Wall clock time and date at job start Tue Mar 31 2020 20:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99992 * 2 1 4 4 C 1.50700 * 109.47207 * 269.99907 * 3 2 1 5 5 H 1.07998 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31524 * 119.99925 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00263 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46551 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46981 * 120.00073 * 8 6 4 11 11 H 1.48501 * 109.47071 * 239.99952 * 8 6 4 12 12 C 1.34771 * 120.00024 * 179.97438 * 2 1 3 13 13 O 1.21567 * 120.00030 * 185.30684 * 12 2 1 14 14 C 1.47777 * 120.00229 * 5.31132 * 12 2 1 15 15 C 1.39553 * 120.11951 * 311.70141 * 14 12 2 16 16 C 1.38538 * 119.79099 * 180.24734 * 15 14 12 17 17 N 1.40033 * 119.97942 * 179.75003 * 16 15 14 18 18 C 1.47045 * 125.40843 * 353.65902 * 17 16 15 19 19 C 1.54112 * 103.86065 * 179.86992 * 18 17 16 20 20 N 1.47050 * 103.85899 * 0.37310 * 19 18 17 21 21 C 1.33945 * 125.40544 * 173.96270 * 17 16 15 22 22 O 1.21587 * 123.04884 * 359.97438 * 21 17 16 23 23 C 1.39011 * 120.03927 * 359.47964 * 16 15 14 24 24 C 1.38160 * 120.24528 * 0.27123 * 23 16 15 25 25 C 1.38177 * 120.21150 * 359.97438 * 24 23 16 26 26 Cl 1.73608 * 120.02064 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47215 * 275.26228 * 1 2 3 28 28 H 1.08999 * 109.46940 * 35.26245 * 1 2 3 29 29 H 1.08999 * 109.46984 * 155.25875 * 1 2 3 30 30 H 1.09006 * 109.47053 * 30.00191 * 3 2 1 31 31 H 1.09003 * 109.47470 * 149.99601 * 3 2 1 32 32 H 0.97001 * 119.99492 * 180.02562 * 7 6 4 33 33 H 1.07995 * 120.10508 * 0.02562 * 15 14 12 34 34 H 1.09000 * 110.55277 * 298.58929 * 18 17 16 35 35 H 1.08998 * 110.55022 * 61.40536 * 18 17 16 36 36 H 1.08996 * 110.75498 * 241.68015 * 19 18 17 37 37 H 1.08998 * 110.46464 * 118.92382 * 19 18 17 38 38 H 0.97007 * 125.41012 * 179.75539 * 20 19 18 39 39 H 1.07999 * 119.87526 * 180.29520 * 23 16 15 40 40 H 1.08010 * 119.89168 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4368 3.4176 -3.4339 9 1 2.8599 2.4170 -4.3672 10 1 2.7987 4.7382 -3.6668 11 1 4.8993 3.5264 -3.6675 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1694 0.0979 14 6 1.4048 -2.4443 -0.1174 15 6 0.2907 -2.6885 0.6868 16 6 -0.3893 -3.8902 0.5743 17 7 -1.5046 -4.1415 1.3829 18 6 -1.9766 -3.2780 2.4756 19 6 -3.2177 -4.0136 3.0175 20 7 -3.3077 -5.2179 2.1786 21 6 -2.3074 -5.2094 1.2877 22 8 -2.1435 -6.0911 0.4666 23 6 0.0314 -4.8444 -0.3449 24 6 1.1310 -4.6022 -1.1455 25 6 1.8199 -3.4092 -1.0383 26 17 3.2014 -3.1103 -2.0463 27 1 -0.3633 0.0942 1.0233 28 1 -0.3633 0.8391 -0.5933 29 1 -0.3633 -0.9333 -0.4301 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5139 32 1 4.0295 4.4444 -0.8504 33 1 -0.0381 -1.9445 1.3972 34 1 -1.2142 -3.1889 3.2494 35 1 -2.2530 -2.2950 2.0943 36 1 -4.1111 -3.3998 2.9029 37 1 -3.0732 -4.2856 4.0631 38 1 -3.9840 -5.9088 2.2577 39 1 -0.5036 -5.7784 -0.4338 40 1 1.4527 -5.3474 -1.8581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173232502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:44 Heat of formation + Delta-G solvation = -6.111433 kcal Electronic energy + Delta-G solvation = -26758.826044 eV Core-core repulsion = 22793.838795 eV Total energy + Delta-G solvation = -3964.987249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85845 -39.82891 -38.01569 -36.93047 -36.23900 -34.85646 -34.38907 -32.71476 -31.28923 -30.03796 -29.01385 -27.75421 -26.04976 -24.42947 -23.94682 -22.96875 -22.13554 -20.89265 -19.07061 -18.13421 -17.18106 -17.13245 -16.84670 -16.51211 -15.87806 -15.79337 -15.12382 -14.96038 -14.59176 -14.36050 -14.29370 -14.06324 -13.85941 -13.63364 -12.98837 -12.95067 -12.81827 -12.47816 -12.34098 -12.16285 -11.94480 -11.62680 -11.42898 -11.21300 -10.87208 -10.64385 -10.61220 -10.28592 -10.15405 -10.11008 -9.65055 -9.61816 -9.14340 -8.89741 -8.43199 -7.97669 -7.67620 -6.04388 -4.08706 0.95658 1.07055 1.95532 2.43217 2.65537 3.26808 3.30833 3.31783 3.38914 3.43635 3.64405 3.80549 3.95915 4.37227 4.38233 4.45617 4.70882 4.82632 4.88636 5.01727 5.13946 5.14650 5.27689 5.30546 5.37650 5.60891 5.76392 5.81264 5.84404 6.11281 6.17980 6.19552 6.22444 6.59540 6.76816 6.98526 7.02813 7.42041 7.50270 7.92443 8.06346 8.22478 8.32675 8.87119 9.02762 9.56501 11.03762 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003374 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.490365 B = 8297.333394 C = 9452.280930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.547 3.453 13 O -0.515 6.515 14 C -0.077 4.077 15 C -0.122 4.122 16 C 0.182 3.818 17 N -0.568 5.568 18 C 0.081 3.919 19 C 0.093 3.907 20 N -0.737 5.737 21 C 0.701 3.299 22 O -0.567 6.567 23 C -0.131 4.131 24 C -0.088 4.088 25 C -0.020 4.020 26 Cl -0.043 7.043 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.433 0.567 39 H 0.167 0.833 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.398 -15.948 8.431 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.324 5.324 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.332 3.668 13 O -0.391 6.391 14 C -0.082 4.082 15 C -0.144 4.144 16 C 0.088 3.912 17 N -0.295 5.295 18 C -0.042 4.042 19 C -0.032 4.032 20 N -0.399 5.399 21 C 0.402 3.598 22 O -0.444 6.444 23 C -0.152 4.152 24 C -0.107 4.107 25 C -0.049 4.049 26 Cl -0.013 7.013 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.276 0.724 39 H 0.184 0.816 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.392 -16.121 7.995 23.679 hybrid contribution -0.177 0.344 -0.840 0.925 sum -15.569 -15.776 7.155 23.291 Atomic orbital electron populations 1.21869 0.81642 1.02831 1.00415 1.48060 1.06143 1.07469 1.70721 1.19342 0.92659 0.77583 0.97710 1.21473 1.36454 1.06250 0.92264 0.92269 1.24919 0.95313 0.96377 0.97408 1.69945 1.38473 1.14327 1.30636 0.86462 0.78134 0.78311 0.84686 1.19705 1.20968 1.20847 1.17915 0.87236 0.82935 0.78710 1.90801 1.12937 1.86557 1.48833 1.19885 0.95659 0.95991 0.96627 1.20843 0.95602 0.95961 1.01967 1.17251 0.86862 0.94407 0.92663 1.44442 1.27300 1.23460 1.34267 1.22666 0.96284 0.95589 0.89674 1.22417 0.98243 0.86464 0.96088 1.45078 1.31743 1.26418 1.36650 1.15801 0.80155 0.82010 0.81803 1.90867 1.74664 1.39476 1.39436 1.21647 0.97213 1.00898 0.95440 1.20913 0.94656 0.95427 0.99693 1.20952 0.92682 0.95209 0.96054 1.98416 1.40507 1.95868 1.66551 0.93698 0.90811 0.91822 0.94799 0.93484 0.92779 0.84215 0.88676 0.88590 0.89221 0.89339 0.72432 0.81626 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 9.08 59.85 0.54 1.74 16 2 N -0.59 -12.53 2.86 -184.10 -0.53 -13.06 16 3 C 0.25 6.35 5.23 -5.19 -0.03 6.33 16 4 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 C 0.55 11.74 6.76 -12.36 -0.08 11.65 16 13 O -0.52 -13.12 15.36 5.31 0.08 -13.04 16 14 C -0.08 -1.32 4.96 -104.96 -0.52 -1.84 16 15 C -0.12 -1.62 6.96 -38.98 -0.27 -1.89 16 16 C 0.18 2.28 6.61 -83.71 -0.55 1.72 16 17 N -0.57 -5.68 3.16 -118.27 -0.37 -6.06 16 18 C 0.08 0.44 6.49 -3.16 -0.02 0.42 16 19 C 0.09 0.30 8.06 -3.16 -0.03 0.28 16 20 N -0.74 -4.61 6.37 -64.70 -0.41 -5.02 16 21 C 0.70 7.53 8.52 -88.40 -0.75 6.78 16 22 O -0.57 -8.09 14.75 5.29 0.08 -8.02 16 23 C -0.13 -1.74 9.28 -39.32 -0.37 -2.11 16 24 C -0.09 -1.19 9.81 -39.63 -0.39 -1.58 16 25 C -0.02 -0.33 6.34 -39.06 -0.25 -0.58 16 26 Cl -0.04 -0.78 27.14 -51.86 -1.41 -2.19 16 27 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 28 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 29 H 0.06 0.89 5.42 -51.93 -0.28 0.61 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.14 1.56 5.74 -52.49 -0.30 1.26 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.43 1.88 8.96 -40.82 -0.37 1.51 16 39 H 0.17 2.27 5.26 -52.49 -0.28 1.99 16 40 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -36.80 350.03 -9.21 -46.01 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.50 Total: -2.56 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -3.13 Total: 7.38 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.58 Total: -49.84 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.16 Total: -21.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.41 Total: -2.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.80 -9.21 -46.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173232502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.898 kcal (2) G-P(sol) polarization free energy of solvation -36.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds