Wall clock time and date at job start Tue Mar 31 2020 19:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47375 * 269.97365 * 6 5 4 8 8 C 1.42895 * 114.00272 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47048 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00166 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99850 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99970 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46975 * 89.99891 * 12 11 9 14 14 H 1.08001 * 120.00685 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99927 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00121 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47557 * 89.99668 * 17 15 13 19 19 H 1.48504 * 109.47289 * 210.00297 * 17 15 13 20 20 H 1.48501 * 109.47112 * 329.99828 * 17 15 13 21 21 C 1.46506 * 120.00057 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.46696 * 90.00035 * 21 11 9 23 23 F 1.39907 * 109.47131 * 60.00133 * 22 21 11 24 24 F 1.39900 * 109.46878 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47317 * 300.00230 * 22 21 11 26 26 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 27 27 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 28 28 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 29 29 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 30 30 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 31 31 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 32 32 H 1.09003 * 109.47449 * 300.00393 * 8 7 6 33 33 H 1.09002 * 109.47297 * 59.99776 * 8 7 6 34 34 H 1.09004 * 109.47207 * 209.99900 * 12 11 9 35 35 H 1.09000 * 109.46824 * 330.00101 * 12 11 9 36 36 H 0.96999 * 120.00299 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.46977 * 210.00168 * 21 11 9 38 38 H 1.08998 * 109.47067 * 330.00160 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 8 5.1971 -1.6954 -1.3475 8 6 6.3951 -2.4662 -1.4603 9 6 6.7217 -2.6768 -2.9163 10 8 5.9999 -2.2122 -3.7731 11 7 7.8159 -3.3815 -3.2664 12 6 8.1337 -3.5858 -4.6818 13 6 9.0121 -2.4614 -5.1668 14 1 9.3047 -1.6735 -4.4885 15 6 9.4421 -2.4383 -6.4766 16 7 9.0863 -3.3978 -7.3026 17 14 10.5314 -1.0449 -7.0776 18 1 11.9570 -1.4089 -6.8765 19 1 10.2801 -0.8077 -8.5219 20 1 10.2231 0.1898 -6.3123 21 6 8.6882 -3.9423 -2.2315 22 6 8.2109 -5.3504 -1.8704 23 9 8.2545 -6.1636 -3.0080 24 9 9.0441 -5.8861 -0.8825 25 9 6.8980 -5.2892 -1.3910 26 7 2.3030 -1.0840 -0.0002 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 5.5843 -0.8849 0.5130 31 1 4.6208 -2.3815 0.5141 32 1 7.2155 -1.9353 -0.9773 33 1 6.2526 -3.4323 -0.9760 34 1 8.6572 -4.5341 -4.8035 35 1 7.2114 -3.6028 -5.2625 36 1 9.3885 -3.3814 -8.2242 37 1 9.7110 -3.9899 -2.6050 38 1 8.6542 -3.3087 -1.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174449465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:54 Heat of formation + Delta-G solvation = -152.049945 kcal Electronic energy + Delta-G solvation = -29489.507035 eV Core-core repulsion = 24535.625513 eV Total energy + Delta-G solvation = -4953.881522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.96633 -47.54941 -47.37599 -45.79311 -39.56409 -37.85895 -36.27078 -35.39629 -33.51214 -32.85342 -29.85162 -29.46918 -29.07558 -27.59416 -26.05251 -23.80141 -23.41697 -22.81041 -21.80327 -19.36948 -18.46405 -18.39254 -18.36571 -17.92154 -17.56709 -17.02230 -16.52870 -16.31081 -16.14612 -15.43977 -15.15705 -14.53658 -14.36167 -14.25930 -14.22904 -14.02873 -13.88292 -13.84662 -13.62708 -13.54938 -13.28586 -12.97144 -12.82788 -12.48435 -12.39145 -12.12308 -12.09297 -11.87722 -11.60414 -11.34060 -11.26511 -11.02334 -10.70075 -10.27514 -10.20671 -10.03042 -9.83125 -9.20482 -8.53128 -8.14258 -6.14342 -4.20618 0.80472 1.91563 2.42243 2.69932 3.02713 3.17222 3.25155 3.33089 3.35901 3.39069 3.76770 3.88090 3.99958 4.11969 4.35531 4.38843 4.59097 4.72120 4.79303 4.89851 4.92361 5.10852 5.12626 5.15179 5.19023 5.21187 5.33246 5.45330 5.63005 5.76073 6.49116 6.83439 7.16366 7.30132 7.79748 7.92966 7.93837 8.07075 8.63577 8.83698 9.45012 10.94025 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003278 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.225098 B = 8538.785817 C =10476.974336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.381 5.381 4 O 0.089 5.911 5 C 0.190 3.810 6 C 0.154 3.846 7 O -0.352 6.352 8 C 0.032 3.968 9 C 0.513 3.487 10 O -0.495 6.495 11 N -0.594 5.594 12 C 0.244 3.756 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.071 3.929 22 C 0.427 3.573 23 F -0.172 7.172 24 F -0.186 7.186 25 F -0.187 7.187 26 N -0.462 5.462 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.134 0.866 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 0.135 19.406 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.088 5.088 4 O 0.029 5.971 5 C -0.031 4.031 6 C 0.075 3.925 7 O -0.269 6.269 8 C -0.047 4.047 9 C 0.299 3.701 10 O -0.368 6.368 11 N -0.328 5.328 12 C 0.126 3.874 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.057 4.057 22 C 0.371 3.629 23 F -0.153 7.153 24 F -0.168 7.168 25 F -0.169 7.169 26 N -0.198 5.198 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.340 0.888 18.525 19.946 hybrid contribution 0.923 0.272 -0.157 0.975 sum -6.417 1.161 18.368 19.491 Atomic orbital electron populations 1.20154 0.82740 1.04603 1.04554 1.25947 1.00712 0.83380 1.00611 1.74646 0.89367 1.23929 1.20899 1.85303 1.22343 1.24574 1.64917 1.28173 0.96240 0.82112 0.96571 1.20599 0.87916 0.97293 0.86682 1.88080 1.42455 1.73675 1.22677 1.22736 0.87650 0.97168 0.97190 1.19890 0.81351 0.79395 0.89507 1.90753 1.47951 1.46577 1.51502 1.48174 1.23576 1.52095 1.08993 1.19549 0.97877 0.97464 0.72501 1.21369 1.30986 1.08940 0.96122 0.92145 1.24936 0.96363 0.96219 0.96410 1.69928 1.44796 1.32494 1.05600 0.86460 0.80308 0.82271 0.78176 1.20551 1.21030 1.19802 1.22675 0.99136 0.88244 0.95631 1.21738 0.75142 0.91426 0.74567 1.93237 1.96015 1.75617 1.50460 1.93166 1.71849 1.88401 1.63393 1.93086 1.38678 1.96492 1.88625 1.71900 0.99669 1.29442 1.18797 0.89125 0.88931 0.89481 0.88872 0.88020 0.89837 0.88950 0.93857 0.93180 0.92492 0.84805 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.17 2.06 8.22 -156.37 -1.28 0.78 16 3 N -0.38 -5.21 12.16 30.90 0.38 -4.83 16 4 O 0.09 1.18 11.31 18.11 0.20 1.38 16 5 C 0.19 2.37 8.14 -13.06 -0.11 2.27 16 6 C 0.15 1.49 6.56 36.00 0.24 1.73 16 7 O -0.35 -5.18 9.86 -55.14 -0.54 -5.73 16 8 C 0.03 0.42 4.90 36.01 0.18 0.60 16 9 C 0.51 9.98 7.42 -10.98 -0.08 9.90 16 10 O -0.50 -12.37 16.08 -14.35 -0.23 -12.60 16 11 N -0.59 -11.28 2.37 -175.06 -0.42 -11.69 16 12 C 0.24 5.95 4.96 -5.20 -0.03 5.93 16 13 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.07 0.94 5.33 -4.04 -0.02 0.92 16 22 C 0.43 5.70 3.29 37.16 0.12 5.82 16 23 F -0.17 -2.83 16.23 2.25 0.04 -2.79 16 24 F -0.19 -2.20 17.32 2.25 0.04 -2.16 16 25 F -0.19 -2.49 14.29 2.25 0.03 -2.45 16 26 N -0.46 -6.25 11.55 -9.87 -0.11 -6.36 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.78 7.40 -51.93 -0.38 0.39 16 33 H 0.09 1.01 5.48 -51.93 -0.28 0.73 16 34 H 0.04 1.07 7.26 -51.93 -0.38 0.69 16 35 H 0.05 1.41 7.42 -51.93 -0.39 1.03 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.13 1.70 8.07 -51.93 -0.42 1.28 16 38 H 0.11 0.98 6.44 -51.93 -0.33 0.64 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -35.78 348.38 -4.52 -40.30 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.84 Total: -4.37 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -1.03 Total: 14.91 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.58 Total: -47.76 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.57 Total: -16.94 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.78 -4.52 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174449465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.750 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds