Wall clock time and date at job start Tue Mar 31 2020 20:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46935 * 89.99918 * 8 6 4 10 10 H 1.48499 * 109.47084 * 210.00014 * 8 6 4 11 11 H 1.48494 * 109.46925 * 329.99642 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 C 1.76194 * 107.22024 * 270.00162 * 14 12 2 18 18 C 1.38298 * 119.96794 * 89.99983 * 17 14 12 19 19 C 1.38260 * 120.12768 * 179.97438 * 18 17 14 20 20 C 1.38145 * 120.06588 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.93352 * 359.97438 * 20 19 18 22 22 N 1.40269 * 120.06462 * 180.02562 * 21 20 19 23 23 C 1.35068 * 127.38671 * 4.99690 * 22 21 20 24 24 N 1.30738 * 107.27324 * 179.97438 * 23 22 21 25 25 N 1.28417 * 110.64708 * 0.02562 * 24 23 22 26 26 N 1.28943 * 110.20512 * 359.74393 * 25 24 23 27 27 C 1.38111 * 119.96751 * 269.72705 * 17 14 12 28 28 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 30 30 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 31 31 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 33 33 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 34 34 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 35 35 H 1.07995 * 119.93598 * 359.97438 * 18 17 14 36 36 H 1.07999 * 119.96703 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.03042 * 180.02562 * 20 19 18 38 38 H 1.08000 * 126.35931 * 359.95005 * 23 22 21 39 39 H 1.08006 * 120.02750 * 0.02562 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 6 4.6444 -0.1183 1.7880 18 6 5.2373 0.7789 0.9185 19 6 6.5509 0.6001 0.5258 20 6 7.2748 -0.4763 1.0009 21 6 6.6824 -1.3784 1.8737 22 7 7.4151 -2.4720 2.3583 23 6 8.7227 -2.7396 2.1511 24 7 8.9958 -3.8521 2.7811 25 7 7.9500 -4.3064 3.3719 26 7 6.9471 -3.5220 3.1679 27 6 5.3650 -1.1931 2.2707 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7088 1.1614 -3.4843 32 1 0.7375 -2.1444 1.9993 33 1 2.4628 -2.5819 1.9863 34 1 1.5294 -2.5969 0.4707 35 1 4.6732 1.6209 0.5455 36 1 7.0114 1.3026 -0.1530 37 1 8.3010 -0.6152 0.6942 38 1 9.4140 -2.1451 1.5723 39 1 4.9026 -1.8912 2.9529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:13 Heat of formation + Delta-G solvation = 88.354185 kcal Electronic energy + Delta-G solvation = -27246.062949 eV Core-core repulsion = 23319.508494 eV Total energy + Delta-G solvation = -3926.554455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.45564 -39.71766 -36.92833 -36.30687 -35.50373 -35.35983 -32.73745 -32.65772 -31.57063 -30.41556 -29.20823 -25.67351 -25.39887 -25.29730 -24.43213 -22.58376 -22.12123 -20.88388 -19.63905 -18.06917 -17.07348 -16.87383 -16.74005 -16.70000 -16.51153 -15.98216 -15.69854 -15.18449 -14.57662 -14.26781 -13.81742 -13.62798 -13.52642 -13.32510 -12.85425 -12.83787 -12.47487 -12.13340 -12.04802 -11.90877 -11.88400 -11.68266 -11.51336 -11.33035 -11.29930 -11.09502 -10.95916 -10.82643 -10.77990 -10.54653 -10.32622 -10.19400 -9.72636 -9.37907 -8.99536 -8.60359 -8.11781 -6.21666 -4.30833 0.02648 0.52070 0.83809 1.33236 1.45853 1.98977 3.06581 3.15300 3.23686 3.24605 3.50281 3.71637 3.90026 4.11044 4.24601 4.36738 4.42627 4.54624 4.71793 4.85849 5.08508 5.08970 5.09356 5.20010 5.44789 5.50204 5.68163 5.85578 5.87109 5.95199 6.07573 6.22061 6.46414 6.55494 6.75845 6.78680 6.99002 7.29812 7.49257 7.65218 7.92137 8.11448 8.12378 8.72440 9.36331 10.83119 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004342 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.430174 B = 6446.515659 C = 7377.337912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.975 5.975 13 C 0.102 3.898 14 S 2.682 3.318 15 O -0.951 6.951 16 O -0.968 6.968 17 C -0.648 4.648 18 C 0.007 3.993 19 C -0.114 4.114 20 C -0.073 4.073 21 C 0.097 3.903 22 N -0.321 5.321 23 C 0.222 3.778 24 N -0.331 5.331 25 N -0.037 5.037 26 N -0.071 5.071 27 C -0.003 4.003 28 H 0.034 0.966 29 H 0.015 0.985 30 H 0.094 0.906 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.239 0.761 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 -0.494 4.582 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.816 5.816 13 C -0.044 4.044 14 S 2.770 3.230 15 O -0.941 6.941 16 O -0.958 6.958 17 C -0.731 4.731 18 C -0.013 4.013 19 C -0.133 4.133 20 C -0.094 4.094 21 C 0.004 3.996 22 N -0.111 5.111 23 C -0.075 4.075 24 N -0.181 5.181 25 N -0.032 5.032 26 N -0.056 5.056 27 C -0.024 4.024 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.255 0.745 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.112 -1.101 5.991 12.672 hybrid contribution 1.048 0.008 -2.083 2.332 sum 12.160 -1.093 3.909 12.820 Atomic orbital electron populations 1.22061 0.97483 0.99933 1.00983 1.18843 0.92198 0.92783 0.79904 0.92050 1.21368 1.32223 1.13271 0.90136 0.91913 1.24891 0.94854 0.94895 0.98904 1.69869 1.35931 1.22439 1.23973 0.86568 0.79228 0.79458 0.82561 1.20519 1.21071 1.20054 1.57447 1.62261 1.21857 1.40066 1.21299 0.99408 0.81417 1.02286 1.02380 0.73136 0.73985 0.73519 1.93578 1.83245 1.31040 1.86283 1.93546 1.85666 1.75606 1.40958 1.31591 1.27405 1.03283 1.10869 1.21267 0.94564 0.96060 0.89367 1.21201 0.94452 0.97497 1.00191 1.21083 1.00444 0.93377 0.94530 1.17545 0.92784 0.87919 1.01326 1.49066 1.08533 1.18536 1.34938 1.27409 0.85371 0.95801 0.98882 1.74472 1.21426 1.09444 1.12724 1.78085 0.93394 1.18344 1.13386 1.82754 1.19175 0.94207 1.09508 1.20650 0.91194 0.95216 0.95347 0.94688 0.96628 0.88720 0.92496 0.93175 0.92922 0.89854 0.82656 0.83343 0.84256 0.74509 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.97 37.16 0.33 -2.89 16 2 C 0.27 5.96 2.62 -69.08 -0.18 5.77 16 3 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 4 C -0.53 -12.67 7.99 -34.44 -0.28 -12.94 16 5 H 0.06 1.48 7.33 -52.49 -0.38 1.09 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -22.76 11.32 55.43 0.63 -22.13 16 8 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 N -0.98 -18.72 3.06 -115.85 -0.35 -19.07 16 13 C 0.10 1.71 9.28 59.85 0.56 2.26 16 14 S 2.68 48.39 5.64 -107.50 -0.61 47.78 16 15 O -0.95 -19.24 15.84 -57.17 -0.91 -20.15 16 16 O -0.97 -18.35 16.34 -57.17 -0.93 -19.28 16 17 C -0.65 -9.91 5.97 -39.61 -0.24 -10.14 16 18 C 0.01 0.10 9.52 -39.55 -0.38 -0.28 16 19 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 20 C -0.07 -0.67 9.49 -39.41 -0.37 -1.04 16 21 C 0.10 1.17 6.70 -83.57 -0.56 0.61 16 22 N -0.32 -3.89 3.85 -11.74 -0.05 -3.94 16 23 C 0.22 2.08 12.15 -90.15 -1.10 0.99 16 24 N -0.33 -4.19 12.15 29.64 0.36 -3.83 16 25 N -0.04 -0.55 13.39 60.35 0.81 0.26 16 26 N -0.07 -1.05 13.35 60.35 0.81 -0.25 16 27 C 0.00 -0.04 9.17 -39.41 -0.36 -0.40 16 28 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 35 H 0.16 2.10 7.61 -52.49 -0.40 1.70 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.65 6.91 -52.49 -0.36 0.29 16 38 H 0.24 0.80 7.22 -52.49 -0.38 0.42 16 39 H 0.15 2.24 7.33 -52.48 -0.38 1.86 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -31.55 347.53 -7.25 -38.79 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.15 Total: 0.29 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.06 Total: -18.04 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 2.20 Total: -48.97 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.84 Total: -39.43 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 48.39 SS G_CDS: -0.61 Total: 47.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.55 -7.25 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.148 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds