Wall clock time and date at job start Tue Mar 31 2020 19:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46735 * 2 1 4 4 N 1.46501 * 109.46682 * 179.97438 * 3 2 1 5 5 C 1.36945 * 120.00099 * 275.96331 * 4 3 2 6 6 H 1.07996 * 119.99741 * 146.59317 * 5 4 3 7 7 C 1.38817 * 119.99734 * 326.59942 * 5 4 3 8 8 N 1.31617 * 119.99936 * 336.10715 * 7 5 4 9 9 Si 1.86798 * 119.99444 * 156.11399 * 7 5 4 10 10 H 1.48494 * 109.47660 * 59.99659 * 9 7 5 11 11 H 1.48504 * 109.46816 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47069 * 299.98969 * 9 7 5 13 13 S 1.65599 * 120.00198 * 95.96942 * 4 3 2 14 14 O 1.42104 * 106.40354 * 156.45950 * 13 4 3 15 15 O 1.42097 * 106.40180 * 23.53795 * 13 4 3 16 16 C 1.76198 * 107.21815 * 269.99803 * 13 4 3 17 17 C 1.38304 * 119.96653 * 270.02221 * 16 13 4 18 18 C 1.38254 * 120.12790 * 179.97438 * 17 16 13 19 19 C 1.38153 * 120.06572 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.93283 * 359.69754 * 19 18 17 21 21 N 1.40265 * 120.06574 * 180.30410 * 20 19 18 22 22 C 1.35066 * 127.38801 * 0.27315 * 21 20 19 23 23 N 1.30733 * 107.27411 * 179.97438 * 22 21 20 24 24 N 1.28422 * 110.64988 * 0.02562 * 23 22 21 25 25 N 1.28948 * 110.20190 * 359.72480 * 24 23 22 26 26 C 1.38104 * 119.97061 * 89.99614 * 16 13 4 27 27 H 1.09005 * 109.47477 * 60.00092 * 1 2 3 28 28 H 1.08998 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47260 * 300.00337 * 1 2 3 30 30 H 1.08992 * 109.47062 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.47100 * 119.99244 * 2 1 3 32 32 H 1.09001 * 109.47418 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.47449 * 299.99520 * 3 2 1 34 34 H 0.96996 * 119.99652 * 180.02562 * 8 7 5 35 35 H 1.07996 * 119.93751 * 0.02562 * 17 16 13 36 36 H 1.07994 * 119.96662 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.03185 * 179.97438 * 19 18 17 38 38 H 1.07998 * 126.36074 * 359.95665 * 22 21 20 39 39 H 1.08004 * 120.02940 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1891 1.3195 1.1805 6 1 5.1353 0.7993 1.2042 7 6 3.6665 1.8633 2.3458 8 7 2.8111 2.8614 2.2803 9 14 4.1775 1.1785 4.0070 10 1 5.6463 1.3223 4.1712 11 1 3.4836 1.9271 5.0856 12 1 3.8089 -0.2580 4.0848 13 16 4.3335 1.5914 -1.4254 14 8 5.6164 2.1041 -1.0924 15 8 3.4523 2.2339 -2.3363 16 6 4.5946 -0.0356 -2.0493 17 6 5.7341 -0.7358 -1.6972 18 6 5.9421 -2.0129 -2.1843 19 6 5.0119 -2.5930 -3.0251 20 6 3.8647 -1.8948 -3.3755 21 7 2.9153 -2.4836 -4.2238 22 6 2.9623 -3.7142 -4.7783 23 7 1.8790 -3.8584 -5.4957 24 7 1.1505 -2.8026 -5.4331 25 7 1.7081 -1.9212 -4.6748 26 6 3.6610 -0.6106 -2.8889 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.4462 3.2416 3.0946 35 1 6.4625 -0.2846 -1.0398 36 1 6.8326 -2.5575 -1.9074 37 1 5.1751 -3.5904 -3.4056 38 1 3.7489 -4.4435 -4.6526 39 1 2.7713 -0.0632 -3.1635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:10 Heat of formation + Delta-G solvation = 87.020853 kcal Electronic energy + Delta-G solvation = -27519.068448 eV Core-core repulsion = 23592.456176 eV Total energy + Delta-G solvation = -3926.612272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.39295 -39.63377 -36.40995 -36.16922 -35.31823 -34.83211 -32.70289 -32.57928 -31.44352 -30.98789 -30.32969 -25.96828 -25.32836 -24.36004 -23.77840 -22.46810 -22.02777 -20.73351 -19.50558 -18.39171 -17.22150 -16.80871 -16.73297 -16.54620 -16.38426 -15.69397 -15.56169 -14.74534 -14.43940 -14.16971 -13.98833 -13.71783 -13.54194 -13.37623 -12.97004 -12.77969 -12.31395 -12.04488 -11.90096 -11.76909 -11.75437 -11.56722 -11.25871 -11.22638 -11.10381 -10.96108 -10.85511 -10.72050 -10.67225 -10.51095 -10.44968 -10.13271 -9.87386 -9.51726 -9.15154 -8.91943 -7.83211 -6.36803 -4.05576 0.09151 0.67648 1.28310 1.40366 1.53242 2.04630 3.14780 3.18905 3.21087 3.23718 3.76064 3.94848 4.02377 4.30971 4.43365 4.54044 4.60239 4.63717 4.89739 4.93642 4.95625 5.14971 5.20388 5.44502 5.60846 5.69176 5.74688 5.79030 5.90383 5.92715 5.97047 6.09744 6.27722 6.42696 6.54268 6.55191 6.66299 6.80458 7.22466 7.32755 7.69658 8.17643 8.30506 8.88996 9.25840 10.64309 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004304 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.918304 B = 6504.687900 C = 7003.138620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.115 3.885 4 N -0.837 5.837 5 C -0.286 4.286 6 H 0.093 0.907 7 C 0.041 3.959 8 N -0.851 5.851 9 Si 0.916 3.084 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.274 1.274 13 S 2.620 3.380 14 O -0.965 6.965 15 O -0.989 6.989 16 C -0.631 4.631 17 C -0.006 4.006 18 C -0.118 4.118 19 C -0.081 4.081 20 C 0.097 3.903 21 N -0.320 5.320 22 C 0.220 3.780 23 N -0.332 5.332 24 N -0.038 5.038 25 N -0.068 5.068 26 C -0.003 4.003 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.270 0.730 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.238 0.762 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -12.556 -5.656 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.012 4.012 4 N -0.669 5.669 5 C -0.422 4.422 6 H 0.110 0.890 7 C -0.167 4.167 8 N -0.490 5.490 9 Si 0.742 3.258 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.199 1.199 13 S 2.716 3.284 14 O -0.955 6.955 15 O -0.979 6.979 16 C -0.712 4.712 17 C -0.026 4.026 18 C -0.137 4.137 19 C -0.102 4.102 20 C 0.005 3.995 21 N -0.110 5.110 22 C -0.077 4.077 23 N -0.181 5.181 24 N -0.033 5.033 25 N -0.053 5.053 26 C -0.024 4.024 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.254 0.746 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.562 -11.305 -6.725 13.401 hybrid contribution 1.092 -1.297 1.198 2.076 sum 3.653 -12.602 -5.528 14.238 Atomic orbital electron populations 1.21683 0.96494 1.00530 1.01736 1.21948 0.94826 0.99680 1.01235 1.21516 0.79818 0.94803 1.05088 1.52619 1.11690 1.85350 1.17223 1.19073 1.07134 1.32390 0.83644 0.88959 1.25340 0.97585 0.94104 0.99674 1.69954 1.30128 1.19597 1.29301 0.86179 0.79098 0.79136 0.81378 1.19611 1.20861 1.19912 1.05546 0.74428 0.73438 0.75029 1.93453 1.42730 1.75755 1.83538 1.93441 1.65928 1.71832 1.66694 1.31831 1.01581 1.28318 1.09514 1.21242 0.94422 0.93093 0.93843 1.21161 0.99443 0.95641 0.97459 1.21014 0.91773 0.99667 0.97737 1.17592 0.89685 0.95011 0.97232 1.49078 1.16283 1.12160 1.33454 1.27376 0.99543 0.88114 0.92668 1.74459 1.03088 1.19064 1.21536 1.78092 1.19940 0.95452 1.09844 1.82800 0.91543 1.18735 1.12221 1.20706 0.98386 0.91672 0.91649 0.92998 0.93749 0.92601 0.94118 0.91415 0.86366 0.92067 0.91978 0.82996 0.83659 0.84461 0.74599 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.52 6.22 -26.73 -0.17 -2.68 16 3 C 0.11 2.47 5.29 -4.04 -0.02 2.45 16 4 N -0.84 -19.08 2.85 -59.90 -0.17 -19.25 16 5 C -0.29 -6.83 8.87 -15.05 -0.13 -6.97 16 6 H 0.09 2.09 7.94 -52.49 -0.42 1.67 16 7 C 0.04 1.00 4.98 -17.43 -0.09 0.91 16 8 N -0.85 -21.57 11.27 55.49 0.63 -20.94 16 9 Si 0.92 18.69 29.62 -169.99 -5.03 13.65 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 S 2.62 56.57 5.65 -107.50 -0.61 55.97 16 14 O -0.97 -22.99 16.49 -57.17 -0.94 -23.94 16 15 O -0.99 -23.15 15.82 -57.17 -0.90 -24.06 16 16 C -0.63 -10.66 5.97 -39.61 -0.24 -10.90 16 17 C -0.01 -0.09 9.52 -39.55 -0.38 -0.47 16 18 C -0.12 -1.17 10.04 -39.61 -0.40 -1.57 16 19 C -0.08 -0.75 9.49 -39.41 -0.37 -1.13 16 20 C 0.10 1.25 6.70 -83.57 -0.56 0.69 16 21 N -0.32 -4.10 3.85 -11.74 -0.05 -4.14 16 22 C 0.22 2.15 12.16 -90.16 -1.10 1.06 16 23 N -0.33 -4.35 12.15 29.64 0.36 -3.99 16 24 N -0.04 -0.59 13.39 60.35 0.81 0.22 16 25 N -0.07 -1.07 13.34 60.35 0.80 -0.26 16 26 C 0.00 -0.05 8.17 -39.41 -0.32 -0.37 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.71 7.11 -51.93 -0.37 0.34 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.12 2.78 5.31 -51.93 -0.28 2.50 16 33 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 34 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.66 6.88 -52.49 -0.36 0.29 16 38 H 0.24 0.87 7.19 -52.49 -0.38 0.49 16 39 H 0.15 2.63 7.33 -52.48 -0.38 2.24 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -31.88 348.31 -7.45 -39.34 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.19 Total: 3.08 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.40 Total: -20.92 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 2.38 Total: -48.37 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.85 Total: -48.00 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: 56.57 SS G_CDS: -0.61 Total: 55.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.88 -7.45 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.358 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds