Wall clock time and date at job start Tue Mar 31 2020 19:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46735 * 2 1 4 4 N 1.46501 * 109.46682 * 179.97438 * 3 2 1 5 5 C 1.36945 * 120.00099 * 275.96331 * 4 3 2 6 6 H 1.07996 * 119.99741 * 146.59317 * 5 4 3 7 7 C 1.38817 * 119.99734 * 326.59942 * 5 4 3 8 8 N 1.31617 * 119.99936 * 336.10715 * 7 5 4 9 9 Si 1.86798 * 119.99444 * 156.11399 * 7 5 4 10 10 H 1.48494 * 109.47660 * 59.99659 * 9 7 5 11 11 H 1.48504 * 109.46816 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47069 * 299.98969 * 9 7 5 13 13 S 1.65599 * 120.00198 * 95.96942 * 4 3 2 14 14 O 1.42104 * 106.40354 * 156.45950 * 13 4 3 15 15 O 1.42097 * 106.40180 * 23.53795 * 13 4 3 16 16 C 1.76198 * 107.21815 * 269.99803 * 13 4 3 17 17 C 1.38304 * 119.96653 * 270.02221 * 16 13 4 18 18 C 1.38254 * 120.12790 * 179.97438 * 17 16 13 19 19 C 1.38153 * 120.06572 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.93283 * 359.69754 * 19 18 17 21 21 N 1.40265 * 120.06574 * 180.30410 * 20 19 18 22 22 C 1.35066 * 127.38801 * 0.27315 * 21 20 19 23 23 N 1.30733 * 107.27411 * 179.97438 * 22 21 20 24 24 N 1.28422 * 110.64988 * 0.02562 * 23 22 21 25 25 N 1.28948 * 110.20190 * 359.72480 * 24 23 22 26 26 C 1.38104 * 119.97061 * 89.99614 * 16 13 4 27 27 H 1.09005 * 109.47477 * 60.00092 * 1 2 3 28 28 H 1.08998 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47260 * 300.00337 * 1 2 3 30 30 H 1.08992 * 109.47062 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.47100 * 119.99244 * 2 1 3 32 32 H 1.09001 * 109.47418 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.47449 * 299.99520 * 3 2 1 34 34 H 0.96996 * 119.99652 * 180.02562 * 8 7 5 35 35 H 1.07996 * 119.93751 * 0.02562 * 17 16 13 36 36 H 1.07994 * 119.96662 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.03185 * 179.97438 * 19 18 17 38 38 H 1.07998 * 126.36074 * 359.95665 * 22 21 20 39 39 H 1.08004 * 120.02940 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1891 1.3195 1.1805 6 1 5.1353 0.7993 1.2042 7 6 3.6665 1.8633 2.3458 8 7 2.8111 2.8614 2.2803 9 14 4.1775 1.1785 4.0070 10 1 5.6463 1.3223 4.1712 11 1 3.4836 1.9271 5.0856 12 1 3.8089 -0.2580 4.0848 13 16 4.3335 1.5914 -1.4254 14 8 5.6164 2.1041 -1.0924 15 8 3.4523 2.2339 -2.3363 16 6 4.5946 -0.0356 -2.0493 17 6 5.7341 -0.7358 -1.6972 18 6 5.9421 -2.0129 -2.1843 19 6 5.0119 -2.5930 -3.0251 20 6 3.8647 -1.8948 -3.3755 21 7 2.9153 -2.4836 -4.2238 22 6 2.9623 -3.7142 -4.7783 23 7 1.8790 -3.8584 -5.4957 24 7 1.1505 -2.8026 -5.4331 25 7 1.7081 -1.9212 -4.6748 26 6 3.6610 -0.6106 -2.8889 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.4462 3.2416 3.0946 35 1 6.4625 -0.2846 -1.0398 36 1 6.8326 -2.5575 -1.9074 37 1 5.1751 -3.5904 -3.4056 38 1 3.7489 -4.4435 -4.6526 39 1 2.7713 -0.0632 -3.1635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:09 Heat of formation + Delta-G solvation = 65.054768 kcal Electronic energy + Delta-G solvation = -27520.020969 eV Core-core repulsion = 23592.456176 eV Total energy + Delta-G solvation = -3927.564793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.34759 -40.62802 -38.16940 -37.91781 -36.67076 -36.29809 -34.32150 -33.55162 -32.71358 -32.45023 -31.32510 -27.64988 -26.29230 -25.55881 -25.30007 -23.47170 -23.03534 -22.27855 -20.73027 -19.98726 -18.85640 -18.23125 -17.77130 -17.71568 -17.55274 -16.94901 -16.72883 -16.37742 -15.99399 -15.55098 -15.16528 -15.02833 -14.73277 -14.52514 -14.38817 -13.79518 -13.63453 -13.40650 -13.35354 -13.25641 -13.06065 -13.03714 -12.85082 -12.79711 -12.59900 -12.44655 -12.22151 -12.18826 -12.13847 -11.92496 -11.72085 -11.69525 -11.43606 -10.91867 -10.54732 -9.92384 -9.62084 -8.17576 -5.92699 -0.83250 -0.47114 -0.24750 0.42725 0.63355 1.14348 1.52537 1.54469 1.62235 2.15172 2.40160 2.65213 2.86292 2.96241 3.15756 3.26365 3.47064 3.56132 3.80530 3.85934 3.91885 4.14445 4.18806 4.28334 4.30890 4.34084 4.49332 4.56367 4.64842 4.82659 4.97169 4.99588 5.02597 5.08461 5.17135 5.19243 5.26070 5.49946 5.60618 5.63126 5.91780 6.48552 7.09112 7.21344 7.43687 8.84041 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004304 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.918304 B = 6504.687900 C = 7003.138620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.113 3.887 4 N -0.850 5.850 5 C -0.305 4.305 6 H 0.100 0.900 7 C -0.003 4.003 8 N -0.890 5.890 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.261 1.261 13 S 2.626 3.374 14 O -0.999 6.999 15 O -1.024 7.024 16 C -0.644 4.644 17 C -0.021 4.021 18 C -0.096 4.096 19 C -0.048 4.048 20 C 0.095 3.905 21 N -0.327 5.327 22 C 0.248 3.752 23 N -0.355 5.355 24 N -0.058 5.058 25 N -0.111 5.111 26 C -0.027 4.027 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.150 0.850 36 H 0.199 0.801 37 H 0.204 0.796 38 H 0.305 0.695 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -17.497 -5.942 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.014 4.014 4 N -0.681 5.681 5 C -0.440 4.440 6 H 0.118 0.882 7 C -0.207 4.207 8 N -0.531 5.531 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.186 1.186 13 S 2.729 3.271 14 O -0.989 6.989 15 O -1.013 7.013 16 C -0.733 4.733 17 C -0.041 4.041 18 C -0.115 4.115 19 C -0.068 4.068 20 C 0.003 3.997 21 N -0.117 5.117 22 C -0.047 4.047 23 N -0.205 5.205 24 N -0.053 5.053 25 N -0.097 5.097 26 C -0.049 4.049 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.216 0.784 37 H 0.221 0.779 38 H 0.320 0.680 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.791 -16.177 -6.966 18.253 hybrid contribution 0.483 0.078 1.094 1.198 sum 5.274 -16.099 -5.872 17.929 Atomic orbital electron populations 1.21661 0.94575 1.01998 1.01809 1.21819 0.96441 0.97190 1.01180 1.21469 0.79794 0.96769 1.03361 1.52680 1.12061 1.85875 1.17528 1.19380 1.07439 1.32854 0.84373 0.88233 1.26169 0.97644 0.94078 1.02858 1.70078 1.31911 1.21089 1.29977 0.85237 0.78729 0.78863 0.77073 1.19100 1.21264 1.18572 1.04454 0.73283 0.75125 0.74270 1.93402 1.43398 1.78079 1.84034 1.93394 1.66679 1.74372 1.66902 1.30741 1.04353 1.25840 1.12330 1.21486 0.93158 0.95084 0.94401 1.21725 1.00820 0.93477 0.95457 1.21770 0.88670 1.01476 0.94929 1.17745 0.90846 0.94060 0.97070 1.49086 1.15641 1.13104 1.33842 1.28640 0.99282 0.87294 0.89435 1.74396 1.04384 1.18748 1.22961 1.78091 1.20890 0.96190 1.10167 1.82800 0.93443 1.19929 1.13499 1.20483 0.97687 0.93670 0.93033 0.92907 0.91486 0.92621 0.93489 0.91915 0.88373 0.93396 0.92118 0.83205 0.78414 0.77871 0.68020 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.13 -4.78 6.22 30.59 0.19 -4.59 16 3 C 0.11 5.18 5.29 86.38 0.46 5.64 16 4 N -0.85 -40.79 2.85 -343.44 -0.98 -41.77 16 5 C -0.31 -15.09 8.87 84.03 0.75 -14.34 16 6 H 0.10 4.61 7.94 -2.91 -0.02 4.58 16 7 C 0.00 -0.15 4.98 84.86 0.42 0.28 16 8 N -0.89 -47.36 11.27 21.65 0.24 -47.11 16 9 Si 0.98 38.68 29.62 68.60 2.03 40.71 16 10 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 11 H -0.29 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 13 S 2.63 119.95 5.65 -56.49 -0.32 119.64 16 14 O -1.00 -50.03 16.49 -128.00 -2.11 -52.14 16 15 O -1.02 -51.70 15.82 -128.00 -2.03 -53.73 16 16 C -0.64 -21.79 5.97 22.25 0.13 -21.65 16 17 C -0.02 -0.54 9.52 22.29 0.21 -0.33 16 18 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 19 C -0.05 -0.56 9.49 22.38 0.21 -0.35 16 20 C 0.10 2.12 6.70 38.07 0.26 2.37 16 21 N -0.33 -7.34 3.85 -191.07 -0.74 -8.07 16 22 C 0.25 3.57 12.16 180.19 2.19 5.76 16 23 N -0.36 -8.29 12.15 -60.14 -0.73 -9.02 16 24 N -0.06 -1.76 13.39 37.02 0.50 -1.26 16 25 N -0.11 -3.45 13.34 37.02 0.49 -2.95 16 26 C -0.03 -0.86 8.17 22.38 0.18 -0.67 16 27 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.05 1.69 7.11 -2.39 -0.02 1.67 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 4.94 5.31 -2.39 -0.01 4.93 16 33 H 0.05 2.25 6.90 -2.39 -0.02 2.23 16 34 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.15 3.81 7.61 -2.91 -0.02 3.79 16 36 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.20 -0.27 6.88 -2.91 -0.02 -0.29 16 38 H 0.31 -0.50 7.19 -2.91 -0.02 -0.52 16 39 H 0.13 4.63 7.33 -2.91 -0.02 4.61 16 Total: -1.00 -79.08 348.31 3.40 -75.68 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.10 Total: 12.85 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 5.94 Total: -32.82 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -1.21 Total: -110.19 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -4.14 Total: -105.87 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 119.95 SS G_CDS: -0.32 Total: 119.64 kcal Total: -79.08 3.40 -75.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.735 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds