Wall clock time and date at job start Tue Mar 31 2020 20:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46693 * 2 1 4 4 C 1.50694 * 109.47164 * 120.00358 * 2 1 3 5 5 H 1.08000 * 119.99973 * 120.00702 * 4 2 1 6 6 C 1.37878 * 120.00221 * 299.99832 * 4 2 1 7 7 N 1.31523 * 119.99637 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00321 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47097 * 90.00086 * 8 6 4 10 10 H 1.48494 * 109.47240 * 210.00066 * 8 6 4 11 11 H 1.48496 * 109.46972 * 330.00431 * 8 6 4 12 12 N 1.46500 * 109.47037 * 240.00558 * 2 1 3 13 13 C 1.34777 * 120.00181 * 84.99954 * 12 2 1 14 14 O 1.21558 * 119.99726 * 359.97438 * 13 12 2 15 15 C 1.47803 * 120.00006 * 179.97438 * 13 12 2 16 16 C 1.39642 * 120.09826 * 0.02562 * 15 13 12 17 17 C 1.37938 * 119.99867 * 180.23428 * 16 15 13 18 18 C 1.38386 * 120.20984 * 359.48425 * 17 16 15 19 19 Cl 1.73602 * 119.89824 * 180.23823 * 18 17 16 20 20 C 1.39078 * 120.20212 * 0.51310 * 18 17 16 21 21 N 1.40032 * 120.00302 * 179.76825 * 20 18 17 22 22 C 1.47050 * 125.41108 * 89.69837 * 21 20 18 23 23 C 1.54106 * 103.86367 * 179.86922 * 22 21 20 24 24 N 1.47050 * 103.86022 * 0.37239 * 23 22 21 25 25 C 1.33945 * 125.41011 * 269.99968 * 21 20 18 26 26 O 1.21586 * 123.04155 * 0.02562 * 25 21 20 27 27 C 1.38554 * 119.99236 * 359.74485 * 20 18 17 28 28 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46684 * 299.99347 * 1 2 3 30 30 H 1.08998 * 109.47137 * 60.00152 * 1 2 3 31 31 H 0.96993 * 119.99683 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99894 * 264.99818 * 12 2 1 33 33 H 1.08002 * 119.99717 * 359.94801 * 16 15 13 34 34 H 1.07996 * 119.89003 * 179.72183 * 17 16 15 35 35 H 1.08996 * 110.54662 * 298.59785 * 22 21 20 36 36 H 1.09007 * 110.54991 * 61.40341 * 22 21 20 37 37 H 1.09001 * 110.75518 * 241.67909 * 23 22 21 38 38 H 1.08998 * 110.33739 * 118.86488 * 23 22 21 39 39 H 0.96997 * 125.40816 * 179.75608 * 24 23 22 40 40 H 1.07999 * 120.10010 * 180.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3572 14 8 1.8575 1.1613 -2.4117 15 6 2.6403 -0.7146 -3.5639 16 6 2.9730 -2.0695 -3.5036 17 6 3.4377 -2.7163 -4.6298 18 6 3.5657 -2.0294 -5.8243 19 17 4.1455 -2.8530 -7.2383 20 6 3.2368 -0.6799 -5.8941 21 7 3.3726 0.0123 -7.1038 22 6 2.3315 0.1387 -8.1346 23 6 3.0000 0.9893 -9.2321 24 7 4.3498 1.2440 -8.7072 25 6 4.4732 0.6596 -7.5083 26 8 5.4923 0.7117 -6.8471 27 6 2.7743 -0.0205 -4.7667 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7082 1.1607 3.4844 32 1 2.2491 -1.6316 -1.1528 33 1 2.8708 -2.6097 -2.5740 34 1 3.6987 -3.7631 -4.5801 35 1 2.0560 -0.8420 -8.5224 36 1 1.4573 0.6524 -7.7346 37 1 2.4622 1.9264 -9.3758 38 1 3.0520 0.4297 -10.1661 39 1 5.0409 1.7542 -9.1576 40 1 2.5179 1.0273 -4.8190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079813235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:34 Heat of formation + Delta-G solvation = -47.503299 kcal Electronic energy + Delta-G solvation = -26192.545896 eV Core-core repulsion = 22225.763761 eV Total energy + Delta-G solvation = -3966.782135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38961 -41.14620 -39.55186 -37.57106 -37.53820 -36.77618 -35.41766 -34.34401 -32.33939 -31.46513 -30.38933 -29.50865 -27.34400 -25.36505 -24.73748 -23.86254 -22.90518 -22.11638 -20.99642 -19.59727 -18.69678 -18.12172 -17.93481 -17.49870 -17.19114 -17.17309 -16.37368 -16.06503 -15.85838 -15.80410 -15.26836 -15.01661 -14.88530 -14.81025 -14.45249 -14.33763 -13.75866 -13.69012 -13.30077 -13.15326 -12.99359 -12.91993 -12.86981 -12.77233 -12.53162 -12.25862 -12.12579 -12.03698 -11.59057 -11.12594 -10.99924 -10.60343 -10.53802 -10.19145 -10.03927 -9.76763 -9.73034 -8.17392 -6.35012 -0.52178 -0.03719 0.87168 1.37568 1.46654 1.47461 1.57862 1.68238 1.93068 2.29629 2.51524 2.59114 2.93642 3.13672 3.49460 3.56765 3.72869 3.90762 4.01028 4.04414 4.18017 4.32243 4.52664 4.64953 4.73324 4.85185 4.85782 4.88904 4.93323 4.96011 5.06517 5.08693 5.28308 5.41861 5.57108 5.67476 5.74149 5.88619 6.08507 6.12460 6.34588 6.71409 6.85279 7.29029 7.44248 7.44596 8.89168 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.002629 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.857714 B =10647.134087 C =11281.787362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.256 1.256 12 N -0.692 5.692 13 C 0.541 3.459 14 O -0.595 6.595 15 C -0.125 4.125 16 C -0.057 4.057 17 C -0.097 4.097 18 C -0.013 4.013 19 Cl -0.043 7.043 20 C 0.158 3.842 21 N -0.593 5.593 22 C 0.083 3.917 23 C 0.098 3.902 24 N -0.728 5.728 25 C 0.695 3.305 26 O -0.631 6.631 27 C -0.054 4.054 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.012 0.988 31 H 0.266 0.734 32 H 0.407 0.593 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.439 0.561 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -9.046 -26.237 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.180 1.180 12 N -0.341 5.341 13 C 0.329 3.671 14 O -0.477 6.477 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.116 4.116 18 C -0.042 4.042 19 Cl -0.014 7.014 20 C 0.067 3.933 21 N -0.327 5.327 22 C -0.037 4.037 23 C -0.026 4.026 24 N -0.390 5.390 25 C 0.395 3.605 26 O -0.512 6.512 27 C -0.074 4.074 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.283 0.717 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.835 -8.218 -25.829 27.167 hybrid contribution 0.542 0.152 0.779 0.961 sum 2.377 -8.066 -25.050 26.424 Atomic orbital electron populations 1.21903 0.97886 0.99814 0.99685 1.18424 0.91417 0.91952 0.81554 0.98358 1.21544 1.32675 1.13733 0.90582 0.90455 1.25807 0.94820 0.95582 1.02357 1.70056 1.36920 1.23974 1.24654 0.85330 0.77628 0.79355 0.77951 1.20642 1.20992 1.18008 1.46185 1.64275 1.14313 1.09282 1.18671 0.77953 0.86327 0.84159 1.90714 1.53374 1.17798 1.85849 1.19921 1.04408 0.95586 0.92958 1.21663 0.93976 0.91818 1.00111 1.21275 0.99023 1.02306 0.88960 1.21669 0.99967 0.91919 0.90669 1.98371 1.86689 1.77451 1.38858 1.16551 1.02787 0.89011 0.85001 1.44166 1.15381 1.55202 1.18000 1.22915 0.91276 1.02865 0.86662 1.22682 0.81081 1.01534 0.97256 1.45015 1.18027 1.57310 1.18652 1.16141 0.82752 0.78830 0.82736 1.90954 1.32145 1.67906 1.60162 1.21275 0.95532 1.00151 0.90488 0.93601 0.91359 0.96863 0.92529 0.75598 0.81499 0.80094 0.87861 0.88497 0.87153 0.86671 0.71713 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.95 2.56 44.25 0.11 14.06 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 4 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.22 16 8 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 12 N -0.69 -28.60 5.02 -449.01 -2.25 -30.85 16 13 C 0.54 22.58 7.74 86.77 0.67 23.25 16 14 O -0.59 -30.34 16.01 -3.90 -0.06 -30.41 16 15 C -0.12 -3.95 5.87 -20.10 -0.12 -4.07 16 16 C -0.06 -1.30 9.54 22.54 0.21 -1.08 16 17 C -0.10 -1.85 9.80 22.23 0.22 -1.63 16 18 C -0.01 -0.30 6.34 22.51 0.14 -0.16 16 19 Cl -0.04 -0.83 28.42 -2.72 -0.08 -0.91 16 20 C 0.16 4.18 5.43 38.11 0.21 4.39 16 21 N -0.59 -13.49 2.34 -646.75 -1.52 -15.01 16 22 C 0.08 0.99 7.62 86.65 0.66 1.65 16 23 C 0.10 0.67 8.06 86.65 0.70 1.37 16 24 N -0.73 -11.33 6.37 -477.34 -3.04 -14.37 16 25 C 0.69 18.46 8.57 179.57 1.54 20.00 16 26 O -0.63 -23.80 17.65 -3.99 -0.07 -23.87 16 27 C -0.05 -1.67 9.51 22.65 0.22 -1.46 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.41 13.52 6.57 -92.71 -0.61 12.91 16 33 H 0.17 2.97 6.40 -2.91 -0.02 2.95 16 34 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.44 5.27 8.96 -92.71 -0.83 4.43 16 40 H 0.13 4.37 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -81.23 358.50 0.82 -80.41 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -0.33 Total: 20.52 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 5.90 Total: 23.13 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -6.57 Total: -112.45 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.13 Total: -54.28 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -81.23 0.82 -80.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.902 kcal (2) G-P(sol) polarization free energy of solvation -81.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds