Wall clock time and date at job start Tue Mar 31 2020 20:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46825 * 2 1 4 4 O 1.42902 * 109.47212 * 120.00098 * 2 1 3 5 5 C 1.35948 * 116.99803 * 275.12615 * 4 2 1 6 6 C 1.38718 * 120.02187 * 5.46201 * 5 4 2 7 7 C 1.38169 * 120.01665 * 180.02562 * 6 5 4 8 8 C 1.38411 * 120.04907 * 359.76271 * 7 6 5 9 9 F 1.35100 * 119.97857 * 180.28426 * 8 7 6 10 10 C 1.38650 * 120.04205 * 0.51228 * 8 7 6 11 11 F 1.35091 * 120.00641 * 179.74165 * 10 8 7 12 12 C 1.38361 * 119.98155 * 359.46829 * 10 8 7 13 13 C 1.50701 * 109.47211 * 240.00325 * 2 1 3 14 14 O 1.21302 * 119.99824 * 244.99639 * 13 2 1 15 15 N 1.34776 * 120.00020 * 64.99583 * 13 2 1 16 16 C 1.40596 * 119.99762 * 180.02562 * 15 13 2 17 17 C 1.40649 * 126.08488 * 0.02562 * 16 15 13 18 18 N 1.30902 * 108.38876 * 180.02562 * 17 16 15 19 19 N 1.40068 * 108.40738 * 0.02562 * 18 17 16 20 20 C 1.37328 * 126.07131 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00134 * 179.97438 * 20 19 18 22 22 C 1.38989 * 119.99540 * 359.97438 * 20 19 18 23 23 N 1.31297 * 120.00388 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99616 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47139 * 59.99750 * 24 22 20 26 26 H 1.48500 * 109.46974 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47023 * 299.99959 * 24 22 20 28 28 C 1.35675 * 126.08244 * 179.71899 * 16 15 13 29 29 H 1.08999 * 109.46990 * 299.99569 * 1 2 3 30 30 H 1.09000 * 109.47167 * 60.00086 * 1 2 3 31 31 H 1.09005 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.08010 * 119.99316 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.97280 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.02211 * 180.29369 * 12 10 8 35 35 H 0.96994 * 120.00116 * 359.97438 * 15 13 2 36 36 H 1.08005 * 125.80181 * 0.02720 * 17 16 15 37 37 H 0.96991 * 119.99992 * 180.02562 * 23 22 20 38 38 H 1.08008 * 126.24508 * 359.97324 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1100 0.0622 2.3052 6 6 1.6547 1.3723 2.3286 7 6 1.7607 2.1203 3.4855 8 6 2.3165 1.5618 4.6234 9 9 2.4141 2.2926 5.7555 10 6 2.7774 0.2544 4.6009 11 9 3.3246 -0.2883 5.7105 12 6 2.6718 -0.4962 3.4433 13 6 2.0323 -0.7103 -1.2305 14 8 2.6531 -1.7467 -1.1215 15 7 1.7918 -0.1941 -2.4520 16 6 2.2601 -0.8571 -3.6000 17 6 2.9882 -2.0602 -3.6227 18 7 3.2457 -2.3636 -4.8698 19 7 2.6950 -1.3703 -5.6894 20 6 2.7529 -1.3297 -7.0609 21 1 2.2916 -0.5135 -7.5969 22 6 3.4050 -2.3392 -7.7590 23 7 3.9654 -3.3318 -7.1073 24 14 3.4831 -2.2844 -9.6246 25 1 4.1775 -1.0443 -10.0547 26 1 4.2281 -3.4681 -10.1237 27 1 2.1052 -2.2977 -10.1783 28 6 2.0848 -0.4533 -4.8833 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2173 1.8079 1.4423 33 1 1.4056 3.1401 3.5031 34 1 3.0263 -1.5162 3.4264 35 1 1.2951 0.6344 -2.5392 36 1 3.2845 -2.6358 -2.7582 37 1 4.4208 -4.0360 -7.5945 38 1 1.5611 0.4339 -5.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139321176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:43 Heat of formation + Delta-G solvation = -42.281266 kcal Electronic energy + Delta-G solvation = -27371.577958 eV Core-core repulsion = 22853.225588 eV Total energy + Delta-G solvation = -4518.352371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.74544 -48.81092 -40.90619 -39.87385 -38.71383 -37.27384 -34.36882 -33.37543 -32.37688 -31.03302 -30.25533 -29.69088 -27.81276 -25.37293 -24.53115 -23.81243 -22.76392 -21.13035 -20.40907 -19.51645 -19.02931 -17.96020 -17.78560 -17.49705 -16.92345 -16.65565 -16.32641 -15.72454 -15.50338 -15.23145 -15.21134 -14.86165 -14.79495 -14.45592 -14.35327 -13.99826 -13.62926 -13.28453 -13.20889 -13.09582 -12.96385 -12.52953 -12.40301 -12.00006 -11.72171 -11.53565 -11.38145 -11.29572 -11.17046 -10.99990 -10.59429 -10.26630 -9.47876 -9.28558 -9.22626 -8.86860 -8.56151 -8.12331 -6.79589 -6.60165 -4.28431 0.50857 0.64981 2.36013 2.64743 2.95775 2.98268 3.01927 3.06245 3.42354 3.59537 3.62934 3.82577 4.01257 4.18772 4.26900 4.32710 4.48448 4.56666 4.65120 4.71241 4.78595 4.97657 4.98061 5.25255 5.30333 5.36220 5.45803 5.51492 5.70302 5.79796 6.16291 6.20402 6.36139 6.77460 6.87659 6.88249 7.03895 7.17118 7.79901 8.03725 8.19489 8.53142 8.71936 9.31638 9.60676 10.35626 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.001909 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.287085 B =14663.614762 C =15052.556097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.099 0.901 4 O -0.272 6.272 5 C 0.160 3.840 6 C -0.197 4.197 7 C -0.081 4.081 8 C 0.023 3.977 9 F -0.132 7.132 10 C 0.112 3.888 11 F -0.123 7.123 12 C -0.161 4.161 13 C 0.501 3.499 14 O -0.511 6.511 15 N -0.616 5.616 16 C -0.063 4.063 17 C -0.031 4.031 18 N -0.260 5.260 19 N -0.141 5.141 20 C -0.323 4.323 21 H 0.116 0.884 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.935 3.065 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.267 1.267 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.276 0.724 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 12.009 16.363 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.009 3.991 3 H 0.117 0.883 4 O -0.184 6.184 5 C 0.113 3.887 6 C -0.215 4.215 7 C -0.100 4.100 8 C 0.002 3.998 9 F -0.110 7.110 10 C 0.091 3.909 11 F -0.101 7.101 12 C -0.181 4.181 13 C 0.285 3.715 14 O -0.385 6.385 15 N -0.260 5.260 16 C -0.168 4.168 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.092 4.908 20 C -0.456 4.456 21 H 0.134 0.866 22 C -0.172 4.172 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.234 4.234 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.230 0.770 36 H 0.193 0.807 37 H 0.087 0.913 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.142 9.974 15.664 19.559 hybrid contribution -0.618 1.382 0.073 1.516 sum -6.759 11.356 15.737 20.550 Atomic orbital electron populations 1.22371 0.92403 1.04947 1.03789 1.22294 0.95811 0.96949 0.84006 0.88333 1.86282 1.80199 1.36511 1.15372 1.18687 0.93293 0.89891 0.86805 1.21289 1.06408 0.93894 0.99950 1.20837 0.97759 1.00985 0.90410 1.17519 1.07931 0.89473 0.84842 1.91519 1.94661 1.76446 1.48421 1.17228 0.98904 0.90736 0.84011 1.91551 1.82951 1.85693 1.49918 1.20220 1.05426 1.02652 0.89759 1.19643 0.82167 0.86328 0.83407 1.90660 1.39469 1.22888 1.85511 1.42273 1.54520 1.25545 1.03673 1.17199 1.15064 1.00167 0.84356 1.24125 1.03427 0.96651 0.96492 1.78281 1.21398 1.10762 0.98655 1.44564 1.28793 1.12215 1.05210 1.19836 1.37801 1.10934 0.76991 0.86594 1.25656 0.95289 0.94823 1.01388 1.70201 1.25037 1.07638 1.36597 0.85886 0.79148 0.78624 0.80444 1.19133 1.20107 1.19136 1.21231 1.12235 1.00638 0.89260 0.90760 0.89843 0.90233 0.83363 0.83262 0.82496 0.76966 0.80732 0.91317 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.12 37.16 0.34 -1.07 16 2 C 0.07 0.75 2.64 -27.88 -0.07 0.67 16 3 H 0.10 0.75 6.32 -51.93 -0.33 0.43 16 4 O -0.27 -3.44 9.34 -39.43 -0.37 -3.80 16 5 C 0.16 1.64 6.60 -39.25 -0.26 1.38 16 6 C -0.20 -1.49 8.24 -39.43 -0.32 -1.81 16 7 C -0.08 -0.59 10.02 -39.54 -0.40 -0.99 16 8 C 0.02 0.22 7.30 -39.37 -0.29 -0.07 16 9 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 10 C 0.11 1.15 7.30 -39.38 -0.29 0.87 16 11 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16 12 C -0.16 -1.65 9.96 -39.38 -0.39 -2.05 16 13 C 0.50 8.10 7.15 -10.99 -0.08 8.02 16 14 O -0.51 -10.80 13.66 -14.32 -0.20 -10.99 16 15 N -0.62 -9.84 5.43 -10.00 -0.05 -9.90 16 16 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 17 C -0.03 -0.81 10.85 -17.04 -0.18 -1.00 16 18 N -0.26 -7.43 10.40 30.80 0.32 -7.11 16 19 N -0.14 -3.75 3.74 -11.41 -0.04 -3.80 16 20 C -0.32 -8.33 10.25 -14.81 -0.15 -8.49 16 21 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 22 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -21.17 11.81 55.50 0.66 -20.52 16 24 Si 0.94 18.50 29.55 -169.99 -5.02 13.48 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 28 C -0.08 -1.85 11.49 -16.40 -0.19 -2.04 16 29 H 0.07 0.44 6.90 -51.93 -0.36 0.08 16 30 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.15 0.75 5.42 -52.48 -0.28 0.47 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.40 4.47 8.61 -40.82 -0.35 4.12 16 36 H 0.18 4.50 5.92 -52.48 -0.31 4.19 16 37 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.15 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -34.14 342.46 -5.71 -39.86 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.28 Total: 7.75 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.96 Total: -7.45 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.88 Total: -41.32 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.56 Total: -14.80 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.14 -5.71 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139321176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.425 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds