026 4.95292 5.06222 5.11099 5.17476 5.23763 5.32233 5.41627 5.59658 5.92326 5.98214 6.12115 6.27807 6.69646 6.78861 6.82872 6.91605 7.09986 7.15467 7.36442 7.50023 7.65142 7.86823 8.10730 8.35877 8.55682 8.72277 8.99357 9.42690 10.91022 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.002629 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.857714 B =10647.134087 C =11281.787362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.542 3.458 14 O -0.545 6.545 15 C -0.106 4.106 16 C -0.069 4.069 17 C -0.111 4.111 18 C -0.013 4.013 19 Cl -0.060 7.060 20 C 0.164 3.836 21 N -0.589 5.589 22 C 0.093 3.907 23 C 0.095 3.905 24 N -0.740 5.740 25 C 0.706 3.294 26 O -0.570 6.570 27 C -0.042 4.042 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.431 0.569 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -6.075 -24.525 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.327 3.673 14 O -0.425 6.425 15 C -0.110 4.110 16 C -0.088 4.088 17 C -0.130 4.130 18 C -0.042 4.042 19 Cl -0.031 7.031 20 C 0.072 3.928 21 N -0.324 5.324 22 C -0.029 4.029 23 C -0.030 4.030 24 N -0.403 5.403 25 C 0.407 3.593 26 O -0.445 6.445 27 C -0.062 4.062 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.273 0.727 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.589 -5.211 -24.035 24.644 hybrid contribution 0.635 -0.791 0.412 1.094 sum 2.224 -6.002 -23.623 24.474 Atomic orbital electron populations 1.22085 0.98225 0.99245 1.01040 1.18819 0.91162 0.94101 0.79676 0.93111 1.21196 1.32597 1.13352 0.90246 0.91983 1.24886 0.94736 0.94951 0.99083 1.69901 1.35707 1.22438 1.23967 0.86430 0.78639 0.79828 0.82105 1.20517 1.21056 1.19807 1.46506 1.64179 1.13575 1.10299 1.18054 0.79211 0.86816 0.83234 1.90749 1.51339 1.15451 1.84964 1.20329 1.01673 0.94135 0.94911 1.21470 0.95241 0.93481 0.98573 1.20910 1.00917 1.00892 0.90309 1.21469 1.00989 0.92177 0.89548 1.98363 1.87024 1.78068 1.39685 1.16516 1.03198 0.88289 0.84747 1.44050 1.14627 1.55791 1.17910 1.22530 0.91898 1.01219 0.87284 1.22356 0.83304 1.00190 0.97159 1.44997 1.16319 1.58704 1.20231 1.15784 0.83170 0.78531 0.81837 1.91013 1.29770 1.65599 1.58124 1.21407 0.94297 1.00871 0.89653 0.95345 0.89003 0.96560 0.92511 0.77759 0.83797 0.83776 0.89587 0.89330 0.89574 0.89803 0.72665 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.61 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.70 -14.26 5.02 -55.89 -0.28 -14.54 16 13 C 0.54 10.90 7.74 -12.35 -0.10 10.81 16 14 O -0.55 -13.05 16.01 5.31 0.09 -12.97 16 15 C -0.11 -1.67 5.87 -104.99 -0.62 -2.29 16 16 C -0.07 -0.86 9.54 -39.17 -0.37 -1.23 16 17 C -0.11 -1.23 9.80 -39.64 -0.39 -1.62 16 18 C -0.01 -0.16 6.34 -39.22 -0.25 -0.41 16 19 Cl -0.06 -0.66 28.42 -51.86 -1.47 -2.14 16 20 C 0.16 2.20 5.43 -83.68 -0.45 1.75 16 21 N -0.59 -6.92 2.34 -118.25 -0.28 -7.20 16 22 C 0.09 0.65 7.62 -3.16 -0.02 0.62 16 23 C 0.10 0.47 8.06 -3.16 -0.03 0.44 16 24 N -0.74 -6.31 6.37 -64.70 -0.41 -6.72 16 25 C 0.71 9.47 8.57 -88.40 -0.76 8.71 16 26 O -0.57 -10.45 17.65 5.29 0.09 -10.35 16 27 C -0.04 -0.63 9.51 -38.99 -0.37 -1.00 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.68 6.57 -40.82 -0.27 6.41 16 33 H 0.14 1.51 6.40 -52.49 -0.34 1.17 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.43 2.87 8.96 -40.82 -0.37 2.50 16 40 H 0.15 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -35.07 358.50 -9.42 -44.49 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.58 Total: 6.22 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -3.58 Total: 6.39 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.34 Total: -52.45 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.47 Total: -2.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.07 -9.42 -44.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.866 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds