Wall clock time and date at job start Tue Mar 31 2020 20:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46825 * 2 1 4 4 O 1.42902 * 109.47212 * 120.00098 * 2 1 3 5 5 C 1.35948 * 116.99803 * 275.12615 * 4 2 1 6 6 C 1.38718 * 120.02187 * 5.46201 * 5 4 2 7 7 C 1.38169 * 120.01665 * 180.02562 * 6 5 4 8 8 C 1.38411 * 120.04907 * 359.76271 * 7 6 5 9 9 F 1.35100 * 119.97857 * 180.28426 * 8 7 6 10 10 C 1.38650 * 120.04205 * 0.51228 * 8 7 6 11 11 F 1.35091 * 120.00641 * 179.74165 * 10 8 7 12 12 C 1.38361 * 119.98155 * 359.46829 * 10 8 7 13 13 C 1.50701 * 109.47211 * 240.00325 * 2 1 3 14 14 O 1.21302 * 119.99824 * 244.99639 * 13 2 1 15 15 N 1.34776 * 120.00020 * 64.99583 * 13 2 1 16 16 C 1.40596 * 119.99762 * 180.02562 * 15 13 2 17 17 C 1.40649 * 126.08488 * 0.02562 * 16 15 13 18 18 N 1.30902 * 108.38876 * 180.02562 * 17 16 15 19 19 N 1.40068 * 108.40738 * 0.02562 * 18 17 16 20 20 C 1.37328 * 126.07131 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00134 * 179.97438 * 20 19 18 22 22 C 1.38989 * 119.99540 * 359.97438 * 20 19 18 23 23 N 1.31297 * 120.00388 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99616 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47139 * 59.99750 * 24 22 20 26 26 H 1.48500 * 109.46974 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47023 * 299.99959 * 24 22 20 28 28 C 1.35675 * 126.08244 * 179.71899 * 16 15 13 29 29 H 1.08999 * 109.46990 * 299.99569 * 1 2 3 30 30 H 1.09000 * 109.47167 * 60.00086 * 1 2 3 31 31 H 1.09005 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.08010 * 119.99316 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.97280 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.02211 * 180.29369 * 12 10 8 35 35 H 0.96994 * 120.00116 * 359.97438 * 15 13 2 36 36 H 1.08005 * 125.80181 * 0.02720 * 17 16 15 37 37 H 0.96991 * 119.99992 * 180.02562 * 23 22 20 38 38 H 1.08008 * 126.24508 * 359.97324 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1100 0.0622 2.3052 6 6 1.6547 1.3723 2.3286 7 6 1.7607 2.1203 3.4855 8 6 2.3165 1.5618 4.6234 9 9 2.4141 2.2926 5.7555 10 6 2.7774 0.2544 4.6009 11 9 3.3246 -0.2883 5.7105 12 6 2.6718 -0.4962 3.4433 13 6 2.0323 -0.7103 -1.2305 14 8 2.6531 -1.7467 -1.1215 15 7 1.7918 -0.1941 -2.4520 16 6 2.2601 -0.8571 -3.6000 17 6 2.9882 -2.0602 -3.6227 18 7 3.2457 -2.3636 -4.8698 19 7 2.6950 -1.3703 -5.6894 20 6 2.7529 -1.3297 -7.0609 21 1 2.2916 -0.5135 -7.5969 22 6 3.4050 -2.3392 -7.7590 23 7 3.9654 -3.3318 -7.1073 24 14 3.4831 -2.2844 -9.6246 25 1 4.1775 -1.0443 -10.0547 26 1 4.2281 -3.4681 -10.1237 27 1 2.1052 -2.2977 -10.1783 28 6 2.0848 -0.4533 -4.8833 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2173 1.8079 1.4423 33 1 1.4056 3.1401 3.5031 34 1 3.0263 -1.5162 3.4264 35 1 1.2951 0.6344 -2.5392 36 1 3.2845 -2.6358 -2.7582 37 1 4.4208 -4.0360 -7.5945 38 1 1.5611 0.4339 -5.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139321176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:42 Heat of formation + Delta-G solvation = -64.768179 kcal Electronic energy + Delta-G solvation = -27372.553064 eV Core-core repulsion = 22853.225588 eV Total energy + Delta-G solvation = -4519.327476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.53654 -49.59888 -41.95644 -41.39007 -40.06978 -38.16251 -35.96277 -35.06735 -33.29362 -32.21316 -31.71806 -30.42325 -29.50870 -26.96211 -25.63768 -24.53175 -23.68770 -22.84491 -21.77587 -21.17361 -19.84140 -19.31371 -18.85338 -18.46321 -17.92378 -17.45296 -17.41991 -17.21893 -16.82975 -16.49572 -16.08558 -16.03074 -15.74182 -15.55114 -15.44255 -15.04459 -15.02373 -14.81076 -14.63842 -13.94725 -13.78627 -13.48610 -13.38893 -13.27113 -13.06455 -12.86732 -12.85146 -12.70038 -12.14271 -12.13717 -11.94011 -11.82825 -11.00358 -10.81816 -10.63528 -10.17222 -10.09706 -9.31592 -8.53732 -8.45613 -6.23465 -0.18787 -0.04410 1.20534 1.38696 1.45553 1.49339 1.57667 1.86450 2.13230 2.27772 2.43925 2.50147 2.83419 2.92136 3.10746 3.30736 3.49317 3.60359 3.73899 3.84190 3.92138 4.00036 4.14444 4.45769 4.60288 4.67787 4.71604 4.75293 4.80227 4.89323 5.01238 5.03078 5.07402 5.21713 5.30439 5.43113 5.50264 5.96815 6.13620 6.32425 6.71080 6.74948 7.34781 7.48341 7.69220 8.53478 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.001909 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.287085 B =14663.614762 C =15052.556097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 H 0.143 0.857 4 O -0.305 6.305 5 C 0.147 3.853 6 C -0.180 4.180 7 C -0.065 4.065 8 C 0.013 3.987 9 F -0.139 7.139 10 C 0.094 3.906 11 F -0.136 7.136 12 C -0.175 4.175 13 C 0.496 3.504 14 O -0.568 6.568 15 N -0.603 5.603 16 C -0.044 4.044 17 C -0.062 4.062 18 N -0.313 5.313 19 N -0.169 5.169 20 C -0.353 4.353 21 H 0.144 0.856 22 C -0.008 4.008 23 N -0.826 5.826 24 Si 1.019 2.981 25 H -0.252 1.252 26 H -0.281 1.281 27 H -0.252 1.252 28 C -0.074 4.074 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.148 0.852 35 H 0.425 0.575 36 H 0.163 0.837 37 H 0.275 0.725 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 16.122 15.734 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 H 0.160 0.840 4 O -0.218 6.218 5 C 0.100 3.900 6 C -0.198 4.198 7 C -0.083 4.083 8 C -0.007 4.007 9 F -0.118 7.118 10 C 0.074 3.926 11 F -0.114 7.114 12 C -0.194 4.194 13 C 0.283 3.717 14 O -0.446 6.446 15 N -0.250 5.250 16 C -0.150 4.150 17 C -0.238 4.238 18 N -0.145 5.145 19 N 0.062 4.938 20 C -0.484 4.484 21 H 0.161 0.839 22 C -0.220 4.220 23 N -0.454 5.454 24 Si 0.838 3.162 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.176 1.176 28 C -0.225 4.225 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.202 0.798 33 H 0.204 0.796 34 H 0.166 0.834 35 H 0.263 0.737 36 H 0.180 0.820 37 H 0.085 0.915 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.502 14.155 15.071 22.356 hybrid contribution 0.061 0.166 0.469 0.501 sum -8.441 14.322 15.540 22.756 Atomic orbital electron populations 1.22432 0.89698 1.04395 1.06562 1.22373 0.97465 0.97391 0.80806 0.84020 1.86239 1.80996 1.38137 1.16400 1.18813 0.94269 0.91049 0.85826 1.21627 1.04738 0.92242 1.01176 1.21222 0.95868 1.02295 0.88942 1.17805 1.08330 0.89069 0.85492 1.91501 1.94769 1.76459 1.49063 1.17393 0.99955 0.91494 0.83754 1.91511 1.83348 1.86025 1.50526 1.20231 1.06211 1.02612 0.90392 1.20805 0.80444 0.85629 0.84849 1.90650 1.41782 1.25665 1.86487 1.42159 1.54536 1.26225 1.02093 1.17252 1.12788 0.98613 0.86369 1.24150 1.05257 0.98734 0.95618 1.78173 1.23327 1.12981 0.99985 1.44856 1.30121 1.12912 1.05876 1.20594 1.38476 1.12127 0.77174 0.83882 1.26896 0.94177 0.93911 1.07004 1.70399 1.27086 1.09027 1.38933 0.84657 0.79685 0.78715 0.73189 1.17630 1.20629 1.17628 1.22045 1.10690 1.00893 0.88827 0.87733 0.87249 0.92560 0.79780 0.79617 0.83437 0.73660 0.82049 0.91489 0.78892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.12 71.98 0.66 -1.35 16 2 C 0.08 1.43 2.64 29.85 0.08 1.51 16 3 H 0.14 1.36 6.32 -2.38 -0.02 1.34 16 4 O -0.30 -7.30 9.34 -73.97 -0.69 -7.99 16 5 C 0.15 2.71 6.60 22.49 0.15 2.86 16 6 C -0.18 -1.89 8.24 22.37 0.18 -1.71 16 7 C -0.06 -0.67 10.02 22.29 0.22 -0.44 16 8 C 0.01 0.23 7.30 22.41 0.16 0.39 16 9 F -0.14 -2.70 17.18 44.97 0.77 -1.93 16 10 C 0.09 1.94 7.30 22.40 0.16 2.10 16 11 F -0.14 -3.17 17.18 44.97 0.77 -2.40 16 12 C -0.17 -3.62 9.96 22.40 0.22 -3.39 16 13 C 0.50 15.39 7.15 87.66 0.63 16.02 16 14 O -0.57 -24.76 13.66 15.89 0.22 -24.54 16 15 N -0.60 -17.77 5.43 -303.93 -1.65 -19.42 16 16 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16 17 C -0.06 -3.35 10.85 85.42 0.93 -2.42 16 18 N -0.31 -18.68 10.40 -56.47 -0.59 -19.26 16 19 N -0.17 -9.10 3.74 -190.01 -0.71 -9.81 16 20 C -0.35 -18.14 10.25 84.01 0.86 -17.28 16 21 H 0.14 6.25 7.83 -2.91 -0.02 6.23 16 22 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 23 N -0.83 -47.55 11.81 21.66 0.26 -47.29 16 24 Si 1.02 37.83 29.55 68.60 2.03 39.85 16 25 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 26 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 27 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 28 C -0.07 -3.20 11.49 83.37 0.96 -2.24 16 29 H 0.10 0.63 6.90 -2.39 -0.02 0.62 16 30 H 0.11 0.72 7.92 -2.39 -0.02 0.70 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 32 H 0.19 0.57 5.42 -2.91 -0.02 0.55 16 33 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.42 7.60 8.61 -92.71 -0.80 6.81 16 36 H 0.16 8.95 5.92 -2.91 -0.02 8.93 16 37 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.19 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -82.93 342.46 6.71 -76.22 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.36 Total: 24.14 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.94 Total: -7.57 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -2.69 Total: -95.79 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.47 Total: -32.53 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.55 Total: -4.33 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Total: -82.93 6.71 -76.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139321176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.452 kcal (2) G-P(sol) polarization free energy of solvation -82.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds