Wall clock time and date at job start Tue Mar 31 2020 19:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00299 * 2 1 4 4 N 1.46490 * 109.47341 * 125.00463 * 3 2 1 5 5 N 1.40027 * 126.26432 * 90.02029 * 4 3 2 6 6 N 1.23646 * 109.31706 * 180.02562 * 5 4 3 7 7 N 1.40026 * 109.32082 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.25849 * 179.73475 * 7 6 5 9 9 N 1.46901 * 109.46862 * 90.02576 * 8 7 6 10 10 C 1.46903 * 110.99979 * 169.99575 * 9 8 7 11 11 C 1.50697 * 109.47474 * 286.12507 * 10 9 8 12 12 H 1.08007 * 120.00022 * 3.88793 * 11 10 9 13 13 C 1.37874 * 120.00543 * 183.88897 * 11 10 9 14 14 N 1.31520 * 119.99452 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00597 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46871 * 60.00156 * 15 13 11 17 17 H 1.48496 * 109.47227 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47094 * 300.00293 * 15 13 11 19 19 C 1.46900 * 111.00292 * 293.95554 * 9 8 7 20 20 C 1.52998 * 109.47239 * 162.38223 * 19 9 8 21 21 F 1.39907 * 109.47350 * 66.46677 * 20 19 9 22 22 F 1.39895 * 109.46991 * 186.45913 * 20 19 9 23 23 F 1.39894 * 109.47280 * 306.46320 * 20 19 9 24 24 C 1.35055 * 107.47812 * 359.97438 * 7 6 5 25 25 S 1.71195 * 126.79442 * 179.97438 * 24 7 6 26 26 H 1.07999 * 120.00089 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99664 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99664 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46816 * 4.99905 * 3 2 1 30 30 H 1.09009 * 109.47029 * 245.00647 * 3 2 1 31 31 H 1.08998 * 109.46877 * 210.02471 * 8 7 6 32 32 H 1.08996 * 109.47618 * 330.03073 * 8 7 6 33 33 H 1.09000 * 109.46909 * 46.12203 * 10 9 8 34 34 H 1.08999 * 109.46854 * 166.12252 * 10 9 8 35 35 H 0.97001 * 119.99867 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.46661 * 282.37613 * 19 9 8 37 37 H 1.08991 * 109.47451 * 42.37837 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 7 4.3208 0.8848 1.1231 6 7 4.8161 1.0534 2.2435 7 7 3.8601 1.6262 3.0912 8 6 4.0510 1.9769 4.5007 9 7 4.5412 3.3582 4.5995 10 6 4.5198 3.8261 5.9918 11 6 3.0976 4.1008 6.4076 12 1 2.2853 3.8842 5.7296 13 6 2.8333 4.6287 7.6536 14 7 3.8225 4.8930 8.4791 15 14 1.0705 4.9699 8.1688 16 1 0.2936 3.7046 8.1431 17 1 1.0564 5.5322 9.5431 18 1 0.4600 5.9447 7.2293 19 6 5.8868 3.4818 4.0232 20 6 6.1868 4.9550 3.7395 21 9 6.2676 5.6556 4.9479 22 9 7.4037 5.0601 3.0574 23 9 5.1636 5.4965 2.9541 24 6 2.7282 1.7912 2.3732 25 16 1.2491 2.4511 2.9279 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1315 0.0896 30 1 2.6213 1.4025 -0.9315 31 1 3.1014 1.8898 5.0286 32 1 4.7790 1.3003 4.9482 33 1 4.9460 3.0598 6.6393 34 1 5.1063 4.7409 6.0767 35 1 3.6365 5.2640 9.3558 36 1 6.6210 3.0906 4.7276 37 1 5.9374 2.9152 3.0935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176058097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:43 Heat of formation + Delta-G solvation = 3.188518 kcal Electronic energy + Delta-G solvation = -27901.059308 eV Core-core repulsion = 23428.955053 eV Total energy + Delta-G solvation = -4472.104255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.10081 -48.65586 -48.53947 -44.29094 -39.13999 -37.38960 -35.66905 -34.61283 -34.08208 -31.01389 -29.54101 -28.23775 -26.82477 -25.20769 -24.63506 -24.29209 -22.70954 -21.15856 -19.80291 -19.56586 -19.21563 -18.65393 -18.54507 -18.32777 -18.08459 -17.54350 -16.68133 -16.17072 -15.63897 -15.58153 -15.51947 -15.45708 -15.17095 -14.99050 -14.78456 -14.74017 -14.68156 -14.65020 -14.46765 -13.93501 -13.43373 -13.28833 -13.26473 -12.98264 -12.81014 -12.70473 -12.63828 -12.60130 -12.45786 -11.91180 -11.66458 -11.26794 -10.56041 -10.52590 -9.57631 -9.12377 -8.85606 -8.14741 -6.19430 -0.51131 -0.32821 -0.26518 0.88005 1.02518 1.45774 1.47712 1.55982 1.58383 1.70050 2.40749 2.56418 2.59897 2.85064 3.01382 3.20680 3.22224 3.47971 3.73154 3.87307 3.95999 4.07472 4.13306 4.24595 4.33884 4.42955 4.57962 4.73955 4.96685 4.97782 5.10670 5.60048 5.67094 5.68059 5.82619 5.97234 6.18500 6.31739 6.95379 7.48612 8.95455 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.005155 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.233585 B = 5430.793894 C = 7464.237092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.204 4.204 3 C 0.158 3.842 4 N -0.395 5.395 5 N 0.028 4.972 6 N 0.013 4.987 7 N -0.400 5.400 8 C 0.319 3.681 9 N -0.549 5.549 10 C 0.191 3.809 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.017 3.983 14 N -0.926 5.926 15 Si 0.950 3.050 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.008 3.992 20 C 0.457 3.543 21 F -0.184 7.184 22 F -0.182 7.182 23 F -0.187 7.187 24 C 0.473 3.527 25 S -0.562 6.562 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.113 0.887 33 H -0.002 1.002 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.105 0.895 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -11.005 -17.359 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.224 4.224 3 C 0.041 3.959 4 N -0.198 5.198 5 N 0.034 4.966 6 N 0.019 4.981 7 N -0.204 5.204 8 C 0.110 3.890 9 N -0.276 5.276 10 C 0.067 3.933 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.181 4.181 14 N -0.567 5.567 15 Si 0.776 3.224 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.207 1.207 19 C -0.122 4.122 20 C 0.402 3.598 21 F -0.165 7.165 22 F -0.163 7.163 23 F -0.168 7.168 24 C 0.113 3.887 25 S -0.437 6.437 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.130 0.870 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.391 -10.691 -17.521 20.664 hybrid contribution -0.104 0.275 0.928 0.973 sum 2.287 -10.416 -16.593 19.724 Atomic orbital electron populations 1.24240 0.95472 1.03696 0.93373 1.22938 0.96602 0.97031 1.05799 1.21562 0.90143 0.99473 0.84743 1.51107 1.08604 1.49425 1.10680 1.79703 0.92377 1.10903 1.13656 1.79714 1.14438 1.08585 0.95387 1.51047 1.06289 1.49869 1.13236 1.22512 1.05304 0.89284 0.71901 1.61680 1.20138 1.21308 1.24464 1.19984 0.98136 0.96122 0.79102 1.21399 0.93111 1.41442 0.99466 0.91522 1.25539 1.00316 0.95555 0.96738 1.70022 1.32582 1.45398 1.08708 0.85730 0.81176 0.78671 0.76793 1.19485 1.20960 1.20731 1.23265 0.94428 0.90031 1.04501 1.20626 0.73594 0.91724 0.73815 1.93138 1.95757 1.82127 1.45492 1.93158 1.45688 1.96976 1.80501 1.93163 1.60200 1.88280 1.75165 1.24333 0.92891 0.86696 0.84817 1.93717 1.09699 1.59109 1.81198 0.86173 0.87467 0.86152 0.86282 0.83765 0.85235 0.86963 0.98414 0.92982 0.92828 0.87708 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 14.32 67.78 0.97 -0.76 16 2 C -0.20 -2.91 9.85 25.64 0.25 -2.66 16 3 C 0.16 2.51 6.69 85.63 0.57 3.08 16 4 N -0.39 -9.12 3.61 -353.47 -1.27 -10.39 16 5 N 0.03 0.61 13.55 37.02 0.50 1.11 16 6 N 0.01 0.31 12.13 37.02 0.45 0.76 16 7 N -0.40 -11.64 3.37 -359.26 -1.21 -12.85 16 8 C 0.32 10.22 5.78 170.81 0.99 11.20 16 9 N -0.55 -20.58 4.33 -913.18 -3.96 -24.54 16 10 C 0.19 8.87 4.57 85.56 0.39 9.26 16 11 C -0.52 -27.53 8.55 25.60 0.22 -27.31 16 12 H 0.07 3.69 7.57 -2.91 -0.02 3.67 16 13 C 0.02 0.96 5.46 84.65 0.46 1.42 16 14 N -0.93 -53.13 13.29 21.45 0.28 -52.84 16 15 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 19 C 0.01 0.24 5.02 86.30 0.43 0.67 16 20 C 0.46 15.71 3.25 71.98 0.23 15.95 16 21 F -0.18 -7.38 14.44 44.97 0.65 -6.73 16 22 F -0.18 -5.46 17.32 44.97 0.78 -4.69 16 23 F -0.19 -7.19 17.12 44.97 0.77 -6.42 16 24 C 0.47 14.50 8.01 178.88 1.43 15.93 16 25 S -0.56 -21.54 29.78 -56.49 -1.68 -23.22 16 26 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 27 H 0.11 1.48 7.84 -2.91 -0.02 1.46 16 28 H 0.12 1.59 8.06 -2.91 -0.02 1.56 16 29 H 0.12 2.06 7.37 -2.39 -0.02 2.04 16 30 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.13 4.82 6.76 -2.39 -0.02 4.81 16 32 H 0.11 2.89 8.12 -2.39 -0.02 2.87 16 33 H 0.00 -0.09 8.03 -2.39 -0.02 -0.11 16 34 H 0.05 2.66 4.96 -2.39 -0.01 2.64 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.11 2.76 8.03 -2.38 -0.02 2.74 16 37 H 0.12 3.10 6.10 -2.39 -0.01 3.08 16 Total: -1.00 -66.37 348.63 4.41 -61.96 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.12 Total: 3.96 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.96 Total: 26.78 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -5.21 Total: -98.76 kcal Atomic # 9 Polarization: -20.04 SS G_CDS: 2.20 Total: -17.84 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -21.54 SS G_CDS: -1.68 Total: -23.22 kcal Total: -66.37 4.41 -61.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176058097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.146 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds