Wall clock time and date at job start Tue Mar 31 2020 19:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00299 * 2 1 4 4 N 1.46490 * 109.47341 * 125.00463 * 3 2 1 5 5 N 1.40027 * 126.26432 * 90.02029 * 4 3 2 6 6 N 1.23646 * 109.31706 * 180.02562 * 5 4 3 7 7 N 1.40026 * 109.32082 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.25849 * 179.73475 * 7 6 5 9 9 N 1.46901 * 109.46862 * 90.02576 * 8 7 6 10 10 C 1.46903 * 110.99979 * 169.99575 * 9 8 7 11 11 C 1.50697 * 109.47474 * 286.12507 * 10 9 8 12 12 H 1.08007 * 120.00022 * 3.88793 * 11 10 9 13 13 C 1.37874 * 120.00543 * 183.88897 * 11 10 9 14 14 N 1.31520 * 119.99452 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00597 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46871 * 60.00156 * 15 13 11 17 17 H 1.48496 * 109.47227 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47094 * 300.00293 * 15 13 11 19 19 C 1.46900 * 111.00292 * 293.95554 * 9 8 7 20 20 C 1.52998 * 109.47239 * 162.38223 * 19 9 8 21 21 F 1.39907 * 109.47350 * 66.46677 * 20 19 9 22 22 F 1.39895 * 109.46991 * 186.45913 * 20 19 9 23 23 F 1.39894 * 109.47280 * 306.46320 * 20 19 9 24 24 C 1.35055 * 107.47812 * 359.97438 * 7 6 5 25 25 S 1.71195 * 126.79442 * 179.97438 * 24 7 6 26 26 H 1.07999 * 120.00089 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99664 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99664 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46816 * 4.99905 * 3 2 1 30 30 H 1.09009 * 109.47029 * 245.00647 * 3 2 1 31 31 H 1.08998 * 109.46877 * 210.02471 * 8 7 6 32 32 H 1.08996 * 109.47618 * 330.03073 * 8 7 6 33 33 H 1.09000 * 109.46909 * 46.12203 * 10 9 8 34 34 H 1.08999 * 109.46854 * 166.12252 * 10 9 8 35 35 H 0.97001 * 119.99867 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.46661 * 282.37613 * 19 9 8 37 37 H 1.08991 * 109.47451 * 42.37837 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 7 4.3208 0.8848 1.1231 6 7 4.8161 1.0534 2.2435 7 7 3.8601 1.6262 3.0912 8 6 4.0510 1.9769 4.5007 9 7 4.5412 3.3582 4.5995 10 6 4.5198 3.8261 5.9918 11 6 3.0976 4.1008 6.4076 12 1 2.2853 3.8842 5.7296 13 6 2.8333 4.6287 7.6536 14 7 3.8225 4.8930 8.4791 15 14 1.0705 4.9699 8.1688 16 1 0.2936 3.7046 8.1431 17 1 1.0564 5.5322 9.5431 18 1 0.4600 5.9447 7.2293 19 6 5.8868 3.4818 4.0232 20 6 6.1868 4.9550 3.7395 21 9 6.2676 5.6556 4.9479 22 9 7.4037 5.0601 3.0574 23 9 5.1636 5.4965 2.9541 24 6 2.7282 1.7912 2.3732 25 16 1.2491 2.4511 2.9279 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1315 0.0896 30 1 2.6213 1.4025 -0.9315 31 1 3.1014 1.8898 5.0286 32 1 4.7790 1.3003 4.9482 33 1 4.9460 3.0598 6.6393 34 1 5.1063 4.7409 6.0767 35 1 3.6365 5.2640 9.3558 36 1 6.6210 3.0906 4.7276 37 1 5.9374 2.9152 3.0935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176058097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:44 Heat of formation + Delta-G solvation = 21.419028 kcal Electronic energy + Delta-G solvation = -27900.268774 eV Core-core repulsion = 23428.955053 eV Total energy + Delta-G solvation = -4471.313721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.65609 -47.23460 -47.03970 -43.09469 -37.70893 -36.45432 -34.32246 -33.26614 -32.58408 -29.52047 -28.17299 -27.02933 -25.29697 -24.00829 -23.24805 -22.83061 -21.15415 -20.42365 -18.51867 -18.10764 -17.94851 -17.29561 -17.14391 -16.96266 -16.49569 -16.31694 -15.16622 -14.87305 -14.32244 -14.27674 -14.09778 -14.04697 -13.87729 -13.68335 -13.50980 -13.48235 -13.30379 -13.24006 -13.06293 -12.42416 -12.19839 -12.07630 -11.82718 -11.78046 -11.46698 -11.30968 -11.10473 -10.76203 -10.72917 -10.60047 -9.94775 -9.92783 -9.33036 -8.47792 -8.02855 -7.71685 -7.40180 -6.06114 -4.07482 0.69723 0.85817 0.94212 1.82074 2.29344 2.50584 3.09185 3.40602 3.42765 3.49811 3.70179 3.96628 4.22447 4.35899 4.40127 4.43382 4.50579 4.74537 4.89852 4.93302 5.19911 5.26644 5.29548 5.33271 5.41673 5.50735 5.58120 5.72474 5.93041 6.20877 6.31313 6.54930 6.87379 7.35127 7.51943 7.54855 7.98976 8.25059 9.03360 9.58149 11.04427 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.005155 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.233585 B = 5430.793894 C = 7464.237092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.196 4.196 3 C 0.170 3.830 4 N -0.413 5.413 5 N 0.009 4.991 6 N 0.007 4.993 7 N -0.400 5.400 8 C 0.314 3.686 9 N -0.533 5.533 10 C 0.175 3.825 11 C -0.514 4.514 12 H 0.079 0.921 13 C 0.062 3.938 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.274 1.274 19 C 0.001 3.999 20 C 0.460 3.540 21 F -0.167 7.167 22 F -0.194 7.194 23 F -0.173 7.173 24 C 0.463 3.537 25 S -0.487 6.487 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.263 0.737 36 H 0.081 0.919 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -9.523 -15.789 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.215 4.215 3 C 0.050 3.950 4 N -0.218 5.218 5 N 0.015 4.985 6 N 0.013 4.987 7 N -0.206 5.206 8 C 0.105 3.895 9 N -0.260 5.260 10 C 0.052 3.948 11 C -0.552 4.552 12 H 0.097 0.903 13 C -0.140 4.140 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.200 1.200 17 H -0.216 1.216 18 H -0.200 1.200 19 C -0.130 4.130 20 C 0.405 3.595 21 F -0.148 7.148 22 F -0.176 7.176 23 F -0.155 7.155 24 C 0.107 3.893 25 S -0.361 6.361 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.020 0.980 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.703 -9.181 -15.899 18.438 hybrid contribution 0.026 -0.099 0.644 0.652 sum 1.729 -9.280 -15.255 17.940 Atomic orbital electron populations 1.24059 0.95474 1.03011 0.94750 1.22962 0.96452 0.97416 1.04699 1.21085 0.90085 0.98901 0.84936 1.50747 1.08437 1.51496 1.11138 1.79696 0.92768 1.11853 1.14226 1.79649 1.15197 1.08352 0.95512 1.51161 1.06013 1.50194 1.13277 1.22665 1.05576 0.89914 0.71318 1.62015 1.17957 1.19392 1.26637 1.20412 1.00462 0.96936 0.76966 1.21159 0.91679 1.42502 0.99860 0.90296 1.24917 0.97486 0.95254 0.96386 1.69945 1.31225 1.44142 1.08399 0.86510 0.84581 0.78958 0.77187 1.20011 1.21603 1.19975 1.23213 0.95468 0.90948 1.03326 1.20368 0.73480 0.91223 0.74456 1.93169 1.95674 1.81613 1.44364 1.93137 1.46601 1.96992 1.80879 1.93190 1.59444 1.87946 1.74880 1.24727 0.93669 0.87088 0.83827 1.93579 1.07295 1.55324 1.79941 0.87634 0.87262 0.86801 0.85963 0.86999 0.83040 0.90183 0.97997 0.91112 0.92777 0.90067 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 14.32 29.01 0.42 -0.60 16 2 C -0.20 -1.61 9.85 -36.03 -0.35 -1.96 16 3 C 0.17 1.53 6.69 -5.20 -0.03 1.50 16 4 N -0.41 -5.24 3.61 -63.07 -0.23 -5.47 16 5 N 0.01 0.11 13.55 60.35 0.82 0.93 16 6 N 0.01 0.10 12.13 60.35 0.73 0.83 16 7 N -0.40 -6.19 3.37 -64.90 -0.22 -6.41 16 8 C 0.31 5.24 5.78 -63.32 -0.37 4.87 16 9 N -0.53 -10.24 4.33 -239.99 -1.04 -11.28 16 10 C 0.18 4.07 4.57 -4.98 -0.02 4.05 16 11 C -0.51 -13.57 8.55 -34.44 -0.29 -13.86 16 12 H 0.08 2.14 7.57 -52.48 -0.40 1.74 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.90 -25.55 13.29 55.43 0.74 -24.82 16 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.00 0.02 5.02 -3.83 -0.02 0.00 16 20 C 0.46 8.18 3.25 37.16 0.12 8.30 16 21 F -0.17 -3.37 14.44 2.25 0.03 -3.34 16 22 F -0.19 -3.11 17.32 2.25 0.04 -3.07 16 23 F -0.17 -3.40 17.12 2.25 0.04 -3.36 16 24 C 0.46 7.38 8.01 -86.41 -0.69 6.68 16 25 S -0.49 -9.23 29.78 -107.50 -3.20 -12.43 16 26 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 27 H 0.11 0.81 7.84 -52.48 -0.41 0.40 16 28 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.12 1.13 7.37 -51.93 -0.38 0.75 16 30 H 0.11 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.15 2.82 6.76 -51.93 -0.35 2.47 16 32 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 33 H 0.00 0.05 8.03 -51.93 -0.42 -0.36 16 34 H 0.07 1.79 4.96 -51.93 -0.26 1.53 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 37 H 0.10 1.44 6.10 -51.93 -0.32 1.13 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -30.72 348.63 -7.18 -37.90 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.78 Total: -2.03 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -1.35 Total: 10.57 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.80 Total: -46.23 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 0.11 Total: -9.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -3.20 Total: -12.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.72 -7.18 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176058097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.317 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds