Wall clock time and date at job start Tue Mar 31 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47065 * 2 1 4 4 C 1.50708 * 109.46546 * 240.00005 * 2 1 3 5 5 H 1.07998 * 119.99804 * 239.99991 * 4 2 1 6 6 C 1.37872 * 119.99665 * 60.00500 * 4 2 1 7 7 N 1.31514 * 120.00294 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47221 * 89.99651 * 8 6 4 10 10 H 1.48498 * 109.47084 * 210.00513 * 8 6 4 11 11 H 1.48505 * 109.46926 * 329.99924 * 8 6 4 12 12 N 1.46500 * 109.46861 * 120.00493 * 2 1 3 13 13 C 1.34769 * 120.00046 * 274.99266 * 12 2 1 14 14 O 1.21556 * 120.00240 * 0.02562 * 13 12 2 15 15 C 1.47800 * 120.00009 * 180.02562 * 13 12 2 16 16 C 1.39635 * 120.10307 * 0.02562 * 15 13 12 17 17 C 1.37932 * 120.00838 * 179.97438 * 16 15 13 18 18 C 1.38387 * 120.20585 * 0.02562 * 17 16 15 19 19 Cl 1.73597 * 119.90001 * 179.97438 * 18 17 16 20 20 C 1.39085 * 120.20351 * 359.97150 * 18 17 16 21 21 N 1.40038 * 120.00453 * 179.72692 * 20 18 17 22 22 C 1.47044 * 125.40780 * 89.72119 * 21 20 18 23 23 C 1.54112 * 103.86153 * 179.86985 * 22 21 20 24 24 N 1.47051 * 103.85924 * 0.37710 * 23 22 21 25 25 C 1.33944 * 125.40924 * 270.02891 * 21 20 18 26 26 O 1.21595 * 123.04676 * 0.02562 * 25 21 20 27 27 C 1.38546 * 119.98921 * 0.02562 * 20 18 17 28 28 H 1.09004 * 109.46745 * 59.99367 * 1 2 3 29 29 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46650 * 300.00012 * 1 2 3 31 31 H 0.97006 * 119.99785 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99713 * 94.99437 * 12 2 1 33 33 H 1.08003 * 119.99669 * 359.97438 * 16 15 13 34 34 H 1.07995 * 119.90238 * 179.97438 * 17 16 15 35 35 H 1.08997 * 110.55368 * 298.59464 * 22 21 20 36 36 H 1.08996 * 110.55053 * 61.40687 * 22 21 20 37 37 H 1.08999 * 110.75686 * 241.67702 * 23 22 21 38 38 H 1.09003 * 110.33655 * 118.86664 * 23 22 21 39 39 H 0.97001 * 125.40939 * 179.75772 * 24 23 22 40 40 H 1.07999 * 120.09953 * 179.97438 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3222 -1.1195 -4.0081 9 1 1.3445 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8578 1.1609 2.4119 15 6 2.6403 -0.7152 3.5637 16 6 2.9738 -2.0698 3.5031 17 6 3.4344 -2.7179 4.6302 18 6 3.5670 -2.0300 5.8236 19 17 4.1468 -2.8537 7.2374 20 6 3.2374 -0.6806 5.8938 21 7 3.3678 0.0101 7.1050 22 6 4.5759 0.7156 7.5576 23 6 4.1753 1.2907 8.9301 24 7 2.7870 0.8401 9.1091 25 6 2.4138 0.1280 8.0377 26 8 1.3091 -0.3669 7.9227 27 6 2.7741 -0.0214 4.7667 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7087 1.1615 -3.4844 32 1 2.2489 -1.6319 1.1525 33 1 2.8712 -2.6101 2.5735 34 1 3.6915 -3.7657 4.5814 35 1 5.4092 0.0205 7.6603 36 1 4.8304 1.5200 6.8675 37 1 4.2263 2.3794 8.9226 38 1 4.8141 0.8821 9.7131 39 1 2.2299 1.0288 9.8805 40 1 2.5172 1.0263 4.8193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079813237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:38 Heat of formation + Delta-G solvation = -47.437183 kcal Electronic energy + Delta-G solvation = -26193.837571 eV Core-core repulsion = 22227.058303 eV Total energy + Delta-G solvation = -3966.779268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38898 -41.14716 -39.55232 -37.57081 -37.53518 -36.77786 -35.41758 -34.34272 -32.34000 -31.46723 -30.39329 -29.50873 -27.34754 -25.36620 -24.73739 -23.86340 -22.90681 -22.11835 -20.99754 -19.59600 -18.69657 -18.11863 -17.93518 -17.49462 -17.19650 -17.16739 -16.37611 -16.04995 -15.96185 -15.69020 -15.26961 -15.01472 -14.91361 -14.80811 -14.48381 -14.30895 -13.76559 -13.68369 -13.30259 -13.15738 -13.01252 -12.91119 -12.87947 -12.72386 -12.53631 -12.28987 -12.13073 -12.03953 -11.58821 -11.11480 -11.00220 -10.60339 -10.53658 -10.19186 -10.03965 -9.76904 -9.73104 -8.16762 -6.34651 -0.52155 -0.03707 0.87151 1.37546 1.47636 1.48164 1.58760 1.68261 1.93100 2.29881 2.51558 2.59390 2.93558 3.14266 3.49373 3.56707 3.72786 3.90720 4.00970 4.04410 4.17938 4.32283 4.52632 4.64955 4.71946 4.85068 4.85492 4.88526 4.92234 4.95888 5.06372 5.08165 5.28258 5.40941 5.57278 5.66569 5.74133 5.87782 6.07667 6.12533 6.34540 6.71732 6.85272 7.29273 7.44311 7.44766 8.89851 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002628 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.189650 B =10651.156713 C =11360.600689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.692 5.692 13 C 0.541 3.459 14 O -0.595 6.595 15 C -0.125 4.125 16 C -0.057 4.057 17 C -0.097 4.097 18 C -0.013 4.013 19 Cl -0.043 7.043 20 C 0.158 3.842 21 N -0.593 5.593 22 C 0.083 3.917 23 C 0.098 3.902 24 N -0.728 5.728 25 C 0.695 3.305 26 O -0.631 6.631 27 C -0.054 4.054 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.439 0.561 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -6.195 23.362 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.341 5.341 13 C 0.329 3.671 14 O -0.477 6.477 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.116 4.116 18 C -0.042 4.042 19 Cl -0.014 7.014 20 C 0.066 3.934 21 N -0.327 5.327 22 C -0.037 4.037 23 C -0.025 4.025 24 N -0.390 5.390 25 C 0.396 3.604 26 O -0.511 6.511 27 C -0.074 4.074 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.283 0.717 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.998 -5.613 23.206 26.720 hybrid contribution -0.288 -0.065 -0.570 0.641 sum 11.711 -5.677 22.636 26.111 Atomic orbital electron populations 1.21936 0.98345 0.99670 0.99582 1.18417 0.91085 0.92131 0.81613 0.98031 1.21535 1.32719 1.13700 0.90471 0.90312 1.25821 0.94837 0.95541 1.02413 1.70061 1.36994 1.23973 1.24659 0.85309 0.79088 0.77953 0.77780 1.19700 1.21446 1.18475 1.46184 1.64268 1.14314 1.09292 1.18669 0.77985 0.86346 0.84107 1.90713 1.53349 1.17879 1.85794 1.19920 1.04315 0.95631 0.93024 1.21661 0.93940 0.91770 1.00195 1.21274 0.99114 1.02147 0.89033 1.21671 1.00591 0.91564 0.90390 1.98371 1.86316 1.77576 1.39095 1.16551 1.02926 0.89308 0.84575 1.44164 1.15832 1.56307 1.16439 1.22910 0.87218 0.97418 0.96198 1.22680 0.81547 1.02128 0.96186 1.45013 1.17234 1.56327 1.20417 1.16137 0.83233 0.79581 0.81492 1.90954 1.23083 1.56023 1.81059 1.21275 0.95008 1.00554 0.90601 0.91239 0.93827 0.97215 0.92541 0.75590 0.81494 0.80087 0.87886 0.88539 0.87163 0.86674 0.71702 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.02 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.00 2.56 44.25 0.11 14.12 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.55 -28.28 8.73 25.60 0.22 -28.06 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.41 11.32 21.45 0.24 -52.16 16 8 Si 0.97 41.14 29.54 68.60 2.03 43.17 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.69 -28.61 5.02 -449.02 -2.25 -30.87 16 13 C 0.54 22.60 7.74 86.77 0.67 23.27 16 14 O -0.59 -30.37 16.01 -3.89 -0.06 -30.43 16 15 C -0.12 -3.96 5.87 -20.10 -0.12 -4.08 16 16 C -0.06 -1.30 9.53 22.53 0.21 -1.09 16 17 C -0.10 -1.85 9.80 22.23 0.22 -1.63 16 18 C -0.01 -0.30 6.34 22.51 0.14 -0.16 16 19 Cl -0.04 -0.83 28.42 -2.72 -0.08 -0.90 16 20 C 0.16 4.18 5.43 38.11 0.21 4.39 16 21 N -0.59 -13.49 2.34 -646.75 -1.52 -15.01 16 22 C 0.08 1.00 7.62 86.65 0.66 1.66 16 23 C 0.10 0.68 8.06 86.65 0.70 1.38 16 24 N -0.73 -11.27 6.37 -477.32 -3.04 -14.32 16 25 C 0.69 18.37 8.57 179.57 1.54 19.91 16 26 O -0.63 -23.60 17.66 -4.02 -0.07 -23.67 16 27 C -0.05 -1.67 9.51 22.65 0.22 -1.46 16 28 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.41 13.51 6.57 -92.70 -0.61 12.91 16 33 H 0.17 2.97 6.40 -2.91 -0.02 2.95 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.44 5.22 8.96 -92.71 -0.83 4.39 16 40 H 0.13 4.37 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -80.85 358.50 0.82 -80.03 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.33 Total: 21.07 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 5.90 Total: 23.09 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -6.57 Total: -112.35 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.13 Total: -54.10 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.90 kcal Total: -80.85 0.82 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.588 kcal (2) G-P(sol) polarization free energy of solvation -80.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds