Wall clock time and date at job start Tue Mar 31 2020 20:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99992 * 2 1 4 4 C 1.50700 * 109.47207 * 269.99907 * 3 2 1 5 5 H 1.07998 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31524 * 119.99925 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00263 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46551 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46981 * 120.00073 * 8 6 4 11 11 H 1.48501 * 109.47071 * 239.99952 * 8 6 4 12 12 C 1.34771 * 120.00024 * 179.97438 * 2 1 3 13 13 O 1.21567 * 120.00030 * 185.30684 * 12 2 1 14 14 C 1.47777 * 120.00229 * 5.31132 * 12 2 1 15 15 C 1.39553 * 120.11951 * 311.70141 * 14 12 2 16 16 C 1.38538 * 119.79099 * 180.24734 * 15 14 12 17 17 N 1.40033 * 119.97942 * 179.75003 * 16 15 14 18 18 C 1.47045 * 125.40843 * 353.65902 * 17 16 15 19 19 C 1.54112 * 103.86065 * 179.86992 * 18 17 16 20 20 N 1.47050 * 103.85899 * 0.37310 * 19 18 17 21 21 C 1.33945 * 125.40544 * 173.96270 * 17 16 15 22 22 O 1.21587 * 123.04884 * 359.97438 * 21 17 16 23 23 C 1.39011 * 120.03927 * 359.47964 * 16 15 14 24 24 C 1.38160 * 120.24528 * 0.27123 * 23 16 15 25 25 C 1.38177 * 120.21150 * 359.97438 * 24 23 16 26 26 Cl 1.73608 * 120.02064 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47215 * 275.26228 * 1 2 3 28 28 H 1.08999 * 109.46940 * 35.26245 * 1 2 3 29 29 H 1.08999 * 109.46984 * 155.25875 * 1 2 3 30 30 H 1.09006 * 109.47053 * 30.00191 * 3 2 1 31 31 H 1.09003 * 109.47470 * 149.99601 * 3 2 1 32 32 H 0.97001 * 119.99492 * 180.02562 * 7 6 4 33 33 H 1.07995 * 120.10508 * 0.02562 * 15 14 12 34 34 H 1.09000 * 110.55277 * 298.58929 * 18 17 16 35 35 H 1.08998 * 110.55022 * 61.40536 * 18 17 16 36 36 H 1.08996 * 110.75498 * 241.68015 * 19 18 17 37 37 H 1.08998 * 110.46464 * 118.92382 * 19 18 17 38 38 H 0.97007 * 125.41012 * 179.75539 * 20 19 18 39 39 H 1.07999 * 119.87526 * 180.29520 * 23 16 15 40 40 H 1.08010 * 119.89168 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4368 3.4176 -3.4339 9 1 2.8599 2.4170 -4.3672 10 1 2.7987 4.7382 -3.6668 11 1 4.8993 3.5264 -3.6675 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1694 0.0979 14 6 1.4048 -2.4443 -0.1174 15 6 0.2907 -2.6885 0.6868 16 6 -0.3893 -3.8902 0.5743 17 7 -1.5046 -4.1415 1.3829 18 6 -1.9766 -3.2780 2.4756 19 6 -3.2177 -4.0136 3.0175 20 7 -3.3077 -5.2179 2.1786 21 6 -2.3074 -5.2094 1.2877 22 8 -2.1435 -6.0911 0.4666 23 6 0.0314 -4.8444 -0.3449 24 6 1.1310 -4.6022 -1.1455 25 6 1.8199 -3.4092 -1.0383 26 17 3.2014 -3.1103 -2.0463 27 1 -0.3633 0.0942 1.0233 28 1 -0.3633 0.8391 -0.5933 29 1 -0.3633 -0.9333 -0.4301 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5139 32 1 4.0295 4.4444 -0.8504 33 1 -0.0381 -1.9445 1.3972 34 1 -1.2142 -3.1889 3.2494 35 1 -2.2530 -2.2950 2.0943 36 1 -4.1111 -3.3998 2.9029 37 1 -3.0732 -4.2856 4.0631 38 1 -3.9840 -5.9088 2.2577 39 1 -0.5036 -5.7784 -0.4338 40 1 1.4527 -5.3474 -1.8581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173232502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:43 Heat of formation + Delta-G solvation = -32.294476 kcal Electronic energy + Delta-G solvation = -26759.961426 eV Core-core repulsion = 22793.838795 eV Total energy + Delta-G solvation = -3966.122631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59699 -41.18339 -39.37457 -37.72748 -37.48254 -36.61010 -35.23381 -34.74762 -32.61107 -30.85029 -29.73848 -29.59063 -27.52125 -25.87059 -24.79651 -24.33573 -23.07738 -22.01014 -20.31311 -18.97125 -18.66925 -18.31028 -17.97410 -17.72410 -17.33674 -16.98816 -16.66206 -16.09364 -15.93431 -15.50273 -15.10896 -15.08318 -14.87953 -14.66875 -14.51648 -14.13224 -13.82083 -13.69551 -13.63023 -13.45607 -13.18039 -13.09578 -12.87968 -12.72458 -12.60013 -12.43219 -12.21053 -11.97413 -11.68205 -11.27233 -11.10784 -10.72384 -10.63358 -10.20116 -10.12710 -9.45298 -8.94012 -8.21899 -6.35266 -0.24931 -0.00164 1.10612 1.30519 1.35762 1.38765 1.50008 1.69055 1.91543 2.26660 2.41354 2.60741 2.84901 3.08180 3.38014 3.45459 3.62087 3.88505 3.99584 4.14261 4.17395 4.33132 4.39913 4.55900 4.63930 4.70286 4.73632 4.80714 4.92039 4.93698 5.00708 5.10837 5.18790 5.23682 5.27824 5.55841 5.78116 5.82901 6.07222 6.09536 6.30374 6.65098 6.74147 7.25041 7.35129 7.40351 8.85269 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003374 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.490365 B = 8297.333394 C = 9452.280930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.543 3.457 13 O -0.569 6.569 14 C -0.094 4.094 15 C -0.107 4.107 16 C 0.196 3.804 17 N -0.571 5.571 18 C 0.066 3.934 19 C 0.096 3.904 20 N -0.723 5.723 21 C 0.690 3.310 22 O -0.611 6.611 23 C -0.131 4.131 24 C -0.076 4.076 25 C -0.040 4.040 26 Cl -0.070 7.070 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.442 0.558 39 H 0.167 0.833 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.473 -16.394 9.335 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.328 5.328 3 C 0.141 3.859 4 C -0.580 4.580 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.331 3.669 13 O -0.449 6.449 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.100 3.900 17 N -0.297 5.297 18 C -0.055 4.055 19 C -0.028 4.028 20 N -0.384 5.384 21 C 0.391 3.609 22 O -0.491 6.491 23 C -0.151 4.151 24 C -0.096 4.096 25 C -0.069 4.069 26 Cl -0.041 7.041 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.286 0.714 39 H 0.184 0.816 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.571 -16.561 8.959 26.447 hybrid contribution 0.637 0.406 -0.990 1.246 sum -17.934 -16.155 7.968 25.419 Atomic orbital electron populations 1.22182 0.78043 1.03691 1.03139 1.48034 1.08379 1.05952 1.70433 1.18814 0.91391 0.79701 0.96033 1.21706 1.36785 1.06418 0.93074 0.93233 1.25752 0.94927 0.96447 1.01565 1.70042 1.38956 1.14791 1.32680 0.85470 0.77885 0.78464 0.79641 1.19501 1.19139 1.20840 1.18521 0.86886 0.84211 0.77293 1.90758 1.15466 1.87537 1.51136 1.19551 0.97290 0.94126 0.98873 1.20870 0.94029 0.96745 1.01258 1.17221 0.87138 0.93497 0.92127 1.44538 1.26275 1.24170 1.34679 1.23143 0.97565 0.96036 0.88722 1.22721 0.98296 0.85164 0.96597 1.45095 1.30331 1.27451 1.35566 1.16113 0.81009 0.81668 0.82130 1.90832 1.75867 1.41031 1.41400 1.21762 0.96811 1.01131 0.95439 1.21055 0.94124 0.94588 0.99786 1.21093 0.92701 0.96413 0.96668 1.98398 1.42210 1.96083 1.67430 0.89597 0.91399 0.89831 0.94894 0.97826 0.92382 0.81696 0.87401 0.86756 0.86559 0.86821 0.71353 0.81642 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 9.08 127.77 1.16 3.24 16 2 N -0.60 -25.44 2.86 -854.65 -2.44 -27.88 16 3 C 0.26 13.95 5.23 85.63 0.45 14.39 16 4 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.71 5.46 84.65 0.46 1.17 16 7 N -0.92 -55.56 13.29 21.45 0.28 -55.28 16 8 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.54 23.81 6.76 86.77 0.59 24.39 16 13 O -0.57 -30.43 15.36 -3.93 -0.06 -30.49 16 14 C -0.09 -3.17 4.96 -20.09 -0.10 -3.27 16 15 C -0.11 -2.61 6.96 22.66 0.16 -2.45 16 16 C 0.20 4.42 6.61 38.09 0.25 4.68 16 17 N -0.57 -9.60 3.16 -646.83 -2.04 -11.64 16 18 C 0.07 0.43 6.49 86.65 0.56 0.99 16 19 C 0.10 0.16 8.06 86.65 0.70 0.86 16 20 N -0.72 -6.52 6.37 -477.34 -3.04 -9.57 16 21 C 0.69 13.05 8.52 179.57 1.53 14.58 16 22 O -0.61 -16.60 14.75 -3.99 -0.06 -16.66 16 23 C -0.13 -3.27 9.28 22.44 0.21 -3.06 16 24 C -0.08 -2.02 9.81 22.24 0.22 -1.80 16 25 C -0.04 -1.33 6.34 22.61 0.14 -1.19 16 26 Cl -0.07 -2.66 27.14 -2.72 -0.07 -2.73 16 27 H 0.09 1.81 7.67 -2.39 -0.02 1.79 16 28 H 0.07 2.07 8.11 -2.39 -0.02 2.06 16 29 H 0.08 2.11 5.42 -2.39 -0.01 2.10 16 30 H 0.03 1.74 8.07 -2.38 -0.02 1.72 16 31 H 0.00 0.22 7.35 -2.39 -0.02 0.20 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.17 3.06 5.74 -2.91 -0.02 3.05 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 0.36 8.10 -2.39 -0.02 0.34 16 36 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.44 2.45 8.96 -92.70 -0.83 1.62 16 39 H 0.17 4.33 5.26 -2.91 -0.02 4.31 16 40 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -84.78 350.03 1.44 -83.34 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 0.28 Total: 1.98 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 6.57 Total: 21.43 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -7.24 Total: -104.37 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.12 Total: -47.15 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -84.78 1.44 -83.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173232502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.046 kcal (2) G-P(sol) polarization free energy of solvation -84.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds