Wall clock time and date at job start Tue Mar 31 2020 20:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38302 * 119.96471 * 90.00268 * 17 14 12 19 19 C 1.38254 * 120.12596 * 179.97438 * 18 17 14 20 20 C 1.38139 * 120.06713 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.93880 * 359.97438 * 20 19 18 22 22 N 1.40258 * 120.07072 * 180.02562 * 21 20 19 23 23 C 1.35068 * 127.38752 * 5.00076 * 22 21 20 24 24 N 1.30735 * 107.27405 * 179.97438 * 23 22 21 25 25 N 1.28419 * 110.64848 * 359.97438 * 24 23 22 26 26 N 1.28946 * 110.20088 * 359.74590 * 25 24 23 27 27 C 1.38101 * 119.96846 * 269.72404 * 17 14 12 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.08004 * 119.93668 * 359.97438 * 18 17 14 36 36 H 1.08011 * 119.96699 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.03181 * 180.02562 * 20 19 18 38 38 H 1.08005 * 126.36060 * 359.93828 * 23 22 21 39 39 H 1.08002 * 120.03130 * 0.02572 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.3642 -1.1974 -2.2671 19 6 6.6781 -1.3827 -1.8788 20 6 7.2756 -0.4899 -1.0103 21 6 6.5558 0.5943 -0.5279 22 7 7.1598 1.5028 0.3536 23 6 8.4491 1.5214 0.7559 24 7 8.5858 2.5316 1.5743 25 7 7.4712 3.1534 1.7165 26 7 6.5549 2.5936 1.0025 27 6 5.2382 0.7810 -0.9241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 4.8990 -1.8970 -2.9458 36 1 7.2380 -2.2264 -2.2548 37 1 8.3021 -0.6349 -0.7077 38 1 9.2230 0.8297 0.4574 39 1 4.6768 1.6260 -0.5536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:09 Heat of formation + Delta-G solvation = 89.744098 kcal Electronic energy + Delta-G solvation = -27510.760485 eV Core-core repulsion = 23584.266301 eV Total energy + Delta-G solvation = -3926.494183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30039 -39.68748 -36.92364 -36.29035 -35.47907 -35.28673 -32.69301 -32.51009 -31.52296 -30.38108 -29.18189 -25.67579 -25.29610 -25.25187 -24.37141 -22.49230 -22.05715 -20.84686 -19.58659 -18.04354 -17.05280 -16.77509 -16.71968 -16.61785 -16.49259 -15.88055 -15.68487 -15.15505 -14.55233 -14.23183 -13.74725 -13.60862 -13.38064 -13.32564 -12.81994 -12.74731 -12.45596 -12.11304 -12.03631 -11.89279 -11.82958 -11.65927 -11.49688 -11.29916 -11.14408 -11.06161 -10.93763 -10.80869 -10.61656 -10.52441 -10.28714 -10.15536 -9.70310 -9.35662 -8.95771 -8.54299 -8.10284 -6.15832 -4.25128 0.08638 0.57921 0.85237 1.39420 1.60165 2.14731 3.07711 3.20448 3.27036 3.28066 3.51130 3.82027 3.98459 4.11296 4.29633 4.41503 4.47900 4.57747 4.77438 4.83207 5.13867 5.15190 5.17915 5.23977 5.47502 5.51939 5.73854 5.80791 5.87692 6.00096 6.05348 6.19647 6.50107 6.55687 6.78253 6.81117 7.02347 7.31884 7.52933 7.69860 7.96220 8.16672 8.28041 8.76788 9.41841 10.89177 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.006003 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.093728 B = 4663.084718 C = 6534.734497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.280 1.280 12 N -0.975 5.975 13 C 0.103 3.897 14 S 2.682 3.318 15 O -0.969 6.969 16 O -0.950 6.950 17 C -0.647 4.647 18 C -0.014 4.014 19 C -0.119 4.119 20 C -0.074 4.074 21 C 0.105 3.895 22 N -0.324 5.324 23 C 0.219 3.781 24 N -0.332 5.332 25 N -0.037 5.037 26 N -0.057 5.057 27 C 0.014 3.986 28 H 0.094 0.906 29 H 0.014 0.986 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.238 0.762 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 -6.839 -8.905 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.721 3.279 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.816 5.816 13 C -0.043 4.043 14 S 2.770 3.230 15 O -0.959 6.959 16 O -0.941 6.941 17 C -0.731 4.731 18 C -0.033 4.033 19 C -0.139 4.139 20 C -0.096 4.096 21 C 0.012 3.988 22 N -0.114 5.114 23 C -0.078 4.078 24 N -0.181 5.181 25 N -0.032 5.032 26 N -0.042 5.042 27 C -0.007 4.007 28 H 0.113 0.887 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.254 0.746 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.278 -5.049 -8.677 15.099 hybrid contribution 1.186 -1.655 0.966 2.254 sum 12.464 -6.705 -7.711 16.118 Atomic orbital electron populations 1.22052 0.97445 0.99843 1.00996 1.18844 0.92191 0.92844 0.79830 0.92067 1.21284 1.32444 1.13341 0.90133 0.92024 1.24883 0.94822 0.94893 0.98880 1.69845 1.35698 1.22239 1.24119 0.86640 0.79060 0.79748 0.82427 1.21029 1.20151 1.20550 1.57455 1.62264 1.21816 1.40097 1.21287 0.99281 0.81504 1.02264 1.02384 0.73152 0.74010 0.73497 1.93531 1.85737 1.75738 1.40897 1.93591 1.83207 1.31082 1.86183 1.31572 1.27598 1.03614 1.10315 1.21135 0.93921 0.93898 0.94380 1.21104 0.95361 0.99446 0.97968 1.21066 0.99919 0.92082 0.96502 1.17574 0.94362 0.91344 0.95492 1.49080 1.08340 1.21820 1.32169 1.27365 0.87319 0.98685 0.94454 1.74452 1.18652 1.06952 1.18022 1.78114 0.93955 1.18490 1.12620 1.82895 1.17961 0.95784 1.07605 1.20764 0.91860 0.97527 0.90574 0.88722 0.96660 0.94713 0.92386 0.93261 0.92976 0.89844 0.83343 0.83615 0.84272 0.74617 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.97 37.16 0.33 -2.93 16 2 C 0.27 6.17 2.62 -69.09 -0.18 5.99 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.53 -13.20 7.99 -34.44 -0.28 -13.47 16 5 H 0.06 1.48 7.33 -52.49 -0.38 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.98 -18.75 3.06 -115.85 -0.35 -19.10 16 13 C 0.10 1.64 9.28 59.85 0.56 2.19 16 14 S 2.68 48.53 5.64 -107.50 -0.61 47.92 16 15 O -0.97 -17.45 16.35 -57.17 -0.93 -18.38 16 16 O -0.95 -20.23 15.84 -57.17 -0.91 -21.13 16 17 C -0.65 -9.95 5.97 -39.61 -0.24 -10.19 16 18 C -0.01 -0.16 9.52 -39.55 -0.38 -0.54 16 19 C -0.12 -1.06 10.04 -39.61 -0.40 -1.46 16 20 C -0.07 -0.69 9.49 -39.41 -0.37 -1.06 16 21 C 0.11 1.42 6.70 -83.57 -0.56 0.86 16 22 N -0.32 -4.60 3.85 -11.74 -0.05 -4.65 16 23 C 0.22 2.39 12.15 -90.16 -1.10 1.30 16 24 N -0.33 -4.83 12.15 29.64 0.36 -4.47 16 25 N -0.04 -0.64 13.39 60.35 0.81 0.17 16 26 N -0.06 -1.03 13.35 60.35 0.81 -0.22 16 27 C 0.01 0.23 9.17 -39.41 -0.36 -0.14 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.67 7.79 -51.92 -0.40 0.27 16 34 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 35 H 0.15 1.45 7.61 -52.48 -0.40 1.05 16 36 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.14 0.67 6.91 -52.48 -0.36 0.31 16 38 H 0.24 1.04 7.22 -52.48 -0.38 0.66 16 39 H 0.16 2.94 7.33 -52.49 -0.38 2.55 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -33.30 347.54 -7.25 -40.55 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.15 Total: -0.33 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.06 Total: -17.75 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 2.20 Total: -51.54 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.84 Total: -39.51 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.61 Total: 47.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.30 -7.25 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.291 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds