Wall clock time and date at job start Tue Mar 31 2020 19:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47375 * 269.97365 * 6 5 4 8 8 C 1.42895 * 114.00272 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47048 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00166 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99850 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99970 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46975 * 89.99891 * 12 11 9 14 14 H 1.08001 * 120.00685 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99927 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00121 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47557 * 89.99668 * 17 15 13 19 19 H 1.48504 * 109.47289 * 210.00297 * 17 15 13 20 20 H 1.48501 * 109.47112 * 329.99828 * 17 15 13 21 21 C 1.46506 * 120.00057 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.46696 * 90.00035 * 21 11 9 23 23 F 1.39907 * 109.47131 * 60.00133 * 22 21 11 24 24 F 1.39900 * 109.46878 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47317 * 300.00230 * 22 21 11 26 26 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 27 27 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 28 28 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 29 29 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 30 30 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 31 31 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 32 32 H 1.09003 * 109.47449 * 300.00393 * 8 7 6 33 33 H 1.09002 * 109.47297 * 59.99776 * 8 7 6 34 34 H 1.09004 * 109.47207 * 209.99900 * 12 11 9 35 35 H 1.09000 * 109.46824 * 330.00101 * 12 11 9 36 36 H 0.96999 * 120.00299 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.46977 * 210.00168 * 21 11 9 38 38 H 1.08998 * 109.47067 * 330.00160 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 8 5.1971 -1.6954 -1.3475 8 6 6.3951 -2.4662 -1.4603 9 6 6.7217 -2.6768 -2.9163 10 8 5.9999 -2.2122 -3.7731 11 7 7.8159 -3.3815 -3.2664 12 6 8.1337 -3.5858 -4.6818 13 6 9.0121 -2.4614 -5.1668 14 1 9.3047 -1.6735 -4.4885 15 6 9.4421 -2.4383 -6.4766 16 7 9.0863 -3.3978 -7.3026 17 14 10.5314 -1.0449 -7.0776 18 1 11.9570 -1.4089 -6.8765 19 1 10.2801 -0.8077 -8.5219 20 1 10.2231 0.1898 -6.3123 21 6 8.6882 -3.9423 -2.2315 22 6 8.2109 -5.3504 -1.8704 23 9 8.2545 -6.1636 -3.0080 24 9 9.0441 -5.8861 -0.8825 25 9 6.8980 -5.2892 -1.3910 26 7 2.3030 -1.0840 -0.0002 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 5.5843 -0.8849 0.5130 31 1 4.6208 -2.3815 0.5141 32 1 7.2155 -1.9353 -0.9773 33 1 6.2526 -3.4323 -0.9760 34 1 8.6572 -4.5341 -4.8035 35 1 7.2114 -3.6028 -5.2625 36 1 9.3885 -3.3814 -8.2242 37 1 9.7110 -3.9899 -2.6050 38 1 8.6542 -3.3087 -1.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174449465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:53 Heat of formation + Delta-G solvation = -178.671208 kcal Electronic energy + Delta-G solvation = -29490.661420 eV Core-core repulsion = 24535.625513 eV Total energy + Delta-G solvation = -4955.035907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.05186 -48.59810 -48.51804 -46.72609 -40.96932 -38.93605 -37.19262 -36.96323 -34.87589 -34.39061 -31.20078 -30.49559 -30.07425 -28.82478 -27.47661 -24.78001 -24.65378 -24.48433 -22.66272 -20.73831 -19.53150 -19.48397 -19.38574 -19.15412 -18.71945 -18.33072 -17.97264 -17.56001 -17.18114 -16.87738 -16.43557 -15.92999 -15.63093 -15.44487 -15.39886 -15.03184 -14.96134 -14.72449 -14.67625 -14.54657 -14.51182 -14.30891 -13.92093 -13.63876 -13.52685 -13.39707 -13.18166 -13.08173 -12.92674 -12.85429 -12.54787 -12.50423 -12.21637 -12.21098 -11.76331 -11.14037 -10.89574 -10.74895 -10.62710 -9.80802 -8.22308 -6.36394 -0.12554 0.99387 1.40038 1.42848 1.43997 1.51616 1.55489 1.79273 1.97666 2.40201 2.51113 2.84678 2.91376 2.98972 3.07060 3.10975 3.30734 3.59978 3.83904 3.95800 4.15299 4.19414 4.23377 4.28969 4.44040 4.45383 4.54146 4.66534 4.81500 4.90246 5.04736 5.20280 5.38800 5.71170 5.80775 6.02098 6.41782 6.73097 7.00563 7.17532 7.35829 8.85990 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003278 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.225098 B = 8538.785817 C =10476.974336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.160 3.840 3 N -0.405 5.405 4 O 0.077 5.923 5 C 0.188 3.812 6 C 0.150 3.850 7 O -0.395 6.395 8 C 0.047 3.953 9 C 0.501 3.499 10 O -0.568 6.568 11 N -0.599 5.599 12 C 0.260 3.740 13 C -0.543 4.543 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.270 1.270 21 C 0.066 3.934 22 C 0.433 3.567 23 F -0.196 7.196 24 F -0.172 7.172 25 F -0.185 7.185 26 N -0.488 5.488 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.035 0.965 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.140 0.860 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 0.744 22.295 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.115 5.115 4 O 0.020 5.980 5 C -0.033 4.033 6 C 0.073 3.927 7 O -0.314 6.314 8 C -0.032 4.032 9 C 0.290 3.710 10 O -0.446 6.446 11 N -0.331 5.331 12 C 0.140 3.860 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.059 4.059 22 C 0.377 3.623 23 F -0.178 7.178 24 F -0.153 7.153 25 F -0.167 7.167 26 N -0.224 5.224 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.158 0.842 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.049 1.470 21.487 22.371 hybrid contribution 0.482 0.021 -0.997 1.108 sum -5.566 1.491 20.490 21.285 Atomic orbital electron populations 1.20381 0.80122 1.06178 1.05407 1.26723 1.02345 0.82868 0.99275 1.74629 0.89722 1.24788 1.22371 1.85263 1.22331 1.25134 1.65300 1.28868 0.97121 0.82006 0.95311 1.21115 0.87888 0.98909 0.84824 1.88004 1.43234 1.74161 1.25951 1.22720 0.89075 0.99315 0.92062 1.21151 0.80094 0.77674 0.92082 1.90714 1.50218 1.49497 1.54161 1.47996 1.24700 1.52308 1.08141 1.18919 0.94764 0.96608 0.75752 1.21718 1.30637 1.09342 0.96451 0.91617 1.25868 0.97900 0.98662 0.96779 1.70063 1.46308 1.34538 1.05934 0.85401 0.79175 0.79012 0.77131 1.18621 1.21399 1.19471 1.23109 0.98096 0.88690 0.96010 1.21640 0.75363 0.91075 0.74208 1.93200 1.96143 1.76386 1.52045 1.93200 1.71371 1.88195 1.62552 1.93088 1.38650 1.96449 1.88479 1.71926 1.00471 1.30169 1.19842 0.88468 0.87442 0.87820 0.84398 0.85209 0.84625 0.86252 0.94692 0.98481 0.92470 0.84164 0.81417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.16 3.89 8.22 138.46 1.14 5.02 16 3 N -0.40 -10.94 12.16 -60.32 -0.73 -11.67 16 4 O 0.08 1.99 11.31 74.85 0.85 2.83 16 5 C 0.19 4.43 8.14 88.38 0.72 5.15 16 6 C 0.15 2.39 6.56 71.24 0.47 2.86 16 7 O -0.40 -10.76 9.86 -129.94 -1.28 -12.04 16 8 C 0.05 1.06 4.90 71.24 0.35 1.41 16 9 C 0.50 19.20 7.42 87.66 0.65 19.85 16 10 O -0.57 -29.52 16.08 16.01 0.26 -29.26 16 11 N -0.60 -22.36 2.37 -826.15 -1.96 -24.32 16 12 C 0.26 13.16 4.96 85.63 0.42 13.58 16 13 C -0.54 -29.26 9.39 25.60 0.24 -29.02 16 14 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 15 C 0.01 0.40 5.46 84.66 0.46 0.86 16 16 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 17 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.07 1.55 5.33 86.38 0.46 2.01 16 22 C 0.43 10.51 3.29 71.98 0.24 10.74 16 23 F -0.20 -6.39 16.23 44.97 0.73 -5.66 16 24 F -0.17 -3.48 17.32 44.97 0.78 -2.70 16 25 F -0.19 -4.40 14.29 44.97 0.64 -3.76 16 26 N -0.49 -12.77 11.55 -303.19 -3.50 -16.27 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 1.67 7.40 -2.39 -0.02 1.66 16 33 H 0.12 2.07 5.48 -2.39 -0.01 2.05 16 34 H 0.04 1.80 7.26 -2.39 -0.02 1.79 16 35 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.14 3.17 8.07 -2.39 -0.02 3.15 16 38 H 0.17 1.98 6.44 -2.39 -0.02 1.96 16 Total: -1.00 -84.90 348.38 5.12 -79.78 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 1.13 Total: 0.24 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 5.90 Total: 32.30 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.91 Total: -107.04 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.18 Total: -38.47 kcal Atomic # 9 Polarization: -14.26 SS G_CDS: 2.15 Total: -12.11 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -84.90 5.12 -79.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174449465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.890 kcal (2) G-P(sol) polarization free energy of solvation -84.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds