Wall clock time and date at job start Tue Mar 31 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42910 * 109.47163 * 2 1 4 4 C 1.35522 * 117.00033 * 180.02562 * 3 2 1 5 5 N 1.32410 * 119.52870 * 359.72813 * 4 3 2 6 6 C 1.31654 * 121.81016 * 179.74627 * 5 4 3 7 7 C 1.39544 * 120.64746 * 0.53002 * 6 5 4 8 8 C 1.47619 * 120.49145 * 179.76121 * 7 6 5 9 9 O 1.21586 * 120.00263 * 134.71306 * 8 7 6 10 10 N 1.34775 * 120.00110 * 314.71439 * 8 7 6 11 11 C 1.46499 * 120.00163 * 185.84434 * 10 8 7 12 12 C 1.50701 * 109.47474 * 89.99798 * 11 10 8 13 13 H 1.08006 * 119.99708 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00595 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00195 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47161 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46770 * 120.00140 * 16 14 12 19 19 H 1.48499 * 109.46997 * 239.99966 * 16 14 12 20 20 C 1.46497 * 120.00209 * 5.84312 * 10 8 7 21 21 C 1.53002 * 109.47467 * 98.04824 * 20 10 8 22 22 C 1.47193 * 109.47356 * 185.40441 * 21 20 10 23 23 N 6.20951 * 142.80391 * 142.89461 * 2 1 3 24 24 C 1.40250 * 119.01480 * 359.73863 * 7 6 5 25 25 C 1.38079 * 118.34290 * 0.02562 * 24 7 6 26 26 Cl 1.73606 * 120.37624 * 179.97438 * 25 24 7 27 27 H 1.08999 * 109.46588 * 299.99847 * 1 2 3 28 28 H 1.08995 * 109.46980 * 59.99474 * 1 2 3 29 29 H 1.08989 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47483 * 120.00362 * 2 1 3 31 31 H 1.09001 * 109.47044 * 240.00402 * 2 1 3 32 32 H 1.08003 * 119.67279 * 180.24343 * 6 5 4 33 33 H 1.09000 * 109.47384 * 209.99770 * 11 10 8 34 34 H 1.09003 * 109.47050 * 330.00096 * 11 10 8 35 35 H 0.96994 * 120.00239 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47324 * 218.05521 * 20 10 8 37 37 H 1.09007 * 109.47058 * 338.05233 * 20 10 8 38 38 H 1.08999 * 109.46994 * 305.40802 * 21 20 10 39 39 H 1.09002 * 109.46856 * 65.40238 * 21 20 10 40 40 H 1.08003 * 120.82723 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3499 1.5249 -0.0005 5 7 4.1479 0.4683 0.0044 6 6 5.4589 0.5886 -0.0008 7 6 6.0575 1.8492 -0.0008 8 6 7.5278 1.9801 -0.0014 9 8 8.0674 2.7721 -0.7497 10 7 8.2723 1.2218 0.8276 11 6 9.7179 1.4404 0.9203 12 6 10.0047 2.4538 1.9981 13 1 9.1914 2.8916 2.5579 14 6 11.3053 2.8221 2.2698 15 7 12.2957 2.2893 1.5879 16 14 11.6606 4.0788 3.6054 17 1 10.3836 4.5233 4.2192 18 1 12.5223 3.4639 4.6469 19 1 12.3586 5.2476 3.0122 20 6 7.6359 0.1789 1.6360 21 6 7.8038 -1.1758 0.9450 22 6 7.0552 -2.2021 1.6885 23 7 6.4763 -2.9939 2.2647 24 6 5.2414 2.9898 -0.0007 25 6 3.8716 2.8158 -0.0001 26 17 2.8119 4.1909 0.0007 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 6.0771 -0.2969 -0.0005 33 1 10.2126 0.5003 1.1645 34 1 10.0914 1.8101 -0.0347 35 1 13.2106 2.5481 1.7792 36 1 8.1040 0.1455 2.6198 37 1 6.5745 0.4015 1.7461 38 1 7.4214 -1.1138 -0.0739 39 1 8.8603 -1.4428 0.9208 40 1 5.6736 3.9796 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112277216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:40 Heat of formation + Delta-G solvation = -5.392111 kcal Electronic energy + Delta-G solvation = -26366.743877 eV Core-core repulsion = 22401.787821 eV Total energy + Delta-G solvation = -3964.956056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16035 -39.51757 -37.91841 -37.01570 -36.71528 -35.43958 -33.08673 -32.60249 -32.27576 -31.07522 -30.33197 -27.42506 -24.84802 -24.51487 -24.02698 -22.90049 -22.31445 -19.36579 -18.90001 -17.88816 -17.68781 -16.92200 -16.65766 -16.52895 -15.92206 -15.46398 -14.92418 -14.61020 -14.43906 -14.31908 -14.13425 -14.05555 -13.60059 -13.13396 -13.02178 -12.87278 -12.73061 -12.60529 -12.41858 -12.18014 -12.07969 -11.88852 -11.83830 -11.36010 -11.27438 -11.11781 -10.99819 -10.92488 -10.71395 -10.33067 -10.15815 -9.92662 -9.78241 -9.27990 -8.60073 -8.53672 -8.01112 -6.16366 -4.21576 0.57058 0.82521 1.85841 2.61032 2.63897 2.73793 2.99289 3.24174 3.31586 3.33389 3.40551 3.58089 3.92214 4.04673 4.35098 4.48909 4.54574 4.68005 4.72255 4.82319 4.90694 4.92883 5.03798 5.09855 5.18768 5.26714 5.33593 5.45726 5.53352 5.67193 5.72759 5.78176 5.94574 5.98546 6.78598 6.85212 7.21218 7.30412 7.38047 7.50272 7.79344 8.04102 8.07724 8.62779 8.84599 9.44611 10.91782 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003557 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.232629 B = 7868.898285 C = 9503.190265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.293 6.293 4 C 0.345 3.655 5 N -0.526 5.526 6 C 0.158 3.842 7 C -0.195 4.195 8 C 0.560 3.440 9 O -0.519 6.519 10 N -0.586 5.586 11 C 0.243 3.757 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.105 3.895 21 C -0.057 4.057 22 C 0.212 3.788 23 N -0.435 5.435 24 C 0.016 3.984 25 C -0.114 4.114 26 Cl -0.041 7.041 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.176 0.824 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 -4.715 -3.672 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.200 6.200 4 C 0.165 3.835 5 N -0.250 5.250 6 C 0.002 3.998 7 C -0.201 4.201 8 C 0.345 3.655 9 O -0.395 6.395 10 N -0.317 5.317 11 C 0.125 3.875 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.021 4.021 21 C -0.098 4.098 22 C -0.107 4.107 23 N -0.112 5.112 24 C -0.010 4.010 25 C -0.143 4.143 26 Cl -0.012 7.012 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.192 0.808 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.367 -5.982 -3.219 20.524 hybrid contribution 0.881 1.642 0.585 1.953 sum -18.486 -4.340 -2.634 19.171 Atomic orbital electron populations 1.21816 0.92779 1.02960 1.03446 1.22709 0.94946 0.80575 1.02920 1.86275 1.15883 1.31100 1.86712 1.19606 0.84881 0.88225 0.90760 1.67542 1.06301 1.30969 1.20154 1.23278 0.89204 0.97169 0.90183 1.21082 0.96441 0.93978 1.08601 1.17707 0.84706 0.81783 0.81259 1.90816 1.72674 1.36508 1.39533 1.48138 1.11170 1.32548 1.39831 1.19457 0.71635 0.97366 0.99018 1.21438 0.92510 1.24399 1.18823 0.92186 1.24904 0.96020 0.96372 0.96541 1.69919 0.99485 1.43164 1.40429 0.86458 0.78381 0.81267 0.81437 1.19741 1.20932 1.20825 1.21569 0.99301 0.84876 0.96356 1.20006 1.01363 0.90308 0.98094 1.29025 0.93579 0.94146 0.93913 1.81279 1.09938 1.10696 1.09254 1.21444 0.89424 1.00482 0.89659 1.20691 0.91841 0.87463 1.14340 1.98377 1.64904 1.40841 1.97085 0.91550 0.91555 0.90190 0.91232 0.91257 0.80760 0.94244 0.93047 0.92607 0.88227 0.90300 0.87275 0.85535 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.58 6.02 37.16 0.22 0.81 16 3 O -0.29 -3.46 9.57 -18.26 -0.17 -3.63 16 4 C 0.35 4.45 7.49 -16.94 -0.13 4.33 16 5 N -0.53 -6.67 9.18 -12.94 -0.12 -6.78 16 6 C 0.16 1.96 8.58 -17.14 -0.15 1.81 16 7 C -0.19 -2.82 5.11 -104.83 -0.54 -3.35 16 8 C 0.56 10.08 7.29 -12.43 -0.09 9.99 16 9 O -0.52 -11.55 16.55 5.29 0.09 -11.46 16 10 N -0.59 -10.20 2.46 -176.25 -0.43 -10.63 16 11 C 0.24 5.42 5.22 -5.19 -0.03 5.40 16 12 C -0.53 -13.58 9.39 -34.44 -0.32 -13.91 16 13 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 1.36 4.83 -4.04 -0.02 1.34 16 21 C -0.06 -0.56 5.10 -29.52 -0.15 -0.71 16 22 C 0.21 2.44 15.38 -20.71 -0.32 2.13 16 23 N -0.43 -6.15 18.55 42.21 0.78 -5.37 16 24 C 0.02 0.22 9.64 -38.88 -0.37 -0.15 16 25 C -0.11 -1.48 6.35 -39.27 -0.25 -1.73 16 26 Cl -0.04 -0.49 28.53 -51.86 -1.48 -1.97 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.18 1.81 3.63 -52.48 -0.19 1.62 16 33 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 34 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 37 H 0.08 0.94 5.03 -51.93 -0.26 0.68 16 38 H 0.11 0.88 6.21 -51.93 -0.32 0.56 16 39 H 0.13 1.18 8.07 -51.93 -0.42 0.76 16 40 H 0.16 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.34 366.31 -6.44 -37.78 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.49 Total: -2.13 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.85 Total: 6.90 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.97 Total: -46.56 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.09 Total: -15.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.34 -6.44 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112277216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.387 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds