Wall clock time and date at job start Tue Mar 31 2020 19:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47217 * 2 1 4 4 C 1.53005 * 109.47320 * 120.00666 * 2 1 3 5 5 O 1.42901 * 109.47224 * 175.00267 * 4 2 1 6 6 C 1.35526 * 116.99788 * 179.97438 * 5 4 2 7 7 N 1.32411 * 119.52561 * 0.02562 * 6 5 4 8 8 C 1.31644 * 121.82082 * 180.02562 * 7 6 5 9 9 C 1.39617 * 120.63714 * 0.02562 * 8 7 6 10 10 C 1.47518 * 120.50011 * 179.97438 * 9 8 7 11 11 O 1.21615 * 120.00060 * 119.87622 * 10 9 8 12 12 N 1.34783 * 119.99741 * 299.88224 * 10 9 8 13 13 C 1.36898 * 119.99874 * 184.17423 * 12 10 9 14 14 H 1.08001 * 120.00383 * 342.86258 * 13 12 10 15 15 C 1.39022 * 120.00332 * 162.86445 * 13 12 10 16 16 N 1.31391 * 119.99578 * 330.32895 * 15 13 12 17 17 Si 1.86798 * 120.00405 * 150.32629 * 15 13 12 18 18 H 1.48510 * 109.46817 * 60.00295 * 17 15 13 19 19 H 1.48497 * 109.47169 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47315 * 300.00407 * 17 15 13 21 21 C 1.46500 * 120.00094 * 4.16949 * 12 10 9 22 22 C 1.47197 * 109.47098 * 269.29166 * 21 12 10 23 23 N 8.27846 * 125.14542 * 85.95177 * 2 1 3 24 24 C 1.40303 * 119.00125 * 0.23204 * 9 8 7 25 25 C 1.38076 * 118.34121 * 359.50129 * 24 9 8 26 26 Cl 1.73590 * 120.37595 * 180.21944 * 25 24 9 27 27 H 1.09001 * 109.47220 * 299.99223 * 1 2 3 28 28 H 1.08997 * 109.47208 * 59.99837 * 1 2 3 29 29 H 1.09002 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 240.00241 * 2 1 3 31 31 H 1.08995 * 109.47479 * 300.00610 * 3 2 1 32 32 H 1.09000 * 109.46891 * 60.00116 * 3 2 1 33 33 H 1.09001 * 109.47108 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47477 * 54.99653 * 4 2 1 35 35 H 1.09001 * 109.46628 * 294.99842 * 4 2 1 36 36 H 1.08001 * 119.68057 * 179.97438 * 8 7 6 37 37 H 0.96996 * 119.99487 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47000 * 149.29150 * 21 12 10 39 39 H 1.09002 * 109.47099 * 29.29270 * 21 12 10 40 40 H 1.08002 * 120.82962 * 179.74858 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 8 3.4643 -0.8239 1.1919 6 6 4.0789 -1.4408 2.2304 7 7 3.3523 -1.9128 3.2317 8 6 3.9022 -2.5191 4.2627 9 6 5.2865 -2.6858 4.3349 10 6 5.8994 -3.3652 5.4920 11 8 6.5535 -4.3771 5.3266 12 7 5.7346 -2.8645 6.7325 13 6 6.3729 -3.4450 7.7953 14 1 6.7757 -4.4429 7.7040 15 6 6.5028 -2.7500 8.9923 16 7 6.5751 -1.4381 8.9856 17 14 6.5746 -3.6811 10.6101 18 1 7.7408 -4.6005 10.6007 19 1 6.7142 -2.7167 11.7306 20 1 5.3265 -4.4666 10.7849 21 6 4.8723 -1.6991 6.9434 22 6 5.6744 -0.4695 6.8365 23 7 6.2955 0.4779 6.7524 24 6 6.0863 -2.1925 3.2931 25 6 5.4655 -1.5686 2.2292 26 17 6.4035 -0.9437 0.9090 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6055 -1.7200 1.2951 35 1 1.7517 -0.1585 2.1369 36 1 3.2764 -2.8905 5.0608 37 1 6.6653 -0.9532 9.8208 38 1 4.4226 -1.7545 7.9347 39 1 4.0864 -1.6871 6.1881 40 1 7.1604 -2.3016 3.3206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183328225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:31 Heat of formation + Delta-G solvation = -24.914525 kcal Electronic energy + Delta-G solvation = -26476.926158 eV Core-core repulsion = 22511.123546 eV Total energy + Delta-G solvation = -3965.802612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06346 -40.63104 -39.11250 -37.69677 -37.63276 -36.22610 -36.12829 -33.97829 -33.56176 -31.73309 -29.24533 -28.02097 -27.90156 -26.95077 -24.98984 -24.55711 -21.57396 -21.19353 -19.89033 -19.70740 -18.71319 -18.55304 -17.85039 -17.39958 -16.97081 -16.27725 -16.12690 -15.97800 -15.53699 -15.32747 -15.07506 -14.75228 -14.72564 -14.48186 -14.12309 -13.87307 -13.83945 -13.52326 -13.45775 -13.14434 -13.12296 -12.97741 -12.86363 -12.37527 -12.34277 -12.26658 -12.16988 -12.10012 -12.01262 -11.67578 -11.55852 -11.24890 -11.15461 -10.91183 -10.51735 -10.03001 -9.52712 -8.49408 -5.98335 -0.35601 -0.16237 0.86524 1.38096 1.52187 1.61081 1.72982 1.75837 1.98518 2.25941 2.35928 2.41042 2.90151 2.96185 3.07543 3.53667 3.55431 3.66224 3.73358 3.89627 3.94519 4.06153 4.21691 4.34543 4.40755 4.52945 4.60060 4.67601 4.71815 4.82328 4.83645 4.97577 5.02371 5.04430 5.22527 5.41035 5.42805 5.46030 5.93242 6.02220 6.30148 6.43805 7.00365 7.05875 7.23522 7.78950 8.52879 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.003145 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.174936 B = 8900.239707 C = 9342.329542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.148 4.148 4 C 0.067 3.933 5 O -0.295 6.295 6 C 0.340 3.660 7 N -0.515 5.515 8 C 0.173 3.827 9 C -0.189 4.189 10 C 0.496 3.504 11 O -0.606 6.606 12 N -0.432 5.432 13 C -0.352 4.352 14 H 0.091 0.909 15 C 0.015 3.985 16 N -0.873 5.873 17 Si 0.986 3.014 18 H -0.281 1.281 19 H -0.282 1.282 20 H -0.254 1.254 21 C 0.217 3.783 22 C 0.253 3.747 23 N -0.500 5.500 24 C -0.004 4.004 25 C -0.115 4.115 26 Cl -0.037 7.037 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.207 0.793 37 H 0.278 0.722 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 3.026 -13.080 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.008 4.008 5 O -0.201 6.201 6 C 0.160 3.840 7 N -0.239 5.239 8 C 0.016 3.984 9 C -0.196 4.196 10 C 0.286 3.714 11 O -0.492 6.492 12 N -0.149 5.149 13 C -0.478 4.478 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.509 5.509 17 Si 0.809 3.191 18 H -0.206 1.206 19 H -0.208 1.208 20 H -0.179 1.179 21 C 0.090 3.910 22 C -0.065 4.065 23 N -0.181 5.181 24 C -0.031 4.031 25 C -0.145 4.145 26 Cl -0.008 7.008 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.002 4.394 -13.544 19.970 hybrid contribution 1.482 -0.713 1.075 1.964 sum -12.520 3.681 -12.469 18.050 Atomic orbital electron populations 1.21747 0.92017 1.02850 1.03152 1.21194 0.97156 0.96442 0.96313 1.21830 1.00858 0.95358 1.02445 1.23094 0.75633 1.01847 1.00188 1.86258 1.24978 1.70924 1.37957 1.19641 0.87450 0.89636 0.87280 1.67600 1.38319 1.15454 1.02519 1.23181 0.90780 0.90113 0.94355 1.20811 0.96019 1.05372 0.97350 1.17990 0.84250 0.86769 0.82434 1.90645 1.45839 1.27713 1.84966 1.43721 1.40433 1.25125 1.05644 1.19583 1.38677 1.00310 0.89272 0.89137 1.25967 0.94838 0.95701 1.02461 1.69953 1.43764 1.07758 1.29377 0.85110 0.79514 0.77966 0.76499 1.20623 1.20771 1.17859 1.19201 0.89489 0.76382 1.05908 1.29477 0.93416 0.93888 0.89724 1.80857 1.09026 1.15004 1.13219 1.21330 1.01224 0.90967 0.89529 1.20631 0.90030 1.08895 0.94898 1.98358 1.71740 1.85599 1.45103 0.91961 0.90689 0.91773 0.90225 0.91169 0.92589 0.93592 0.90822 0.91162 0.77659 0.91185 0.85569 0.85204 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.36 3.16 -10.79 -0.03 -1.40 16 3 C -0.15 -2.27 9.09 71.98 0.65 -1.61 16 4 C 0.07 1.28 4.68 71.98 0.34 1.61 16 5 O -0.30 -7.40 9.10 -88.29 -0.80 -8.20 16 6 C 0.34 9.66 7.49 84.85 0.64 10.29 16 7 N -0.52 -13.83 9.18 -307.66 -2.82 -16.65 16 8 C 0.17 4.77 8.83 85.05 0.75 5.52 16 9 C -0.19 -6.63 4.97 -20.00 -0.10 -6.73 16 10 C 0.50 21.76 7.10 86.69 0.62 22.37 16 11 O -0.61 -31.58 16.74 -4.08 -0.07 -31.65 16 12 N -0.43 -18.98 2.58 -649.06 -1.67 -20.66 16 13 C -0.35 -17.32 9.27 84.09 0.78 -16.54 16 14 H 0.09 4.82 7.42 -2.91 -0.02 4.80 16 15 C 0.02 0.72 4.66 84.95 0.40 1.11 16 16 N -0.87 -42.18 9.65 21.68 0.21 -41.97 16 17 Si 0.99 37.56 29.64 68.60 2.03 39.60 16 18 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 21 C 0.22 7.87 4.97 84.57 0.42 8.29 16 22 C 0.25 10.89 12.98 89.44 1.16 12.05 16 23 N -0.50 -23.77 18.54 20.00 0.37 -23.40 16 24 C 0.00 -0.14 9.73 22.73 0.22 0.08 16 25 C -0.11 -3.51 6.35 22.47 0.14 -3.37 16 26 Cl -0.04 -1.02 28.52 -2.72 -0.08 -1.10 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 34 H 0.07 1.34 8.10 -2.39 -0.02 1.33 16 35 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.21 4.27 7.27 -2.91 -0.02 4.25 16 37 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 38 H 0.13 4.40 7.09 -2.39 -0.02 4.38 16 39 H 0.13 3.55 4.39 -2.39 -0.01 3.54 16 40 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -64.28 363.15 4.89 -59.38 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.08 Total: 13.77 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 6.64 Total: 30.88 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.92 Total: -102.68 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.87 Total: -39.85 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -64.28 4.89 -59.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183328225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.470 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds