Wall clock time and date at job start Tue Mar 31 2020 20:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38302 * 119.96471 * 90.00268 * 17 14 12 19 19 C 1.38254 * 120.12596 * 179.97438 * 18 17 14 20 20 C 1.38139 * 120.06713 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.93880 * 359.97438 * 20 19 18 22 22 N 1.40258 * 120.07072 * 180.02562 * 21 20 19 23 23 C 1.35068 * 127.38752 * 5.00076 * 22 21 20 24 24 N 1.30735 * 107.27405 * 179.97438 * 23 22 21 25 25 N 1.28419 * 110.64848 * 359.97438 * 24 23 22 26 26 N 1.28946 * 110.20088 * 359.74590 * 25 24 23 27 27 C 1.38101 * 119.96846 * 269.72404 * 17 14 12 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.08004 * 119.93668 * 359.97438 * 18 17 14 36 36 H 1.08011 * 119.96699 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.03181 * 180.02562 * 20 19 18 38 38 H 1.08005 * 126.36060 * 359.93828 * 23 22 21 39 39 H 1.08002 * 120.03130 * 0.02572 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.3642 -1.1974 -2.2671 19 6 6.6781 -1.3827 -1.8788 20 6 7.2756 -0.4899 -1.0103 21 6 6.5558 0.5943 -0.5279 22 7 7.1598 1.5028 0.3536 23 6 8.4491 1.5214 0.7559 24 7 8.5858 2.5316 1.5743 25 7 7.4712 3.1534 1.7165 26 7 6.5549 2.5936 1.0025 27 6 5.2382 0.7810 -0.9241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 4.8990 -1.8970 -2.9458 36 1 7.2380 -2.2264 -2.2548 37 1 8.3021 -0.6349 -0.7077 38 1 9.2230 0.8297 0.4574 39 1 4.6768 1.6260 -0.5536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:08 Heat of formation + Delta-G solvation = 65.525419 kcal Electronic energy + Delta-G solvation = -27511.810685 eV Core-core repulsion = 23584.266301 eV Total energy + Delta-G solvation = -3927.544384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.37184 -40.62633 -38.42526 -37.93789 -36.98044 -36.32727 -34.55527 -33.57747 -32.46842 -31.36686 -30.95253 -27.28785 -27.02937 -26.32297 -25.38508 -23.48207 -23.11429 -22.59487 -20.68121 -19.43435 -18.57717 -18.35187 -17.80318 -17.74339 -17.59679 -17.23758 -16.76663 -16.66403 -16.05561 -15.26111 -15.05353 -14.94265 -14.69010 -14.46567 -14.39944 -13.82735 -13.76694 -13.46840 -13.43591 -13.27858 -13.20561 -13.01097 -12.88525 -12.86942 -12.76358 -12.74364 -12.26737 -12.21655 -12.16979 -12.04229 -11.84784 -11.72787 -11.20632 -10.59170 -10.53399 -9.93508 -9.68994 -8.13762 -6.28075 -0.85065 -0.65452 -0.31381 0.41297 0.64925 1.11765 1.38254 1.38879 1.46327 1.93882 2.31431 2.40785 2.72547 2.91147 3.15355 3.23540 3.29681 3.57428 3.72928 3.84265 3.89884 4.08651 4.12465 4.24900 4.30387 4.57056 4.70404 4.80887 4.82212 4.95302 4.96775 4.99491 5.01805 5.13615 5.18655 5.27673 5.57712 5.63571 5.65967 5.81872 6.06040 6.24354 6.80714 7.18645 7.41381 8.90635 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.006003 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.093728 B = 4663.084718 C = 6534.734497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.272 3.728 3 H 0.022 0.978 4 C -0.528 4.528 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.291 1.291 10 H -0.259 1.259 11 H -0.281 1.281 12 N -0.985 5.985 13 C 0.093 3.907 14 S 2.689 3.311 15 O -0.970 6.970 16 O -0.999 6.999 17 C -0.661 4.661 18 C -0.016 4.016 19 C -0.098 4.098 20 C -0.048 4.048 21 C 0.088 3.912 22 N -0.328 5.328 23 C 0.247 3.753 24 N -0.356 5.356 25 N -0.061 5.061 26 N -0.115 5.115 27 C -0.024 4.024 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.204 0.796 37 H 0.201 0.799 38 H 0.309 0.691 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.946 -11.178 -10.090 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.568 4.568 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.217 1.217 10 H -0.184 1.184 11 H -0.207 1.207 12 N -0.825 5.825 13 C -0.052 4.052 14 S 2.782 3.218 15 O -0.960 6.960 16 O -0.990 6.990 17 C -0.750 4.750 18 C -0.036 4.036 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.005 4.005 22 N -0.118 5.118 23 C -0.048 4.048 24 N -0.205 5.205 25 N -0.057 5.057 26 N -0.100 5.100 27 C -0.045 4.045 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.189 0.811 36 H 0.221 0.779 37 H 0.218 0.782 38 H 0.323 0.677 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.120 -9.413 -9.899 20.377 hybrid contribution 0.148 -0.388 1.203 1.273 sum 15.268 -9.800 -8.696 20.119 Atomic orbital electron populations 1.21931 0.97415 1.00382 1.00035 1.18422 0.92238 0.91302 0.81270 0.96052 1.21574 1.31557 1.13120 0.90514 0.91065 1.25645 0.95278 0.95592 1.01726 1.70000 1.37330 1.23817 1.24283 0.85729 0.78176 0.79380 0.79038 1.21664 1.18380 1.20720 1.57292 1.63595 1.23020 1.38573 1.21551 1.01200 0.79739 1.02697 1.01701 0.74104 0.72765 0.73180 1.93512 1.86483 1.75366 1.40683 1.93529 1.84679 1.34051 1.86722 1.30860 1.25635 1.06010 1.12449 1.21605 0.95432 0.92486 0.94052 1.21794 0.93880 1.00081 0.95875 1.21824 1.01968 0.88970 0.94070 1.17893 0.93797 0.92741 0.96033 1.49140 1.09325 1.21189 1.32142 1.28667 0.86913 0.97681 0.91568 1.74355 1.18076 1.08396 1.19711 1.78094 0.94863 1.19510 1.13183 1.82877 1.19502 0.98178 1.09492 1.20513 0.93848 0.97410 0.92769 0.91318 0.96012 0.93245 0.92818 0.92397 0.89446 0.90330 0.81118 0.77870 0.78188 0.67678 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 8.97 71.98 0.65 -5.91 16 2 C 0.27 13.28 2.62 44.24 0.12 13.39 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.53 -26.77 7.99 25.60 0.20 -26.57 16 5 H 0.07 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 8 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 9 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 N -0.99 -38.58 3.06 -520.45 -1.59 -40.18 16 13 C 0.09 2.84 9.28 127.77 1.19 4.03 16 14 S 2.69 100.42 5.64 -56.49 -0.32 100.10 16 15 O -0.97 -34.37 16.35 -128.00 -2.09 -36.46 16 16 O -1.00 -46.42 15.84 -128.00 -2.03 -48.45 16 17 C -0.66 -19.99 5.97 22.25 0.13 -19.86 16 18 C -0.02 -0.31 9.52 22.29 0.21 -0.10 16 19 C -0.10 -1.04 10.04 22.25 0.22 -0.82 16 20 C -0.05 -0.57 9.49 22.38 0.21 -0.36 16 21 C 0.09 2.18 6.70 38.07 0.25 2.44 16 22 N -0.33 -8.89 3.85 -191.06 -0.74 -9.62 16 23 C 0.25 4.49 12.15 180.19 2.19 6.68 16 24 N -0.36 -9.90 12.15 -60.13 -0.73 -10.63 16 25 N -0.06 -2.21 13.39 37.02 0.50 -1.72 16 26 N -0.12 -4.33 13.35 37.02 0.49 -3.84 16 27 C -0.02 -0.80 9.17 22.38 0.21 -0.59 16 28 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 29 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.01 7.79 -2.38 -0.02 1.99 16 34 H 0.08 2.47 7.02 -2.39 -0.02 2.46 16 35 H 0.17 2.49 7.61 -2.91 -0.02 2.47 16 36 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 37 H 0.20 -0.06 6.91 -2.91 -0.02 -0.08 16 38 H 0.31 0.33 7.22 -2.91 -0.02 0.31 16 39 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 Total: -1.00 -83.31 347.54 2.89 -80.42 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.10 Total: 4.11 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 6.03 Total: -26.28 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -1.83 Total: -117.91 kcal Atomic # 8 Polarization: -80.79 SS G_CDS: -4.12 Total: -84.91 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 100.42 SS G_CDS: -0.32 Total: 100.10 kcal Total: -83.31 2.89 -80.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.947 kcal (2) G-P(sol) polarization free energy of solvation -83.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds