Wall clock time and date at job start Tue Mar 31 2020 20:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40050 * 125.95157 * 2 1 4 4 C 1.31892 * 108.22971 * 179.97438 * 3 2 1 5 5 C 1.47665 * 125.98634 * 179.73980 * 4 3 2 6 6 O 1.21579 * 120.00369 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00059 * 0.02562 * 5 4 3 8 8 C 1.39131 * 120.00278 * 176.13328 * 7 5 4 9 9 C 1.39509 * 119.83782 * 215.21293 * 8 7 5 10 10 C 1.36358 * 120.16702 * 179.76000 * 9 8 7 11 11 C 1.40882 * 119.83183 * 0.51289 * 10 9 8 12 12 C 1.41130 * 120.16465 * 179.72386 * 11 10 9 13 13 H 1.08003 * 120.00028 * 213.87712 * 12 11 10 14 14 C 1.39908 * 120.00269 * 33.86856 * 12 11 10 15 15 N 1.30872 * 120.00152 * 5.84808 * 14 12 11 16 16 Si 1.86800 * 120.00306 * 185.83963 * 14 12 11 17 17 H 1.48496 * 109.47124 * 90.00162 * 16 14 12 18 18 H 1.48495 * 109.47458 * 210.00437 * 16 14 12 19 19 H 1.48504 * 109.46959 * 330.00717 * 16 14 12 20 20 C 1.40883 * 119.67215 * 359.73912 * 11 10 9 21 21 C 1.36360 * 119.83360 * 0.02562 * 20 11 10 22 22 C 1.41074 * 108.02665 * 0.02562 * 4 3 2 23 23 C 1.35585 * 107.80355 * 0.02562 * 22 4 3 24 24 O 1.35770 * 126.08340 * 179.97438 * 23 22 4 25 25 C 1.42901 * 116.99937 * 4.70083 * 24 23 22 26 26 F 1.39902 * 109.47111 * 304.24365 * 25 24 23 27 27 F 1.39899 * 109.47082 * 64.24273 * 25 24 23 28 28 H 1.09001 * 109.46868 * 85.04072 * 1 2 3 29 29 H 1.08994 * 109.47862 * 205.04474 * 1 2 3 30 30 H 1.09005 * 109.47009 * 325.05071 * 1 2 3 31 31 H 0.97000 * 120.00446 * 356.13655 * 7 5 4 32 32 H 1.08001 * 119.91912 * 359.97438 * 9 8 7 33 33 H 1.07999 * 120.08706 * 180.25093 * 10 9 8 34 34 H 0.96998 * 120.00267 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.08314 * 179.97438 * 20 11 10 36 36 H 1.07994 * 119.91608 * 179.97438 * 21 20 11 37 37 H 1.08006 * 126.10010 * 180.02562 * 22 4 3 38 38 H 1.08997 * 109.47026 * 184.24852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1337 0.0000 4 6 3.5436 0.7323 0.0006 5 6 4.7338 1.6063 -0.0047 6 8 5.8470 1.1175 -0.0040 7 7 4.5861 2.9459 -0.0101 8 6 5.7048 3.7695 0.0662 9 6 5.6329 4.9750 0.7646 10 6 6.7267 5.7850 0.8478 11 6 7.9284 5.4069 0.2171 12 6 9.0630 6.2427 0.2939 13 1 9.7494 6.2992 -0.5381 14 6 9.2986 6.9982 1.4476 15 7 8.5330 6.8450 2.4978 16 14 10.7062 8.2256 1.4890 17 1 10.2226 9.5494 1.0211 18 1 11.2159 8.3477 2.8784 19 1 11.7992 7.7555 0.6003 20 6 7.9918 4.1905 -0.4908 21 6 6.8912 3.3885 -0.5613 22 6 3.5511 -0.6785 0.0003 23 6 2.2624 -1.0999 -0.0010 24 8 1.8434 -2.3913 -0.0021 25 6 2.8501 -3.4001 0.1025 26 9 3.7881 -3.2308 -0.9217 27 9 3.4894 -3.2942 1.3424 28 1 -0.3633 0.0888 -1.0238 29 1 -0.3634 -0.9309 0.4350 30 1 -0.3633 0.8424 0.5887 31 1 3.6998 3.3360 -0.0672 32 1 4.7096 5.2659 1.2435 33 1 6.6708 6.7161 1.3922 34 1 8.6966 7.3686 3.2978 35 1 8.9095 3.8943 -0.9771 36 1 6.9382 2.4560 -1.1039 37 1 4.4271 -1.3102 0.0011 38 1 2.3893 -4.3839 0.0141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185011168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:34 Heat of formation + Delta-G solvation = -66.012241 kcal Electronic energy + Delta-G solvation = -27738.664170 eV Core-core repulsion = 23219.282747 eV Total energy + Delta-G solvation = -4519.381423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.66996 -47.73461 -41.68507 -39.50700 -38.50946 -37.15081 -34.43924 -33.63044 -32.84276 -30.08098 -29.53460 -28.95064 -27.45721 -26.61043 -25.05904 -23.14959 -21.69519 -21.41746 -20.65066 -19.83100 -18.82908 -18.39609 -18.33077 -17.29291 -17.07625 -16.37437 -16.26750 -16.16711 -15.18724 -15.00339 -14.60912 -14.51607 -14.35932 -14.11066 -14.00531 -13.90508 -13.82948 -13.21481 -13.07902 -12.90332 -12.61388 -12.51108 -12.44305 -12.07989 -11.74391 -11.35972 -11.18772 -11.09622 -10.99743 -10.73180 -10.07445 -9.49111 -9.47542 -9.42793 -9.20355 -8.88785 -8.81288 -7.52276 -6.86855 -6.63801 -4.30055 1.20353 1.26467 1.93662 2.50520 2.74107 3.02497 3.10664 3.12301 3.15224 3.18585 3.58035 3.74039 3.81737 3.99735 4.13335 4.16087 4.71674 4.73040 4.81990 4.85890 5.08307 5.24109 5.41925 5.69285 5.77593 6.14328 6.23598 6.46870 6.61667 6.76089 6.92958 7.08052 7.16788 7.21957 7.31692 7.64112 7.74930 7.87502 8.07655 8.27340 8.32263 8.61824 8.72269 8.93451 9.01407 10.30615 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024283 B = 0.002231 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.802404 B =12549.226524 C =13161.974743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.356 5.356 3 N -0.243 5.243 4 C 0.071 3.929 5 C 0.579 3.421 6 O -0.513 6.513 7 N -0.630 5.630 8 C -0.002 4.002 9 C -0.113 4.113 10 C -0.141 4.141 11 C 0.107 3.893 12 C -0.462 4.462 13 H 0.077 0.923 14 C 0.071 3.929 15 N -0.807 5.807 16 Si 0.913 3.087 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.207 4.207 21 C -0.080 4.080 22 C -0.264 4.264 23 C 0.256 3.744 24 O -0.318 6.318 25 C 0.428 3.572 26 F -0.189 7.189 27 F -0.191 7.191 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.402 0.598 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.279 0.721 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.166 0.834 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.700 -17.110 -3.287 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.148 5.148 3 N -0.073 5.073 4 C -0.097 4.097 5 C 0.363 3.637 6 O -0.386 6.386 7 N -0.273 5.273 8 C -0.094 4.094 9 C -0.134 4.134 10 C -0.161 4.161 11 C 0.104 3.896 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.145 4.145 15 N -0.434 5.434 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.227 4.227 21 C -0.100 4.100 22 C -0.294 4.294 23 C 0.088 3.912 24 O -0.231 6.231 25 C 0.338 3.662 26 F -0.171 7.171 27 F -0.172 7.172 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.184 0.816 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.962 -16.531 -3.034 24.600 hybrid contribution 0.747 -0.104 0.283 0.806 sum -17.215 -16.635 -2.751 24.097 Atomic orbital electron populations 1.21979 0.73089 1.04889 1.04046 1.48609 1.06879 1.00710 1.58582 1.77854 1.00690 1.04227 1.24528 1.22075 0.92181 0.93972 1.01438 1.16879 0.86164 0.81907 0.78783 1.90807 1.23990 1.74524 1.49308 1.42806 1.09709 1.04534 1.70235 1.17219 0.88070 0.94617 1.09531 1.20268 0.98532 0.94953 0.99613 1.20928 0.91269 1.00225 1.03682 1.17707 0.92363 0.90176 0.89305 1.19515 1.07592 1.21217 1.00907 0.90465 1.25882 0.97353 0.96226 0.95010 1.69791 1.35876 1.34937 1.02751 0.86233 0.81174 0.80581 0.78203 1.19466 1.20370 1.18716 1.20779 0.97271 0.95870 1.08789 1.20411 0.92470 0.98843 0.98296 1.21241 0.95026 0.95024 1.18116 1.18566 0.89733 0.80560 1.02343 1.86315 1.36357 1.11623 1.88784 1.23443 0.78058 0.92215 0.72526 1.93155 1.67911 1.96021 1.59998 1.93162 1.83371 1.96571 1.44146 0.90197 0.89020 0.88647 0.76310 0.88928 0.86010 0.91041 0.88455 0.87379 0.81647 0.79261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.34 16 2 N -0.36 -4.21 4.04 -68.19 -0.28 -4.48 16 3 N -0.24 -3.57 12.27 33.34 0.41 -3.16 16 4 C 0.07 1.18 7.09 -82.92 -0.59 0.59 16 5 C 0.58 11.51 7.65 -12.41 -0.09 11.41 16 6 O -0.51 -11.82 14.34 5.30 0.08 -11.74 16 7 N -0.63 -12.29 5.30 -10.64 -0.06 -12.35 16 8 C 0.00 -0.05 6.30 -83.60 -0.53 -0.58 16 9 C -0.11 -2.66 9.90 -39.79 -0.39 -3.05 16 10 C -0.14 -3.67 8.57 -39.26 -0.34 -4.01 16 11 C 0.11 2.90 5.51 -106.80 -0.59 2.31 16 12 C -0.46 -12.41 9.03 -37.86 -0.34 -12.76 16 13 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 14 C 0.07 1.82 5.31 -17.34 -0.09 1.72 16 15 N -0.81 -21.28 10.94 55.55 0.61 -20.67 16 16 Si 0.91 19.09 29.56 -169.99 -5.03 14.07 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 21 C -0.08 -1.97 8.60 -39.78 -0.34 -2.32 16 22 C -0.26 -3.96 8.86 -39.46 -0.35 -4.31 16 23 C 0.26 3.14 7.48 -16.72 -0.13 3.01 16 24 O -0.32 -2.79 10.35 -19.02 -0.20 -2.99 16 25 C 0.43 2.82 6.00 101.05 0.61 3.42 16 26 F -0.19 -1.75 15.44 2.25 0.03 -1.72 16 27 F -0.19 -1.77 16.75 2.25 0.04 -1.74 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.41 8.04 -51.93 -0.42 0.00 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 6.67 8.51 -40.82 -0.35 6.32 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.24 6.44 -52.49 -0.34 2.90 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.11 2.61 6.25 -52.49 -0.33 2.29 16 37 H 0.17 2.51 6.57 -52.48 -0.34 2.17 16 38 H 0.19 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -33.64 344.27 -5.51 -39.14 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.44 Total: 9.35 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.87 Total: -8.90 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.69 Total: -40.66 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.12 Total: -14.73 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -5.51 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185011168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.869 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds