Wall clock time and date at job start Tue Mar 31 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42910 * 109.47163 * 2 1 4 4 C 1.35522 * 117.00033 * 180.02562 * 3 2 1 5 5 N 1.32410 * 119.52870 * 359.72813 * 4 3 2 6 6 C 1.31654 * 121.81016 * 179.74627 * 5 4 3 7 7 C 1.39544 * 120.64746 * 0.53002 * 6 5 4 8 8 C 1.47619 * 120.49145 * 179.76121 * 7 6 5 9 9 O 1.21586 * 120.00263 * 134.71306 * 8 7 6 10 10 N 1.34775 * 120.00110 * 314.71439 * 8 7 6 11 11 C 1.46499 * 120.00163 * 185.84434 * 10 8 7 12 12 C 1.50701 * 109.47474 * 89.99798 * 11 10 8 13 13 H 1.08006 * 119.99708 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00595 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00195 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47161 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46770 * 120.00140 * 16 14 12 19 19 H 1.48499 * 109.46997 * 239.99966 * 16 14 12 20 20 C 1.46497 * 120.00209 * 5.84312 * 10 8 7 21 21 C 1.53002 * 109.47467 * 98.04824 * 20 10 8 22 22 C 1.47193 * 109.47356 * 185.40441 * 21 20 10 23 23 N 6.20951 * 142.80391 * 142.89461 * 2 1 3 24 24 C 1.40250 * 119.01480 * 359.73863 * 7 6 5 25 25 C 1.38079 * 118.34290 * 0.02562 * 24 7 6 26 26 Cl 1.73606 * 120.37624 * 179.97438 * 25 24 7 27 27 H 1.08999 * 109.46588 * 299.99847 * 1 2 3 28 28 H 1.08995 * 109.46980 * 59.99474 * 1 2 3 29 29 H 1.08989 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47483 * 120.00362 * 2 1 3 31 31 H 1.09001 * 109.47044 * 240.00402 * 2 1 3 32 32 H 1.08003 * 119.67279 * 180.24343 * 6 5 4 33 33 H 1.09000 * 109.47384 * 209.99770 * 11 10 8 34 34 H 1.09003 * 109.47050 * 330.00096 * 11 10 8 35 35 H 0.96994 * 120.00239 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47324 * 218.05521 * 20 10 8 37 37 H 1.09007 * 109.47058 * 338.05233 * 20 10 8 38 38 H 1.08999 * 109.46994 * 305.40802 * 21 20 10 39 39 H 1.09002 * 109.46856 * 65.40238 * 21 20 10 40 40 H 1.08003 * 120.82723 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3499 1.5249 -0.0005 5 7 4.1479 0.4683 0.0044 6 6 5.4589 0.5886 -0.0008 7 6 6.0575 1.8492 -0.0008 8 6 7.5278 1.9801 -0.0014 9 8 8.0674 2.7721 -0.7497 10 7 8.2723 1.2218 0.8276 11 6 9.7179 1.4404 0.9203 12 6 10.0047 2.4538 1.9981 13 1 9.1914 2.8916 2.5579 14 6 11.3053 2.8221 2.2698 15 7 12.2957 2.2893 1.5879 16 14 11.6606 4.0788 3.6054 17 1 10.3836 4.5233 4.2192 18 1 12.5223 3.4639 4.6469 19 1 12.3586 5.2476 3.0122 20 6 7.6359 0.1789 1.6360 21 6 7.8038 -1.1758 0.9450 22 6 7.0552 -2.2021 1.6885 23 7 6.4763 -2.9939 2.2647 24 6 5.2414 2.9898 -0.0007 25 6 3.8716 2.8158 -0.0001 26 17 2.8119 4.1909 0.0007 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 6.0771 -0.2969 -0.0005 33 1 10.2126 0.5003 1.1645 34 1 10.0914 1.8101 -0.0347 35 1 13.2106 2.5481 1.7792 36 1 8.1040 0.1455 2.6198 37 1 6.5745 0.4015 1.7461 38 1 7.4214 -1.1138 -0.0739 39 1 8.8603 -1.4428 0.9208 40 1 5.6736 3.9796 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112277216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:40 Heat of formation + Delta-G solvation = -25.058191 kcal Electronic energy + Delta-G solvation = -26367.596663 eV Core-core repulsion = 22401.787821 eV Total energy + Delta-G solvation = -3965.808842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.24190 -40.75031 -38.97667 -38.13473 -37.70614 -36.78253 -34.90285 -33.68840 -33.12528 -32.33503 -31.34768 -29.11560 -26.01435 -25.56907 -25.34776 -24.19334 -23.29062 -20.71980 -19.84782 -19.01013 -18.77289 -18.42046 -18.04046 -17.53173 -17.15714 -16.76778 -16.33774 -15.96957 -15.60223 -15.35963 -15.16618 -15.10463 -14.77097 -14.40038 -14.20741 -14.09392 -13.66036 -13.53044 -13.48354 -13.39375 -13.25178 -13.06051 -12.97917 -12.69747 -12.58219 -12.50491 -12.23397 -12.16088 -12.00488 -11.74839 -11.63716 -11.36251 -10.98856 -10.65376 -10.56187 -9.65876 -9.53953 -8.16465 -6.27735 -0.49114 -0.24083 0.84606 1.41916 1.45206 1.54411 1.58950 1.71424 1.74895 1.80813 2.11417 2.42235 2.45297 2.93277 3.01210 3.16540 3.40024 3.49562 3.68233 3.89006 3.93414 4.00450 4.08525 4.15736 4.28598 4.37630 4.45575 4.68058 4.74709 4.77439 4.94116 4.95549 5.01865 5.13509 5.22429 5.37094 5.57060 5.85067 5.93809 6.13555 6.35309 6.55437 6.59544 6.81005 7.21674 7.43818 8.90615 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003557 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.232629 B = 7868.898285 C = 9503.190265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.298 6.298 4 C 0.348 3.652 5 N -0.525 5.525 6 C 0.175 3.825 7 C -0.206 4.206 8 C 0.562 3.438 9 O -0.571 6.571 10 N -0.584 5.584 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.054 0.946 14 C 0.016 3.984 15 N -0.922 5.922 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.286 1.286 20 C 0.103 3.897 21 C -0.047 4.047 22 C 0.239 3.761 23 N -0.475 5.475 24 C 0.014 3.986 25 C -0.118 4.118 26 Cl -0.032 7.032 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.000 -5.618 -3.153 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.204 6.204 4 C 0.168 3.832 5 N -0.249 5.249 6 C 0.018 3.982 7 C -0.212 4.212 8 C 0.350 3.650 9 O -0.451 6.451 10 N -0.313 5.313 11 C 0.137 3.863 12 C -0.581 4.581 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.212 1.212 20 C -0.022 4.022 21 C -0.088 4.088 22 C -0.078 4.078 23 N -0.153 5.153 24 C -0.012 4.012 25 C -0.148 4.148 26 Cl -0.003 7.003 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.212 0.788 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.113 -6.917 -2.674 22.377 hybrid contribution 1.303 1.919 0.402 2.354 sum -19.810 -4.999 -2.271 20.556 Atomic orbital electron populations 1.21837 0.90836 1.04340 1.03468 1.22979 0.96477 0.79301 1.03028 1.86296 1.15096 1.32850 1.86136 1.19759 0.85497 0.88185 0.89719 1.67647 1.06098 1.30741 1.20408 1.23492 0.89302 0.96853 0.88576 1.20705 0.94037 0.95242 1.11239 1.18123 0.86048 0.80651 0.80213 1.90786 1.73972 1.38661 1.41656 1.47965 1.09574 1.33586 1.40204 1.18972 0.74504 0.96717 0.96062 1.21765 0.92370 1.24791 1.19148 0.92760 1.25636 0.96112 0.98091 0.98517 1.70008 0.99782 1.44533 1.41866 0.85567 0.78235 0.78990 0.79224 1.19337 1.20016 1.21174 1.21742 0.99606 0.84984 0.95872 1.19971 1.02201 0.87971 0.98640 1.29030 0.92489 0.93471 0.92838 1.81322 1.11419 1.12036 1.10515 1.21446 0.89887 1.00326 0.89538 1.20663 0.91583 0.88057 1.14517 1.98379 1.64481 1.40409 1.97049 0.91625 0.91419 0.88122 0.91303 0.90919 0.78756 0.93461 0.96836 0.92530 0.88496 0.88898 0.84743 0.84278 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.06 0.91 6.02 71.98 0.43 1.34 16 3 O -0.30 -6.43 9.57 -88.25 -0.84 -7.28 16 4 C 0.35 8.36 7.49 84.84 0.64 8.99 16 5 N -0.52 -12.11 9.18 -307.73 -2.82 -14.94 16 6 C 0.17 3.96 8.58 85.03 0.73 4.69 16 7 C -0.21 -5.78 5.11 -20.00 -0.10 -5.88 16 8 C 0.56 20.29 7.29 86.72 0.63 20.93 16 9 O -0.57 -26.21 16.55 -3.99 -0.07 -26.27 16 10 N -0.58 -20.09 2.46 -829.81 -2.04 -22.13 16 11 C 0.26 11.63 5.22 85.63 0.45 12.07 16 12 C -0.54 -27.85 9.39 25.60 0.24 -27.60 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.02 0.85 5.46 84.65 0.46 1.31 16 15 N -0.92 -51.24 13.29 21.45 0.28 -50.96 16 16 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 C 0.10 2.47 4.83 86.38 0.42 2.88 16 21 C -0.05 -0.82 5.10 28.79 0.15 -0.67 16 22 C 0.24 4.95 15.38 89.42 1.38 6.32 16 23 N -0.48 -12.57 18.55 20.02 0.37 -12.19 16 24 C 0.01 0.38 9.64 22.72 0.22 0.60 16 25 C -0.12 -2.94 6.35 22.47 0.14 -2.80 16 26 Cl -0.03 -0.73 28.53 -2.72 -0.08 -0.80 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.20 3.46 3.63 -2.91 -0.01 3.45 16 33 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 34 H 0.01 0.72 7.35 -2.39 -0.02 0.70 16 35 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.10 2.44 8.13 -2.39 -0.02 2.42 16 37 H 0.09 2.01 5.03 -2.38 -0.01 2.00 16 38 H 0.14 1.72 6.21 -2.39 -0.01 1.71 16 39 H 0.14 2.22 8.07 -2.39 -0.02 2.20 16 40 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -68.25 366.31 4.44 -63.81 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.09 Total: 5.23 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.52 Total: 21.31 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -4.21 Total: -100.22 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.91 Total: -33.55 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.80 kcal Total: -68.25 4.44 -63.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112277216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.748 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds