Wall clock time and date at job start Tue Mar 31 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47065 * 2 1 4 4 C 1.50708 * 109.46546 * 240.00005 * 2 1 3 5 5 H 1.07998 * 119.99804 * 239.99991 * 4 2 1 6 6 C 1.37872 * 119.99665 * 60.00500 * 4 2 1 7 7 N 1.31514 * 120.00294 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47221 * 89.99651 * 8 6 4 10 10 H 1.48498 * 109.47084 * 210.00513 * 8 6 4 11 11 H 1.48505 * 109.46926 * 329.99924 * 8 6 4 12 12 N 1.46500 * 109.46861 * 120.00493 * 2 1 3 13 13 C 1.34769 * 120.00046 * 274.99266 * 12 2 1 14 14 O 1.21556 * 120.00240 * 0.02562 * 13 12 2 15 15 C 1.47800 * 120.00009 * 180.02562 * 13 12 2 16 16 C 1.39635 * 120.10307 * 0.02562 * 15 13 12 17 17 C 1.37932 * 120.00838 * 179.97438 * 16 15 13 18 18 C 1.38387 * 120.20585 * 0.02562 * 17 16 15 19 19 Cl 1.73597 * 119.90001 * 179.97438 * 18 17 16 20 20 C 1.39085 * 120.20351 * 359.97150 * 18 17 16 21 21 N 1.40038 * 120.00453 * 179.72692 * 20 18 17 22 22 C 1.47044 * 125.40780 * 89.72119 * 21 20 18 23 23 C 1.54112 * 103.86153 * 179.86985 * 22 21 20 24 24 N 1.47051 * 103.85924 * 0.37710 * 23 22 21 25 25 C 1.33944 * 125.40924 * 270.02891 * 21 20 18 26 26 O 1.21595 * 123.04676 * 0.02562 * 25 21 20 27 27 C 1.38546 * 119.98921 * 0.02562 * 20 18 17 28 28 H 1.09004 * 109.46745 * 59.99367 * 1 2 3 29 29 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46650 * 300.00012 * 1 2 3 31 31 H 0.97006 * 119.99785 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99713 * 94.99437 * 12 2 1 33 33 H 1.08003 * 119.99669 * 359.97438 * 16 15 13 34 34 H 1.07995 * 119.90238 * 179.97438 * 17 16 15 35 35 H 1.08997 * 110.55368 * 298.59464 * 22 21 20 36 36 H 1.08996 * 110.55053 * 61.40687 * 22 21 20 37 37 H 1.08999 * 110.75686 * 241.67702 * 23 22 21 38 38 H 1.09003 * 110.33655 * 118.86664 * 23 22 21 39 39 H 0.97001 * 125.40939 * 179.75772 * 24 23 22 40 40 H 1.07999 * 120.09953 * 179.97438 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3222 -1.1195 -4.0081 9 1 1.3445 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8578 1.1609 2.4119 15 6 2.6403 -0.7152 3.5637 16 6 2.9738 -2.0698 3.5031 17 6 3.4344 -2.7179 4.6302 18 6 3.5670 -2.0300 5.8236 19 17 4.1468 -2.8537 7.2374 20 6 3.2374 -0.6806 5.8938 21 7 3.3678 0.0101 7.1050 22 6 4.5759 0.7156 7.5576 23 6 4.1753 1.2907 8.9301 24 7 2.7870 0.8401 9.1091 25 6 2.4138 0.1280 8.0377 26 8 1.3091 -0.3669 7.9227 27 6 2.7741 -0.0214 4.7667 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7087 1.1615 -3.4844 32 1 2.2489 -1.6319 1.1525 33 1 2.8712 -2.6101 2.5735 34 1 3.6915 -3.7657 4.5814 35 1 5.4092 0.0205 7.6603 36 1 4.8304 1.5200 6.8675 37 1 4.2263 2.3794 8.9226 38 1 4.8141 0.8821 9.7131 39 1 2.2299 1.0288 9.8805 40 1 2.5172 1.0263 4.8193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079813237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:38 Heat of formation + Delta-G solvation = -22.695416 kcal Electronic energy + Delta-G solvation = -26192.764687 eV Core-core repulsion = 22227.058303 eV Total energy + Delta-G solvation = -3965.706384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51406 -39.81241 -38.22019 -36.59808 -36.53877 -34.89629 -34.51472 -32.48775 -31.11078 -30.38195 -29.05398 -28.45007 -25.29429 -24.09881 -23.73733 -23.20786 -21.53547 -20.68482 -19.43619 -18.41149 -17.62046 -17.03366 -16.77528 -16.43011 -15.92182 -15.54147 -15.09658 -14.89810 -14.48613 -14.36567 -14.18331 -14.01924 -13.96642 -13.36379 -13.17790 -12.90749 -12.73598 -12.52966 -12.36949 -11.87835 -11.78062 -11.51620 -11.14649 -11.11049 -10.96859 -10.76780 -10.47630 -10.35812 -10.26343 -9.63209 -9.31619 -9.18127 -9.09066 -9.04461 -8.86991 -8.59334 -7.99115 -6.15307 -4.25157 0.59284 0.99100 1.82449 2.21234 2.90731 2.93333 3.22807 3.29719 3.31495 3.54852 3.91474 3.95105 4.00976 4.33514 4.46844 4.59895 4.83606 4.87274 4.95410 5.06569 5.11155 5.17028 5.23898 5.32505 5.41665 5.59688 5.92359 5.98275 6.12158 6.27836 6.69495 6.80498 6.82728 6.94263 7.11289 7.15311 7.36943 7.50531 7.64965 7.87066 8.11042 8.35584 8.55686 8.71877 8.99315 9.42221 10.90669 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002628 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.189650 B =10651.156713 C =11360.600689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.542 3.458 14 O -0.545 6.545 15 C -0.106 4.106 16 C -0.069 4.069 17 C -0.111 4.111 18 C -0.013 4.013 19 Cl -0.060 7.060 20 C 0.164 3.836 21 N -0.588 5.588 22 C 0.093 3.907 23 C 0.095 3.905 24 N -0.740 5.740 25 C 0.706 3.294 26 O -0.570 6.570 27 C -0.042 4.042 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.431 0.569 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -3.733 22.190 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.327 3.673 14 O -0.425 6.425 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.130 4.130 18 C -0.042 4.042 19 Cl -0.031 7.031 20 C 0.072 3.928 21 N -0.324 5.324 22 C -0.029 4.029 23 C -0.030 4.030 24 N -0.402 5.402 25 C 0.407 3.593 26 O -0.446 6.446 27 C -0.062 4.062 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.273 0.727 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.594 -3.140 21.977 24.184 hybrid contribution 0.375 -0.867 -0.351 1.007 sum 9.968 -4.007 21.626 24.147 Atomic orbital electron populations 1.22095 0.98233 0.99304 1.01076 1.18820 0.91180 0.94058 0.79656 0.93102 1.21194 1.32651 1.13314 0.90241 0.91990 1.24885 0.94769 0.94925 0.99078 1.69903 1.35734 1.22363 1.23969 0.86435 0.79170 0.79274 0.82147 1.20513 1.21055 1.19819 1.46506 1.64185 1.13567 1.10302 1.18049 0.79239 0.86832 0.83190 1.90748 1.51318 1.15523 1.84918 1.20329 1.01574 0.94183 0.94969 1.21466 0.95205 0.93446 0.98637 1.20908 1.01004 1.00750 0.90376 1.21470 1.01501 0.91907 0.89294 1.98363 1.86710 1.78176 1.39892 1.16517 1.03266 0.88505 0.84483 1.44048 1.14604 1.56360 1.17346 1.22531 0.88438 0.97020 0.94957 1.22360 0.83451 1.00588 0.96614 1.44997 1.15665 1.57927 1.21653 1.15784 0.83789 0.79367 0.80372 1.91012 1.20582 1.53350 1.79615 1.21406 0.93871 1.01212 0.89722 0.88996 0.95330 0.96517 0.92504 0.77760 0.83800 0.83776 0.89578 0.89313 0.89569 0.89801 0.72669 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.70 -14.27 5.02 -55.89 -0.28 -14.55 16 13 C 0.54 10.91 7.74 -12.35 -0.10 10.81 16 14 O -0.55 -13.06 16.01 5.32 0.09 -12.97 16 15 C -0.11 -1.68 5.87 -104.99 -0.62 -2.29 16 16 C -0.07 -0.85 9.53 -39.17 -0.37 -1.23 16 17 C -0.11 -1.24 9.80 -39.64 -0.39 -1.62 16 18 C -0.01 -0.16 6.34 -39.21 -0.25 -0.41 16 19 Cl -0.06 -0.66 28.42 -51.86 -1.47 -2.14 16 20 C 0.16 2.20 5.43 -83.68 -0.45 1.75 16 21 N -0.59 -6.92 2.34 -118.25 -0.28 -7.20 16 22 C 0.09 0.65 7.62 -3.16 -0.02 0.63 16 23 C 0.10 0.47 8.06 -3.16 -0.03 0.45 16 24 N -0.74 -6.28 6.37 -64.70 -0.41 -6.69 16 25 C 0.71 9.43 8.57 -88.40 -0.76 8.67 16 26 O -0.57 -10.39 17.66 5.28 0.09 -10.29 16 27 C -0.04 -0.63 9.51 -38.99 -0.37 -1.00 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.68 6.57 -40.82 -0.27 6.41 16 33 H 0.14 1.51 6.40 -52.48 -0.34 1.17 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.43 2.85 8.96 -40.82 -0.37 2.48 16 40 H 0.15 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -34.95 358.50 -9.42 -44.37 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.58 Total: 6.40 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -3.58 Total: 6.35 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.34 Total: -52.37 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.18 Total: -23.26 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.47 Total: -2.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.95 -9.42 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.676 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds